[DATALAD RUNCMD] Compute MPG_1/sub-0027437/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MPG_1/sub-0027437/ses-1/anat/sub-0027437_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MPG_1/sub-0027437/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MPG_1/sub-0027437/ses-1/label/catROI_sub-0027437_ses-1_acq-uni_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/QF/F0/MD5E-s61277--060ac8b6f9bee35e7e33901ddebc7b60.mat/MD5E-s61277--060ac8b6f9bee35e7e33901ddebc7b60.mat

MPG_1/sub-0027437/ses-1/label/catROI_sub-0027437_ses-1_acq-uni_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4P/gV/MD5E-s188878--c58090f967c6b96ecc886c33a28e2f66.xml/MD5E-s188878--c58090f967c6b96ecc886c33a28e2f66.xml

MPG_1/sub-0027437/ses-1/label/catROI_sub-0027437_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xX/2j/MD5E-s61456--205017858de3253b3fd08b81bd930b26.mat/MD5E-s61456--205017858de3253b3fd08b81bd930b26.mat

MPG_1/sub-0027437/ses-1/label/catROI_sub-0027437_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/76/j4/MD5E-s189822--68199709ffb4b3ac5a791412d7c64b76.xml/MD5E-s189822--68199709ffb4b3ac5a791412d7c64b76.xml

MPG_1/sub-0027437/ses-1/label/catROIs_sub-0027437_ses-1_acq-uni_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0P/6g/MD5E-s120046--a173840ec32b234ac97e39691b0eb2ca.mat/MD5E-s120046--a173840ec32b234ac97e39691b0eb2ca.mat

MPG_1/sub-0027437/ses-1/label/catROIs_sub-0027437_ses-1_acq-uni_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qJ/Fq/MD5E-s332166--e745dd4787c2d1e3017f4069bf58d359.xml/MD5E-s332166--e745dd4787c2d1e3017f4069bf58d359.xml

MPG_1/sub-0027437/ses-1/label/catROIs_sub-0027437_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4p/WZ/MD5E-s120232--96e859c9dfab08fdab304a35b6d18fd6.mat/MD5E-s120232--96e859c9dfab08fdab304a35b6d18fd6.mat

MPG_1/sub-0027437/ses-1/label/catROIs_sub-0027437_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qw/mg/MD5E-s332140--1f9572454f54c7e8fdecd3531af3f442.xml/MD5E-s332140--1f9572454f54c7e8fdecd3531af3f442.xml

MPG_1/sub-0027437/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3K/x8/MD5E-s366447--a9f182b80b81f98da8fc4d431bee3ef9.nii.gz/MD5E-s366447--a9f182b80b81f98da8fc4d431bee3ef9.nii.gz

MPG_1/sub-0027437/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6j/ZP/MD5E-s345704--e491882febb26c034a3aa64bf854d503.nii.gz/MD5E-s345704--e491882febb26c034a3aa64bf854d503.nii.gz

MPG_1/sub-0027437/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3p/5g/MD5E-s409524--b0aad9a3fe19e65a182d00999f4f56db.nii.gz/MD5E-s409524--b0aad9a3fe19e65a182d00999f4f56db.nii.gz

MPG_1/sub-0027437/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kM/k5/MD5E-s384856--39bf4927283d6134fea0f9c55694d0b9.nii.gz/MD5E-s384856--39bf4927283d6134fea0f9c55694d0b9.nii.gz

MPG_1/sub-0027437/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vz/4W/MD5E-s526980--49dc9f4bde6c0ca31b22693c8eed4c40.nii.gz/MD5E-s526980--49dc9f4bde6c0ca31b22693c8eed4c40.nii.gz

MPG_1/sub-0027437/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m1/zV/MD5E-s496358--fde095c65662b22ced3c1c55d5df2660.nii.gz/MD5E-s496358--fde095c65662b22ced3c1c55d5df2660.nii.gz

MPG_1/sub-0027437/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P5/v6/MD5E-s584729--d6e55a5c2ff2622451d8aa0d78f927c0.nii.gz/MD5E-s584729--d6e55a5c2ff2622451d8aa0d78f927c0.nii.gz

MPG_1/sub-0027437/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qp/6x/MD5E-s550471--3956b40cbae21cef802f827fcaecbcfb.nii.gz/MD5E-s550471--3956b40cbae21cef802f827fcaecbcfb.nii.gz

MPG_1/sub-0027437/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/XW/2v/MD5E-s51311--a4bfe30a2d51b6d2d2c13b8e68cfabde.nii.gz/MD5E-s51311--a4bfe30a2d51b6d2d2c13b8e68cfabde.nii.gz

MPG_1/sub-0027437/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kf/Xf/MD5E-s51679--5feaef7a133b74a019e8ec4e828d62f7.nii.gz/MD5E-s51679--5feaef7a133b74a019e8ec4e828d62f7.nii.gz

MPG_1/sub-0027437/ses-1/mri/aal3_sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/W1/zQ/MD5E-s404368--a06514629302264c99afd6cd143a22d4.nii.gz/MD5E-s404368--a06514629302264c99afd6cd143a22d4.nii.gz

MPG_1/sub-0027437/ses-1/mri/aal3_sub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wW/7k/MD5E-s387095--4cf02d7e4689e683c4d4687765e9e711.nii.gz/MD5E-s387095--4cf02d7e4689e683c4d4687765e9e711.nii.gz

MPG_1/sub-0027437/ses-1/mri/anatomy3_sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/91/94/MD5E-s298323--16e4eb10f3184e772b171e57a1fc7f9f.nii.gz/MD5E-s298323--16e4eb10f3184e772b171e57a1fc7f9f.nii.gz

MPG_1/sub-0027437/ses-1/mri/anatomy3_sub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2k/jJ/MD5E-s282576--eae1a7d040153d8fe5b8479fef09583e.nii.gz/MD5E-s282576--eae1a7d040153d8fe5b8479fef09583e.nii.gz

MPG_1/sub-0027437/ses-1/mri/anon_misub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vq/1g/MD5E-s29842898--6aea49ebb2c22fdc60652000dcfe77fe.nii.gz/MD5E-s29842898--6aea49ebb2c22fdc60652000dcfe77fe.nii.gz

MPG_1/sub-0027437/ses-1/mri/anon_misub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8m/XJ/MD5E-s29198727--4e6edb6f79b84f4fe0e0669cddf40ec5.nii.gz/MD5E-s29198727--4e6edb6f79b84f4fe0e0669cddf40ec5.nii.gz

MPG_1/sub-0027437/ses-1/mri/anon_msub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qf/Pf/MD5E-s30557849--ea998f8d46dbbc5448908fba4ba9c8c0.nii.gz/MD5E-s30557849--ea998f8d46dbbc5448908fba4ba9c8c0.nii.gz

MPG_1/sub-0027437/ses-1/mri/anon_msub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XM/45/MD5E-s29189957--d6a607b53b8b0a628ce5db28d48d8c5f.nii.gz/MD5E-s29189957--d6a607b53b8b0a628ce5db28d48d8c5f.nii.gz

MPG_1/sub-0027437/ses-1/mri/cat_sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/PG/9g/MD5E-s150162--3bcd43f03fcfde56a7d445aa777a52ce.nii.gz/MD5E-s150162--3bcd43f03fcfde56a7d445aa777a52ce.nii.gz

MPG_1/sub-0027437/ses-1/mri/cat_sub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fw/Vf/MD5E-s149953--7a51dd706813a961a28f5bfc0b16d8e5.nii.gz/MD5E-s149953--7a51dd706813a961a28f5bfc0b16d8e5.nii.gz

MPG_1/sub-0027437/ses-1/mri/cobra_sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/PM/qm/MD5E-s106789--e08292c61287d85a5bda007af846aac6.nii.gz/MD5E-s106789--e08292c61287d85a5bda007af846aac6.nii.gz

MPG_1/sub-0027437/ses-1/mri/cobra_sub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qp/M2/MD5E-s104564--085f84c13be5b1ae9511d56de677e05c.nii.gz/MD5E-s104564--085f84c13be5b1ae9511d56de677e05c.nii.gz

MPG_1/sub-0027437/ses-1/mri/hammers_sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/v4/X4/MD5E-s316136--aefc2b2e381686c48bc31c926561858a.nii.gz/MD5E-s316136--aefc2b2e381686c48bc31c926561858a.nii.gz

MPG_1/sub-0027437/ses-1/mri/hammers_sub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m3/jF/MD5E-s302362--fad6b72660a13ea73eee00cc820ac76e.nii.gz/MD5E-s302362--fad6b72660a13ea73eee00cc820ac76e.nii.gz

MPG_1/sub-0027437/ses-1/mri/ibsr_sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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MPG_1/sub-0027437/ses-1/mri/ibsr_sub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/7v/MD5E-s317020--c778200c94475165510fc0f9b69149f4.nii.gz/MD5E-s317020--c778200c94475165510fc0f9b69149f4.nii.gz

MPG_1/sub-0027437/ses-1/mri/it_sub-0027437_ses-1_acq-uni_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Wp/GM/MD5E-s282--d45a0668c36cec0682f6a52e63dc8b56.mat/MD5E-s282--d45a0668c36cec0682f6a52e63dc8b56.mat

MPG_1/sub-0027437/ses-1/mri/it_sub-0027437_ses-1_acq-uni_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2J/pF/MD5E-s283--36e52fa922cf35811738c6862aa3e060.mat/MD5E-s283--36e52fa922cf35811738c6862aa3e060.mat

MPG_1/sub-0027437/ses-1/mri/it_sub-0027437_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KQ/4p/MD5E-s282--a9dd11c5ba9ee0ad2bd354507c586121.mat/MD5E-s282--a9dd11c5ba9ee0ad2bd354507c586121.mat

MPG_1/sub-0027437/ses-1/mri/it_sub-0027437_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gG/V0/MD5E-s282--f5c7cd3992d9afa69bd430355aa24246.mat/MD5E-s282--f5c7cd3992d9afa69bd430355aa24246.mat

MPG_1/sub-0027437/ses-1/mri/iy_sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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MPG_1/sub-0027437/ses-1/mri/iy_sub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MPG_1/sub-0027437/ses-1/mri/julichbrain_sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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MPG_1/sub-0027437/ses-1/mri/julichbrain_sub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MPG_1/sub-0027437/ses-1/mri/lpba40_sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/FG/Xz/MD5E-s314344--05d62e4ca4eaaf2c67d5d50b374dde99.nii.gz/MD5E-s314344--05d62e4ca4eaaf2c67d5d50b374dde99.nii.gz

MPG_1/sub-0027437/ses-1/mri/lpba40_sub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MPG_1/sub-0027437/ses-1/mri/m0wp1sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/39/wJ/MD5E-s2537613--2f8eabc733ec7d2414f0a75decc78b69.nii.gz/MD5E-s2537613--2f8eabc733ec7d2414f0a75decc78b69.nii.gz

MPG_1/sub-0027437/ses-1/mri/m0wp1sub-0027437_ses-1_run-1_T1w.nii.gz

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MPG_1/sub-0027437/ses-1/mri/m0wp2sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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MPG_1/sub-0027437/ses-1/mri/m0wp2sub-0027437_ses-1_run-1_T1w.nii.gz

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MPG_1/sub-0027437/ses-1/mri/m0wp3sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

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MPG_1/sub-0027437/ses-1/mri/m0wp3sub-0027437_ses-1_run-1_T1w.nii.gz

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MPG_1/sub-0027437/ses-1/mri/mori_sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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MPG_1/sub-0027437/ses-1/mri/mori_sub-0027437_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MPG_1/sub-0027437/ses-1/mri/mwp1sub-0027437_ses-1_acq-uni_run-1_T1w.nii.gz

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