[DATALAD RUNCMD] Compute SWU_1/sub-0027215/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027215/ses-3/anat/sub-0027215_ses-3_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027215/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027215/ses-3/label/catROI_sub-0027215_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/w1/MD5E-s61342--64caabafcc2e2dfbf271c4751de48196.mat/MD5E-s61342--64caabafcc2e2dfbf271c4751de48196.mat

SWU_1/sub-0027215/ses-3/label/catROI_sub-0027215_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4F/vP/MD5E-s189323--afa8b23a408a153882baaa9e58777102.xml/MD5E-s189323--afa8b23a408a153882baaa9e58777102.xml

SWU_1/sub-0027215/ses-3/label/catROI_sub-0027215_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/px/xx/MD5E-s58658--9c10bb36679d1809b30bb56d92aacea3.mat/MD5E-s58658--9c10bb36679d1809b30bb56d92aacea3.mat

SWU_1/sub-0027215/ses-3/label/catROI_sub-0027215_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/KQ/Vw/MD5E-s189370--5186842698a2dc1e15954d2c9ddf9c54.xml/MD5E-s189370--5186842698a2dc1e15954d2c9ddf9c54.xml

SWU_1/sub-0027215/ses-3/label/catROIs_sub-0027215_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gx/qF/MD5E-s120075--3bbdf4aaefd866239f1aab963ac2636a.mat/MD5E-s120075--3bbdf4aaefd866239f1aab963ac2636a.mat

SWU_1/sub-0027215/ses-3/label/catROIs_sub-0027215_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wg/86/MD5E-s332146--b05efcbc94f925265a1818d889c9de77.xml/MD5E-s332146--b05efcbc94f925265a1818d889c9de77.xml

SWU_1/sub-0027215/ses-3/label/catROIs_sub-0027215_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4M/4x/MD5E-s120041--7d08cd1a1844044b1142b0f8e4654ea1.mat/MD5E-s120041--7d08cd1a1844044b1142b0f8e4654ea1.mat

SWU_1/sub-0027215/ses-3/label/catROIs_sub-0027215_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zw/k8/MD5E-s332151--09ee04311846ab088b08b476b855bdb3.xml/MD5E-s332151--09ee04311846ab088b08b476b855bdb3.xml

SWU_1/sub-0027215/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZJ/Qx/MD5E-s154614--a4b80ac8c0e58a7698c01bea6d4d307a.nii.gz/MD5E-s154614--a4b80ac8c0e58a7698c01bea6d4d307a.nii.gz

SWU_1/sub-0027215/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gj/0x/MD5E-s154573--2dcab48533903bdc53673e45f2746487.nii.gz/MD5E-s154573--2dcab48533903bdc53673e45f2746487.nii.gz

SWU_1/sub-0027215/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q9/4z/MD5E-s173384--f90962d3ca0f5f1fb1f963cabe9532de.nii.gz/MD5E-s173384--f90962d3ca0f5f1fb1f963cabe9532de.nii.gz

SWU_1/sub-0027215/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/f8/3P/MD5E-s174399--3259c1c20c41ed4a4ad467df48f7c634.nii.gz/MD5E-s174399--3259c1c20c41ed4a4ad467df48f7c634.nii.gz

SWU_1/sub-0027215/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wG/X8/MD5E-s234395--da96c1be4371c42b372ed10f2a1ccf9f.nii.gz/MD5E-s234395--da96c1be4371c42b372ed10f2a1ccf9f.nii.gz

SWU_1/sub-0027215/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/36/6J/MD5E-s234226--8c8fb259eb1be926da8518077e612a18.nii.gz/MD5E-s234226--8c8fb259eb1be926da8518077e612a18.nii.gz

SWU_1/sub-0027215/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qm/0j/MD5E-s260796--2cccb48f02b392ef9fb15114d4ba6b51.nii.gz/MD5E-s260796--2cccb48f02b392ef9fb15114d4ba6b51.nii.gz

SWU_1/sub-0027215/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Jp/M0/MD5E-s260914--3b027bf9ab1bd8e7c6b34f16b0e1b067.nii.gz/MD5E-s260914--3b027bf9ab1bd8e7c6b34f16b0e1b067.nii.gz

SWU_1/sub-0027215/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pf/8q/MD5E-s24544--c2ce88df950b117d3ae03500f990ba6a.nii.gz/MD5E-s24544--c2ce88df950b117d3ae03500f990ba6a.nii.gz

SWU_1/sub-0027215/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zP/5G/MD5E-s24534--a9513c86109f7ba9c97d61afa0cf9697.nii.gz/MD5E-s24534--a9513c86109f7ba9c97d61afa0cf9697.nii.gz

SWU_1/sub-0027215/ses-3/mri/aal3_sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xM/xm/MD5E-s177210--d2380b6a89a2c60e94f0d412c1fdc7c7.nii.gz/MD5E-s177210--d2380b6a89a2c60e94f0d412c1fdc7c7.nii.gz

SWU_1/sub-0027215/ses-3/mri/aal3_sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/J4/1K/MD5E-s177933--e1ece5d6bedba484716604511e4126ac.nii.gz/MD5E-s177933--e1ece5d6bedba484716604511e4126ac.nii.gz

SWU_1/sub-0027215/ses-3/mri/anatomy3_sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mJ/Wk/MD5E-s126134--9910306005fc1d7b8918a4d6b1e41bcc.nii.gz/MD5E-s126134--9910306005fc1d7b8918a4d6b1e41bcc.nii.gz

SWU_1/sub-0027215/ses-3/mri/anatomy3_sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zP/0g/MD5E-s125904--688b06eb9297f8059944d5da8f246c28.nii.gz/MD5E-s125904--688b06eb9297f8059944d5da8f246c28.nii.gz

SWU_1/sub-0027215/ses-3/mri/anon_misub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/65/v5/MD5E-s10299563--a67deb35071b115581626c7b6e3c0c6f.nii.gz/MD5E-s10299563--a67deb35071b115581626c7b6e3c0c6f.nii.gz

SWU_1/sub-0027215/ses-3/mri/anon_misub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2P/1G/MD5E-s10110527--4b41f032e638b416ca1da8a81fc6b296.nii.gz/MD5E-s10110527--4b41f032e638b416ca1da8a81fc6b296.nii.gz

SWU_1/sub-0027215/ses-3/mri/anon_msub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6P/Qp/MD5E-s9845097--4010223cddb14762f265f0980c6a9073.nii.gz/MD5E-s9845097--4010223cddb14762f265f0980c6a9073.nii.gz

SWU_1/sub-0027215/ses-3/mri/anon_msub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/KJ/Vx/MD5E-s9857917--458342c22614244af154f712aae8a9f0.nii.gz/MD5E-s9857917--458342c22614244af154f712aae8a9f0.nii.gz

SWU_1/sub-0027215/ses-3/mri/cat_sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kp/44/MD5E-s96463--04a8829a54e9ebe9f32889bdbbe76c30.nii.gz/MD5E-s96463--04a8829a54e9ebe9f32889bdbbe76c30.nii.gz

SWU_1/sub-0027215/ses-3/mri/cat_sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/p1/03/MD5E-s97655--b611e1b20a898381e77b00358fc726df.nii.gz/MD5E-s97655--b611e1b20a898381e77b00358fc726df.nii.gz

SWU_1/sub-0027215/ses-3/mri/cobra_sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/18/9F/MD5E-s47953--1a54bb05b17f6eb5ef585f90370f365b.nii.gz/MD5E-s47953--1a54bb05b17f6eb5ef585f90370f365b.nii.gz

SWU_1/sub-0027215/ses-3/mri/cobra_sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Qf/Vk/MD5E-s47821--07e094107b1f6549afa8cd391e0cfa4d.nii.gz/MD5E-s47821--07e094107b1f6549afa8cd391e0cfa4d.nii.gz

SWU_1/sub-0027215/ses-3/mri/hammers_sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9w/Wp/MD5E-s139683--c062376696d50ea8910cdc0d478f60a0.nii.gz/MD5E-s139683--c062376696d50ea8910cdc0d478f60a0.nii.gz

SWU_1/sub-0027215/ses-3/mri/hammers_sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/x3/VG/MD5E-s139628--26e88dd24e92230ee2ede69ee5bc1229.nii.gz/MD5E-s139628--26e88dd24e92230ee2ede69ee5bc1229.nii.gz

SWU_1/sub-0027215/ses-3/mri/ibsr_sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w3/69/MD5E-s148408--a84af36f8931c310b53503d55fcb3bef.nii.gz/MD5E-s148408--a84af36f8931c310b53503d55fcb3bef.nii.gz

SWU_1/sub-0027215/ses-3/mri/ibsr_sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027215/ses-3/mri/it_sub-0027215_ses-3_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k9/F2/MD5E-s283--35133018f239c311cc17a405ecaa2187.mat/MD5E-s283--35133018f239c311cc17a405ecaa2187.mat

SWU_1/sub-0027215/ses-3/mri/it_sub-0027215_ses-3_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/8P/MD5E-s283--db21c0c9f8b2c9f21d34d010e7d2d31b.mat/MD5E-s283--db21c0c9f8b2c9f21d34d010e7d2d31b.mat

SWU_1/sub-0027215/ses-3/mri/it_sub-0027215_ses-3_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/77/1K/MD5E-s283--3be24bd39741cb788f6f5dfd3131a86e.mat/MD5E-s283--3be24bd39741cb788f6f5dfd3131a86e.mat

SWU_1/sub-0027215/ses-3/mri/it_sub-0027215_ses-3_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/49/86/MD5E-s283--ba8e2af382c80690b22769c08ab9afbd.mat/MD5E-s283--ba8e2af382c80690b22769c08ab9afbd.mat

SWU_1/sub-0027215/ses-3/mri/iy_sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wP/21/MD5E-s42196657--7a9f2c6db0eba46191105c2374def278.nii.gz/MD5E-s42196657--7a9f2c6db0eba46191105c2374def278.nii.gz

SWU_1/sub-0027215/ses-3/mri/iy_sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kz/Kg/MD5E-s42204675--8ad2387ce65b55b349dcf7f8b9b3aab7.nii.gz/MD5E-s42204675--8ad2387ce65b55b349dcf7f8b9b3aab7.nii.gz

SWU_1/sub-0027215/ses-3/mri/julichbrain_sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/61/MK/MD5E-s186308--058eee3e283983a0d14b77f92e1b75f5.nii.gz/MD5E-s186308--058eee3e283983a0d14b77f92e1b75f5.nii.gz

SWU_1/sub-0027215/ses-3/mri/julichbrain_sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027215/ses-3/mri/lpba40_sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k0/wm/MD5E-s136155--e0b68a3efdaf3f54006784f9df384564.nii.gz/MD5E-s136155--e0b68a3efdaf3f54006784f9df384564.nii.gz

SWU_1/sub-0027215/ses-3/mri/lpba40_sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027215/ses-3/mri/m0wp1sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/97/F5/MD5E-s2591233--afdd930f2dfd6d4048a6f6a668e85c6e.nii.gz/MD5E-s2591233--afdd930f2dfd6d4048a6f6a668e85c6e.nii.gz

SWU_1/sub-0027215/ses-3/mri/m0wp1sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027215/ses-3/mri/m0wp2sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k0/pp/MD5E-s2336030--b9cac6f50119419a8ba8c3fba237a762.nii.gz/MD5E-s2336030--b9cac6f50119419a8ba8c3fba237a762.nii.gz

SWU_1/sub-0027215/ses-3/mri/m0wp2sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027215/ses-3/mri/m0wp3sub-0027215_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027215/ses-3/mri/m0wp3sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027215/ses-3/mri/mori_sub-0027215_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027215/ses-3/mri/mori_sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027215/ses-3/mri/mwp1sub-0027215_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027215/ses-3/mri/mwp1sub-0027215_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027215/ses-3/mri/mwp2sub-0027215_ses-3_run-1_T1w.nii.gz

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