[DATALAD RUNCMD] Compute NYU_2/sub-0025138/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025138/ses-1/anat/sub-0025138_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025138/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025138/ses-1/label/catROI_sub-0025138_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Q3/Zx/MD5E-s57989--3dd258a0c49fad422045d78b39f300cf.mat/MD5E-s57989--3dd258a0c49fad422045d78b39f300cf.mat

NYU_2/sub-0025138/ses-1/label/catROI_sub-0025138_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Wj/58/MD5E-s189101--3e22b08aaf5412d18f893ba948e448ec.xml/MD5E-s189101--3e22b08aaf5412d18f893ba948e448ec.xml

NYU_2/sub-0025138/ses-1/label/catROI_sub-0025138_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K0/gf/MD5E-s58029--035496d5aef0ab89adee5ce0d3e126aa.mat/MD5E-s58029--035496d5aef0ab89adee5ce0d3e126aa.mat

NYU_2/sub-0025138/ses-1/label/catROI_sub-0025138_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/56/Jz/MD5E-s188964--2e4328d543b5d1bd0307832d51de0e51.xml/MD5E-s188964--2e4328d543b5d1bd0307832d51de0e51.xml

NYU_2/sub-0025138/ses-1/label/catROIs_sub-0025138_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Q0/W7/MD5E-s120131--1bb1ad63e4a20d97b716a541a2b3dbcc.mat/MD5E-s120131--1bb1ad63e4a20d97b716a541a2b3dbcc.mat

NYU_2/sub-0025138/ses-1/label/catROIs_sub-0025138_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/F6/1k/MD5E-s332148--ae0f21dd8c51314502a4247be7f2e589.xml/MD5E-s332148--ae0f21dd8c51314502a4247be7f2e589.xml

NYU_2/sub-0025138/ses-1/label/catROIs_sub-0025138_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qg/FJ/MD5E-s120155--0181c82efb7cf1004965cf9f506d1338.mat/MD5E-s120155--0181c82efb7cf1004965cf9f506d1338.mat

NYU_2/sub-0025138/ses-1/label/catROIs_sub-0025138_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kk/7v/MD5E-s332097--a9998c49044ff74effd5a9ee57a0cbaa.xml/MD5E-s332097--a9998c49044ff74effd5a9ee57a0cbaa.xml

NYU_2/sub-0025138/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025138_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gF/px/MD5E-s143007--04f020c1c4ec0bc4e1fafe9297a93b11.nii.gz/MD5E-s143007--04f020c1c4ec0bc4e1fafe9297a93b11.nii.gz

NYU_2/sub-0025138/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025138_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025138/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025138_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xF/m9/MD5E-s158779--23c435e152d166c22d2b270ea0be323a.nii.gz/MD5E-s158779--23c435e152d166c22d2b270ea0be323a.nii.gz

NYU_2/sub-0025138/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025138_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9F/Xq/MD5E-s159060--b09e258453281f28a24930ff70c84746.nii.gz/MD5E-s159060--b09e258453281f28a24930ff70c84746.nii.gz

NYU_2/sub-0025138/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025138_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6p/67/MD5E-s215347--e529de46d78504d26675cb568658fbbb.nii.gz/MD5E-s215347--e529de46d78504d26675cb568658fbbb.nii.gz

NYU_2/sub-0025138/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025138_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025138/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025138_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/q3/kw/MD5E-s237571--14ef29af73bc36dbd200affaf8030465.nii.gz/MD5E-s237571--14ef29af73bc36dbd200affaf8030465.nii.gz

NYU_2/sub-0025138/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025138_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6F/42/MD5E-s237174--e1a910c5e6f99148d7f62842aa4ca0c4.nii.gz/MD5E-s237174--e1a910c5e6f99148d7f62842aa4ca0c4.nii.gz

NYU_2/sub-0025138/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025138_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/pG/23/MD5E-s19000--b5a102845bbd38e0aabf62026e19931e.nii.gz/MD5E-s19000--b5a102845bbd38e0aabf62026e19931e.nii.gz

NYU_2/sub-0025138/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025138_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/76/qG/MD5E-s19033--3b4596919ea5cb3c7533929be9e9d6f7.nii.gz/MD5E-s19033--3b4596919ea5cb3c7533929be9e9d6f7.nii.gz

NYU_2/sub-0025138/ses-1/mri/aal3_sub-0025138_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8g/QP/MD5E-s163758--2bb5cb1fe88ca033db5e9f655ba98836.nii.gz/MD5E-s163758--2bb5cb1fe88ca033db5e9f655ba98836.nii.gz

NYU_2/sub-0025138/ses-1/mri/aal3_sub-0025138_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7p/qQ/MD5E-s163909--c4097d452538c0188a2eda87601a2010.nii.gz/MD5E-s163909--c4097d452538c0188a2eda87601a2010.nii.gz

NYU_2/sub-0025138/ses-1/mri/anatomy3_sub-0025138_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025138/ses-1/mri/anatomy3_sub-0025138_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xV/F3/MD5E-s113104--c0165429a83bd78132b11f20346fd8a2.nii.gz/MD5E-s113104--c0165429a83bd78132b11f20346fd8a2.nii.gz

NYU_2/sub-0025138/ses-1/mri/anon_misub-0025138_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025138/ses-1/mri/anon_misub-0025138_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/anon_msub-0025138_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/anon_msub-0025138_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/cat_sub-0025138_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025138/ses-1/mri/cat_sub-0025138_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/cobra_sub-0025138_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025138/ses-1/mri/cobra_sub-0025138_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/hammers_sub-0025138_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025138/ses-1/mri/hammers_sub-0025138_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/ibsr_sub-0025138_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/ibsr_sub-0025138_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/it_sub-0025138_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025138/ses-1/mri/it_sub-0025138_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025138/ses-1/mri/it_sub-0025138_ses-1_run-2_T1w_affine_reorient.mat

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NYU_2/sub-0025138/ses-1/mri/it_sub-0025138_ses-1_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025138/ses-1/mri/iy_sub-0025138_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/iy_sub-0025138_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/julichbrain_sub-0025138_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025138/ses-1/mri/julichbrain_sub-0025138_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/lpba40_sub-0025138_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/lpba40_sub-0025138_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/m0wp1sub-0025138_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/m0wp1sub-0025138_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/m0wp2sub-0025138_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/m0wp2sub-0025138_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/m0wp3sub-0025138_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/m0wp3sub-0025138_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/mori_sub-0025138_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/mori_sub-0025138_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/mwp1sub-0025138_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/mwp1sub-0025138_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025138/ses-1/mri/mwp2sub-0025138_ses-1_run-1_T1w.nii.gz

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