[DATALAD RUNCMD] Compute NYU_2/sub-0025174/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025174/ses-1/anat/sub-0025174_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025174/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025174/ses-1/label/catROI_sub-0025174_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PF/w4/MD5E-s57926--4432645c87a0adfe1db4d4dfc978e711.mat/MD5E-s57926--4432645c87a0adfe1db4d4dfc978e711.mat

NYU_2/sub-0025174/ses-1/label/catROI_sub-0025174_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pP/3M/MD5E-s188819--c9561fd9834979d5ccedbea116d752ab.xml/MD5E-s188819--c9561fd9834979d5ccedbea116d752ab.xml

NYU_2/sub-0025174/ses-1/label/catROI_sub-0025174_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fG/5J/MD5E-s57980--648d0512441c09b003b9377661e365ed.mat/MD5E-s57980--648d0512441c09b003b9377661e365ed.mat

NYU_2/sub-0025174/ses-1/label/catROI_sub-0025174_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xK/Qf/MD5E-s188957--685664a9ee2181042768418839031578.xml/MD5E-s188957--685664a9ee2181042768418839031578.xml

NYU_2/sub-0025174/ses-1/label/catROIs_sub-0025174_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zv/Zz/MD5E-s120111--334ca1bd3761d515600b293774b3622d.mat/MD5E-s120111--334ca1bd3761d515600b293774b3622d.mat

NYU_2/sub-0025174/ses-1/label/catROIs_sub-0025174_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7V/WG/MD5E-s332107--dba75679aef50559a891689be0cc0773.xml/MD5E-s332107--dba75679aef50559a891689be0cc0773.xml

NYU_2/sub-0025174/ses-1/label/catROIs_sub-0025174_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/VF/46/MD5E-s120098--8e91b026107d9470ab4aa1185a147fc9.mat/MD5E-s120098--8e91b026107d9470ab4aa1185a147fc9.mat

NYU_2/sub-0025174/ses-1/label/catROIs_sub-0025174_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6f/F5/MD5E-s332131--4cb6f8b2409de4781d0dc607db8b9f74.xml/MD5E-s332131--4cb6f8b2409de4781d0dc607db8b9f74.xml

NYU_2/sub-0025174/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025174_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9p/79/MD5E-s151175--a175431ee9616dab214eebbaee854431.nii.gz/MD5E-s151175--a175431ee9616dab214eebbaee854431.nii.gz

NYU_2/sub-0025174/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025174_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025174/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025174_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5v/Mp/MD5E-s168881--47cf81272d979a435f9921fae1ac5408.nii.gz/MD5E-s168881--47cf81272d979a435f9921fae1ac5408.nii.gz

NYU_2/sub-0025174/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025174_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vv/jW/MD5E-s169336--4383ebd78cf807c1f7442ba7b7675680.nii.gz/MD5E-s169336--4383ebd78cf807c1f7442ba7b7675680.nii.gz

NYU_2/sub-0025174/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025174_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1v/wM/MD5E-s226833--f718740dec2376899ff6df723a6d1077.nii.gz/MD5E-s226833--f718740dec2376899ff6df723a6d1077.nii.gz

NYU_2/sub-0025174/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025174_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/v3/VQ/MD5E-s227309--1dc7ff1a3aa353dde792510e09c0c478.nii.gz/MD5E-s227309--1dc7ff1a3aa353dde792510e09c0c478.nii.gz

NYU_2/sub-0025174/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025174_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025174/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025174_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Wf/X7/MD5E-s253723--63c215100d9838cc6d18ad95b3fa2b40.nii.gz/MD5E-s253723--63c215100d9838cc6d18ad95b3fa2b40.nii.gz

NYU_2/sub-0025174/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025174_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zx/Fw/MD5E-s19979--2b5c5d643d40b41a6d0963f5403dc343.nii.gz/MD5E-s19979--2b5c5d643d40b41a6d0963f5403dc343.nii.gz

NYU_2/sub-0025174/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025174_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/14/KJ/MD5E-s19929--e1228ee2697d10850f47ae89107cbc67.nii.gz/MD5E-s19929--e1228ee2697d10850f47ae89107cbc67.nii.gz

NYU_2/sub-0025174/ses-1/mri/aal3_sub-0025174_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fP/px/MD5E-s172691--2dd9f8a61b1e01076b1b56ecc51528ef.nii.gz/MD5E-s172691--2dd9f8a61b1e01076b1b56ecc51528ef.nii.gz

NYU_2/sub-0025174/ses-1/mri/aal3_sub-0025174_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/v1/1V/MD5E-s173067--8b5edb62ed77712524171f8267b0eb4a.nii.gz/MD5E-s173067--8b5edb62ed77712524171f8267b0eb4a.nii.gz

NYU_2/sub-0025174/ses-1/mri/anatomy3_sub-0025174_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0M/pg/MD5E-s118979--47a66852d598b2f291dce036ab9ecef2.nii.gz/MD5E-s118979--47a66852d598b2f291dce036ab9ecef2.nii.gz

NYU_2/sub-0025174/ses-1/mri/anatomy3_sub-0025174_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/x5/8V/MD5E-s119369--9d67e0065a12e4671a43b5f650428cdb.nii.gz/MD5E-s119369--9d67e0065a12e4671a43b5f650428cdb.nii.gz

NYU_2/sub-0025174/ses-1/mri/anon_misub-0025174_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/anon_misub-0025174_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vx/vx/MD5E-s4531631--7676c71c5840544fb2719ce2d45b23f4.nii.gz/MD5E-s4531631--7676c71c5840544fb2719ce2d45b23f4.nii.gz

NYU_2/sub-0025174/ses-1/mri/anon_msub-0025174_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/anon_msub-0025174_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2J/q0/MD5E-s9606903--a5a262859a722e1940f20416f81c4f58.nii.gz/MD5E-s9606903--a5a262859a722e1940f20416f81c4f58.nii.gz

NYU_2/sub-0025174/ses-1/mri/cat_sub-0025174_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P1/XP/MD5E-s93016--15f01b92e395a3a5b1019e1db2cf75ec.nii.gz/MD5E-s93016--15f01b92e395a3a5b1019e1db2cf75ec.nii.gz

NYU_2/sub-0025174/ses-1/mri/cat_sub-0025174_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/f3/Pp/MD5E-s93889--5207878c8f42abf19d61c4735585cc40.nii.gz/MD5E-s93889--5207878c8f42abf19d61c4735585cc40.nii.gz

NYU_2/sub-0025174/ses-1/mri/cobra_sub-0025174_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/cobra_sub-0025174_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025174/ses-1/mri/hammers_sub-0025174_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/hammers_sub-0025174_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/ibsr_sub-0025174_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/ibsr_sub-0025174_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/it_sub-0025174_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4m/vj/MD5E-s283--c702b718e468965adf0c5860c960a291.mat/MD5E-s283--c702b718e468965adf0c5860c960a291.mat

NYU_2/sub-0025174/ses-1/mri/it_sub-0025174_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025174/ses-1/mri/it_sub-0025174_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025174/ses-1/mri/it_sub-0025174_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025174/ses-1/mri/iy_sub-0025174_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/iy_sub-0025174_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/julichbrain_sub-0025174_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/julichbrain_sub-0025174_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/lpba40_sub-0025174_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/lpba40_sub-0025174_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/m0wp1sub-0025174_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/m0wp1sub-0025174_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/m0wp2sub-0025174_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/m0wp2sub-0025174_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/m0wp3sub-0025174_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/m0wp3sub-0025174_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/mori_sub-0025174_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/mori_sub-0025174_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/mwp1sub-0025174_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/mwp1sub-0025174_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025174/ses-1/mri/mwp2sub-0025174_ses-1_run-1_T1w.nii.gz

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