[DATALAD RUNCMD] Compute NYU_2/sub-0025093/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025093/ses-1/anat/sub-0025093_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025093/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025093/ses-1/label/catROI_sub-0025093_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/WJ/X6/MD5E-s57993--16500631a0e985ea60a2a97e7507a5e6.mat/MD5E-s57993--16500631a0e985ea60a2a97e7507a5e6.mat

NYU_2/sub-0025093/ses-1/label/catROI_sub-0025093_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9f/9q/MD5E-s188676--f8869f31664f53211d3559b57df6f96e.xml/MD5E-s188676--f8869f31664f53211d3559b57df6f96e.xml

NYU_2/sub-0025093/ses-1/label/catROI_sub-0025093_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/96/1P/MD5E-s57966--c3a2981f055516a313f450ec5062e460.mat/MD5E-s57966--c3a2981f055516a313f450ec5062e460.mat

NYU_2/sub-0025093/ses-1/label/catROI_sub-0025093_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jm/fm/MD5E-s188643--be1df593d893b336c1a108f4fb1b7bff.xml/MD5E-s188643--be1df593d893b336c1a108f4fb1b7bff.xml

NYU_2/sub-0025093/ses-1/label/catROIs_sub-0025093_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zF/Q9/MD5E-s120138--5649c2a154bb0db3bbe4c832caa039f8.mat/MD5E-s120138--5649c2a154bb0db3bbe4c832caa039f8.mat

NYU_2/sub-0025093/ses-1/label/catROIs_sub-0025093_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3K/3G/MD5E-s332024--f3cc1f36bb7c238001804e4117775599.xml/MD5E-s332024--f3cc1f36bb7c238001804e4117775599.xml

NYU_2/sub-0025093/ses-1/label/catROIs_sub-0025093_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gx/MP/MD5E-s120124--db2eb1cb6c4626230e6ba0c043eb70cd.mat/MD5E-s120124--db2eb1cb6c4626230e6ba0c043eb70cd.mat

NYU_2/sub-0025093/ses-1/label/catROIs_sub-0025093_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z0/Kj/MD5E-s332142--4555b6ce224dfc9fecd7423919f5de29.xml/MD5E-s332142--4555b6ce224dfc9fecd7423919f5de29.xml

NYU_2/sub-0025093/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0G/Pg/MD5E-s155284--18f007dcd5c3c947e2f686c8cb08815e.nii.gz/MD5E-s155284--18f007dcd5c3c947e2f686c8cb08815e.nii.gz

NYU_2/sub-0025093/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025093_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1F/Xp/MD5E-s154900--e19cad77c1e1b0e3c01ceee54520e34c.nii.gz/MD5E-s154900--e19cad77c1e1b0e3c01ceee54520e34c.nii.gz

NYU_2/sub-0025093/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/WX/zv/MD5E-s172260--59df79fb54cbd4575a5fd1d73a61e8a9.nii.gz/MD5E-s172260--59df79fb54cbd4575a5fd1d73a61e8a9.nii.gz

NYU_2/sub-0025093/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025093_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gZ/1F/MD5E-s172296--35da84b9b6ebdf56a59914e727ddf45b.nii.gz/MD5E-s172296--35da84b9b6ebdf56a59914e727ddf45b.nii.gz

NYU_2/sub-0025093/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P4/01/MD5E-s231430--58ea556004141d161853965b942e6150.nii.gz/MD5E-s231430--58ea556004141d161853965b942e6150.nii.gz

NYU_2/sub-0025093/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025093_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G9/V5/MD5E-s231483--f34b4c3498da4d8ee80d8b72c452ae44.nii.gz/MD5E-s231483--f34b4c3498da4d8ee80d8b72c452ae44.nii.gz

NYU_2/sub-0025093/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6Q/qP/MD5E-s255962--fba8ce13e185b00889f5a55757a493e8.nii.gz/MD5E-s255962--fba8ce13e185b00889f5a55757a493e8.nii.gz

NYU_2/sub-0025093/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025093_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8W/fg/MD5E-s256220--bbe94631778038500156b21047146156.nii.gz/MD5E-s256220--bbe94631778038500156b21047146156.nii.gz

NYU_2/sub-0025093/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9w/kX/MD5E-s20500--9c7a17da17499e06eb8461b0e0e7c285.nii.gz/MD5E-s20500--9c7a17da17499e06eb8461b0e0e7c285.nii.gz

NYU_2/sub-0025093/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025093_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K6/kF/MD5E-s20468--7515953f727b6132ddb9e21820102850.nii.gz/MD5E-s20468--7515953f727b6132ddb9e21820102850.nii.gz

NYU_2/sub-0025093/ses-1/mri/aal3_sub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3w/PJ/MD5E-s173533--a22cec4973e30e799417ebe74e3689e9.nii.gz/MD5E-s173533--a22cec4973e30e799417ebe74e3689e9.nii.gz

NYU_2/sub-0025093/ses-1/mri/aal3_sub-0025093_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xX/wx/MD5E-s173729--e369e2737f5be10e8b842ac8e1c47b1d.nii.gz/MD5E-s173729--e369e2737f5be10e8b842ac8e1c47b1d.nii.gz

NYU_2/sub-0025093/ses-1/mri/anatomy3_sub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/GG/Zw/MD5E-s123675--797ee28ed7852e9eca7f3978511dfa67.nii.gz/MD5E-s123675--797ee28ed7852e9eca7f3978511dfa67.nii.gz

NYU_2/sub-0025093/ses-1/mri/anatomy3_sub-0025093_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5z/V1/MD5E-s124001--bc78910a71667bfcb59f8f2cd5b742e1.nii.gz/MD5E-s124001--bc78910a71667bfcb59f8f2cd5b742e1.nii.gz

NYU_2/sub-0025093/ses-1/mri/anon_misub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xf/Jg/MD5E-s4057901--7ad4cb0332d4cd2a6c592fc13a77dfe2.nii.gz/MD5E-s4057901--7ad4cb0332d4cd2a6c592fc13a77dfe2.nii.gz

NYU_2/sub-0025093/ses-1/mri/anon_misub-0025093_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m0/jp/MD5E-s4079468--4231e59352c16b03910a6aa5433c7901.nii.gz/MD5E-s4079468--4231e59352c16b03910a6aa5433c7901.nii.gz

NYU_2/sub-0025093/ses-1/mri/anon_msub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0J/67/MD5E-s7555683--3c8ea05146415a5ec6ead9995de03295.nii.gz/MD5E-s7555683--3c8ea05146415a5ec6ead9995de03295.nii.gz

NYU_2/sub-0025093/ses-1/mri/anon_msub-0025093_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2m/Km/MD5E-s9660342--c0d45f3f890f439d01dbdfea87437fb1.nii.gz/MD5E-s9660342--c0d45f3f890f439d01dbdfea87437fb1.nii.gz

NYU_2/sub-0025093/ses-1/mri/cat_sub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/mq/45/MD5E-s93697--f31198cbceac7c5be2e48c0e3630a498.nii.gz/MD5E-s93697--f31198cbceac7c5be2e48c0e3630a498.nii.gz

NYU_2/sub-0025093/ses-1/mri/cat_sub-0025093_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jM/3J/MD5E-s94183--5df62b0eb49731a02108d5152f23e44e.nii.gz/MD5E-s94183--5df62b0eb49731a02108d5152f23e44e.nii.gz

NYU_2/sub-0025093/ses-1/mri/cobra_sub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/ff/7W/MD5E-s42774--b05ebc2dda4d6786e4aa973076abf948.nii.gz/MD5E-s42774--b05ebc2dda4d6786e4aa973076abf948.nii.gz

NYU_2/sub-0025093/ses-1/mri/cobra_sub-0025093_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025093/ses-1/mri/hammers_sub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qx/4F/MD5E-s136207--aca59885feb1db7aabb6a470679cb9a5.nii.gz/MD5E-s136207--aca59885feb1db7aabb6a470679cb9a5.nii.gz

NYU_2/sub-0025093/ses-1/mri/hammers_sub-0025093_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025093/ses-1/mri/ibsr_sub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025093/ses-1/mri/ibsr_sub-0025093_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025093/ses-1/mri/it_sub-0025093_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/81/pm/MD5E-s283--f1f410a133f0932880a60d0095780941.mat/MD5E-s283--f1f410a133f0932880a60d0095780941.mat

NYU_2/sub-0025093/ses-1/mri/it_sub-0025093_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025093/ses-1/mri/it_sub-0025093_ses-1_run-2_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F6/0V/MD5E-s283--a85605ef005a3414002e55900aa9ebb4.mat/MD5E-s283--a85605ef005a3414002e55900aa9ebb4.mat

NYU_2/sub-0025093/ses-1/mri/it_sub-0025093_ses-1_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025093/ses-1/mri/iy_sub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025093/ses-1/mri/iy_sub-0025093_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025093/ses-1/mri/julichbrain_sub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025093/ses-1/mri/julichbrain_sub-0025093_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025093/ses-1/mri/lpba40_sub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025093/ses-1/mri/lpba40_sub-0025093_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025093/ses-1/mri/m0wp1sub-0025093_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025093/ses-1/mri/m0wp1sub-0025093_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025093/ses-1/mri/m0wp2sub-0025093_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025093/ses-1/mri/m0wp2sub-0025093_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025093/ses-1/mri/m0wp3sub-0025093_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025093/ses-1/mri/m0wp3sub-0025093_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025093/ses-1/mri/mori_sub-0025093_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025093/ses-1/mri/mori_sub-0025093_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025093/ses-1/mri/mwp1sub-0025093_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025093/ses-1/mri/mwp1sub-0025093_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025093/ses-1/mri/mwp2sub-0025093_ses-1_run-1_T1w.nii.gz

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