[DATALAD RUNCMD] Compute SWU_4/sub-0025661/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025661/ses-2/anat/sub-0025661_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025661/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025661/ses-2/label/catROI_sub-0025661_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pK/z9/MD5E-s61256--2c53b58fd0f77fb70c496cf3e5ec6303.mat/MD5E-s61256--2c53b58fd0f77fb70c496cf3e5ec6303.mat

SWU_4/sub-0025661/ses-2/label/catROI_sub-0025661_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vz/P3/MD5E-s189224--f5521824d643f267dd1c83b88bfc725f.xml/MD5E-s189224--f5521824d643f267dd1c83b88bfc725f.xml

SWU_4/sub-0025661/ses-2/label/catROIs_sub-0025661_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/xQ/MD5E-s120197--edfb5c567ec5e01d38722e08347e4abc.mat/MD5E-s120197--edfb5c567ec5e01d38722e08347e4abc.mat

SWU_4/sub-0025661/ses-2/label/catROIs_sub-0025661_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/zq/MD5E-s332145--78894483a4837c10db3214f6e544f50a.xml/MD5E-s332145--78894483a4837c10db3214f6e544f50a.xml

SWU_4/sub-0025661/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025661_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025661/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/59/k5/MD5E-s150077--048a41057235855dba835c0a02814892.nii.gz/MD5E-s150077--048a41057235855dba835c0a02814892.nii.gz

SWU_4/sub-0025661/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025661_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025661/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5J/m6/MD5E-s169804--8ad64cf81bd084a6d9edd17f077f7346.nii.gz/MD5E-s169804--8ad64cf81bd084a6d9edd17f077f7346.nii.gz

SWU_4/sub-0025661/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025661_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025661/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PX/w2/MD5E-s227414--26a41aa4893f592522e533cd6494c6a3.nii.gz/MD5E-s227414--26a41aa4893f592522e533cd6494c6a3.nii.gz

SWU_4/sub-0025661/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025661_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025661/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7z/kq/MD5E-s254051--07cf8582903b20a820372b7302a98d2f.nii.gz/MD5E-s254051--07cf8582903b20a820372b7302a98d2f.nii.gz

SWU_4/sub-0025661/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025661_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025661/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q2/xK/MD5E-s24143--e18cbd50e793e4642ceaaa20aee03437.nii.gz/MD5E-s24143--e18cbd50e793e4642ceaaa20aee03437.nii.gz

SWU_4/sub-0025661/ses-2/mri/aal3_sub-0025661_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025661/ses-2/mri/aal3_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5z/m3/MD5E-s175140--937935367cbb5b70f6fa2e2278069a2a.nii.gz/MD5E-s175140--937935367cbb5b70f6fa2e2278069a2a.nii.gz

SWU_4/sub-0025661/ses-2/mri/anatomy3_sub-0025661_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025661/ses-2/mri/anatomy3_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kq/j2/MD5E-s125731--7446d369f683da6a619d6a4ecd92fb5b.nii.gz/MD5E-s125731--7446d369f683da6a619d6a4ecd92fb5b.nii.gz

SWU_4/sub-0025661/ses-2/mri/anon_misub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xQ/77/MD5E-s9047782--d326c54178484da62549edec2bf001d4.nii.gz/MD5E-s9047782--d326c54178484da62549edec2bf001d4.nii.gz

SWU_4/sub-0025661/ses-2/mri/anon_msub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w0/1Q/MD5E-s10149321--f657d5102bcd492eeff9ec5f675f9ef6.nii.gz/MD5E-s10149321--f657d5102bcd492eeff9ec5f675f9ef6.nii.gz

SWU_4/sub-0025661/ses-2/mri/cat_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VF/M4/MD5E-s93110--9219f9fef0a57b8b5dff7382fe0f9415.nii.gz/MD5E-s93110--9219f9fef0a57b8b5dff7382fe0f9415.nii.gz

SWU_4/sub-0025661/ses-2/mri/cobra_sub-0025661_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025661/ses-2/mri/cobra_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v5/j5/MD5E-s46921--c767de998ac082faa72fbe27e52605dc.nii.gz/MD5E-s46921--c767de998ac082faa72fbe27e52605dc.nii.gz

SWU_4/sub-0025661/ses-2/mri/hammers_sub-0025661_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025661/ses-2/mri/hammers_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7z/7Z/MD5E-s136188--abcb9233272ef354f060b43700700ba8.nii.gz/MD5E-s136188--abcb9233272ef354f060b43700700ba8.nii.gz

SWU_4/sub-0025661/ses-2/mri/ibsr_sub-0025661_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025661/ses-2/mri/ibsr_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vq/zw/MD5E-s145230--9ca1f6df4c37dcee54b6c3588d6e9f1c.nii.gz/MD5E-s145230--9ca1f6df4c37dcee54b6c3588d6e9f1c.nii.gz

SWU_4/sub-0025661/ses-2/mri/it_sub-0025661_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fq/92/MD5E-s283--78700ef63f689a189ef873244642572e.mat/MD5E-s283--78700ef63f689a189ef873244642572e.mat

SWU_4/sub-0025661/ses-2/mri/it_sub-0025661_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/Pf/MD5E-s283--1fb9e3d08999a0c87a5bba49fc2c63c7.mat/MD5E-s283--1fb9e3d08999a0c87a5bba49fc2c63c7.mat

SWU_4/sub-0025661/ses-2/mri/iy_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qf/1z/MD5E-s41191490--6efef444ad81e2154694922126c4d5ee.nii.gz/MD5E-s41191490--6efef444ad81e2154694922126c4d5ee.nii.gz

SWU_4/sub-0025661/ses-2/mri/julichbrain_sub-0025661_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025661/ses-2/mri/julichbrain_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q6/pK/MD5E-s181154--bd7ac046972e63eba3621f39b51d5e06.nii.gz/MD5E-s181154--bd7ac046972e63eba3621f39b51d5e06.nii.gz

SWU_4/sub-0025661/ses-2/mri/lpba40_sub-0025661_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025661/ses-2/mri/lpba40_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j6/qX/MD5E-s134727--35d8e14702f58a4994b50398a68c4326.nii.gz/MD5E-s134727--35d8e14702f58a4994b50398a68c4326.nii.gz

SWU_4/sub-0025661/ses-2/mri/m0wp1sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zQ/Mg/MD5E-s2570098--6c174c8e063cbb5a259d2003a65d7c33.nii.gz/MD5E-s2570098--6c174c8e063cbb5a259d2003a65d7c33.nii.gz

SWU_4/sub-0025661/ses-2/mri/m0wp2sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/53/qQ/MD5E-s2294133--8ac46c1fa61412565fa99676d200fd6f.nii.gz/MD5E-s2294133--8ac46c1fa61412565fa99676d200fd6f.nii.gz

SWU_4/sub-0025661/ses-2/mri/m0wp3sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vG/65/MD5E-s2483931--51c63055a9051539da64429d610230e3.nii.gz/MD5E-s2483931--51c63055a9051539da64429d610230e3.nii.gz

SWU_4/sub-0025661/ses-2/mri/mori_sub-0025661_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025661/ses-2/mri/mori_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qz/XQ/MD5E-s160598--ac0ca8061863d85963697029a49b9b62.nii.gz/MD5E-s160598--ac0ca8061863d85963697029a49b9b62.nii.gz

SWU_4/sub-0025661/ses-2/mri/mwp1sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZX/00/MD5E-s2580589--a3a02182f4f94dd6e24a3d361783bb83.nii.gz/MD5E-s2580589--a3a02182f4f94dd6e24a3d361783bb83.nii.gz

SWU_4/sub-0025661/ses-2/mri/mwp2sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/wJ/MD5E-s2295746--5d96c30f5cdb942da2a629109da78367.nii.gz/MD5E-s2295746--5d96c30f5cdb942da2a629109da78367.nii.gz

SWU_4/sub-0025661/ses-2/mri/mwp3sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kG/3q/MD5E-s2481576--581498aff746f3b9cbcf81278ed7dcc7.nii.gz/MD5E-s2481576--581498aff746f3b9cbcf81278ed7dcc7.nii.gz

SWU_4/sub-0025661/ses-2/mri/neuromorphometrics_sub-0025661_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025661/ses-2/mri/neuromorphometrics_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025661/ses-2/mri/p0sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8K/VP/MD5E-s563157--40ba083174907a43da8d3ba18532cf97.nii.gz/MD5E-s563157--40ba083174907a43da8d3ba18532cf97.nii.gz

SWU_4/sub-0025661/ses-2/mri/p1sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w5/wW/MD5E-s598389--586c02fd425ed675e8e2b286ae87d875.nii.gz/MD5E-s598389--586c02fd425ed675e8e2b286ae87d875.nii.gz

SWU_4/sub-0025661/ses-2/mri/p2sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jz/pz/MD5E-s402557--0898bd9569d6095cb3c349e00ede2a13.nii.gz/MD5E-s402557--0898bd9569d6095cb3c349e00ede2a13.nii.gz

SWU_4/sub-0025661/ses-2/mri/p3sub-0025661_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025661/ses-2/mri/rp1sub-0025661_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025661/ses-2/mri/rp2sub-0025661_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025661/ses-2/mri/rp3sub-0025661_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025661/ses-2/mri/t_sub-0025661_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025661/ses-2/mri/t_sub-0025661_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025661/ses-2/mri/thalamus_sub-0025661_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025661/ses-2/mri/thalamus_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025661/ses-2/mri/wj_sub-0025661_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025661/ses-2/mri/wmisub-0025661_ses-2_run-1_T1w.nii.gz

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