[DATALAD RUNCMD] Compute BNU_2/sub-0025974/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025974/ses-2/anat/sub-0025974_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025974/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025974/ses-2/label/catROI_sub-0025974_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Q/vK/MD5E-s57795--75966cce991378a223e70810883572b2.mat/MD5E-s57795--75966cce991378a223e70810883572b2.mat

BNU_2/sub-0025974/ses-2/label/catROI_sub-0025974_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0w/39/MD5E-s188737--918733c1ce75ffeb03999f31a342854d.xml/MD5E-s188737--918733c1ce75ffeb03999f31a342854d.xml

BNU_2/sub-0025974/ses-2/label/catROIs_sub-0025974_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qW/VJ/MD5E-s120094--3926582c08a3ca953ad62b45bd387b6d.mat/MD5E-s120094--3926582c08a3ca953ad62b45bd387b6d.mat

BNU_2/sub-0025974/ses-2/label/catROIs_sub-0025974_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vW/46/MD5E-s332094--0ae7dfbc4670848e2ff3ceb13c766522.xml/MD5E-s332094--0ae7dfbc4670848e2ff3ceb13c766522.xml

BNU_2/sub-0025974/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025974_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025974/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vf/Pg/MD5E-s163063--7c1e9746e8854d1e73e8ad4fa96f291b.nii.gz/MD5E-s163063--7c1e9746e8854d1e73e8ad4fa96f291b.nii.gz

BNU_2/sub-0025974/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025974_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025974/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K4/88/MD5E-s181880--ba177881197d4d1d4d9182d2cf041ce0.nii.gz/MD5E-s181880--ba177881197d4d1d4d9182d2cf041ce0.nii.gz

BNU_2/sub-0025974/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025974_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025974/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zp/W2/MD5E-s245380--bda028da4f37ade3b8a9fe04ceca9ed6.nii.gz/MD5E-s245380--bda028da4f37ade3b8a9fe04ceca9ed6.nii.gz

BNU_2/sub-0025974/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025974_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025974/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GV/88/MD5E-s272956--2dbcd8549c3bcdc9be8948c853c33c80.nii.gz/MD5E-s272956--2dbcd8549c3bcdc9be8948c853c33c80.nii.gz

BNU_2/sub-0025974/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025974_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025974/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gk/1W/MD5E-s23960--80070b544b39e32496ec1845fa2a5fcb.nii.gz/MD5E-s23960--80070b544b39e32496ec1845fa2a5fcb.nii.gz

BNU_2/sub-0025974/ses-2/mri/aal3_sub-0025974_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025974/ses-2/mri/aal3_sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fk/7K/MD5E-s184731--879f973157979634d7f78ada86e4765f.nii.gz/MD5E-s184731--879f973157979634d7f78ada86e4765f.nii.gz

BNU_2/sub-0025974/ses-2/mri/anatomy3_sub-0025974_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025974/ses-2/mri/anatomy3_sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vQ/3x/MD5E-s133999--e44d99fa0d6b83dbdf93e275f640e192.nii.gz/MD5E-s133999--e44d99fa0d6b83dbdf93e275f640e192.nii.gz

BNU_2/sub-0025974/ses-2/mri/anon_misub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8v/QX/MD5E-s4822337--80a5e2ed37ed8558ffda59f8e8e19f87.nii.gz/MD5E-s4822337--80a5e2ed37ed8558ffda59f8e8e19f87.nii.gz

BNU_2/sub-0025974/ses-2/mri/anon_msub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KP/47/MD5E-s10662549--37f9e8174fb197561e8601f857f2c77d.nii.gz/MD5E-s10662549--37f9e8174fb197561e8601f857f2c77d.nii.gz

BNU_2/sub-0025974/ses-2/mri/cat_sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wk/5V/MD5E-s99248--5b1fc03358525df1c2fb8ee5db29104d.nii.gz/MD5E-s99248--5b1fc03358525df1c2fb8ee5db29104d.nii.gz

BNU_2/sub-0025974/ses-2/mri/cobra_sub-0025974_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025974/ses-2/mri/cobra_sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wv/gv/MD5E-s49099--7cce4b0416c5d4b24e0ddfbf923342a8.nii.gz/MD5E-s49099--7cce4b0416c5d4b24e0ddfbf923342a8.nii.gz

BNU_2/sub-0025974/ses-2/mri/hammers_sub-0025974_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025974/ses-2/mri/hammers_sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9z/1J/MD5E-s145714--3433b137d2d998e8943d686ac5370267.nii.gz/MD5E-s145714--3433b137d2d998e8943d686ac5370267.nii.gz

BNU_2/sub-0025974/ses-2/mri/ibsr_sub-0025974_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025974/ses-2/mri/ibsr_sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qG/p3/MD5E-s154621--98af7772528a769491a4e8436db084d2.nii.gz/MD5E-s154621--98af7772528a769491a4e8436db084d2.nii.gz

BNU_2/sub-0025974/ses-2/mri/it_sub-0025974_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vm/44/MD5E-s283--272245d12b2bb5e7ed898f01c0e6b226.mat/MD5E-s283--272245d12b2bb5e7ed898f01c0e6b226.mat

BNU_2/sub-0025974/ses-2/mri/it_sub-0025974_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wx/0v/MD5E-s283--430e1ac25edc6f15b8a2ff207cd80ce6.mat/MD5E-s283--430e1ac25edc6f15b8a2ff207cd80ce6.mat

BNU_2/sub-0025974/ses-2/mri/iy_sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G1/97/MD5E-s46207906--e617c94023ccb17ba499c712073ca297.nii.gz/MD5E-s46207906--e617c94023ccb17ba499c712073ca297.nii.gz

BNU_2/sub-0025974/ses-2/mri/julichbrain_sub-0025974_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025974/ses-2/mri/julichbrain_sub-0025974_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025974/ses-2/mri/lpba40_sub-0025974_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025974/ses-2/mri/lpba40_sub-0025974_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025974/ses-2/mri/m0wp1sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mP/3f/MD5E-s2575399--fc1edf0f908136ca15cc640ffbb753f1.nii.gz/MD5E-s2575399--fc1edf0f908136ca15cc640ffbb753f1.nii.gz

BNU_2/sub-0025974/ses-2/mri/m0wp2sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xm/9G/MD5E-s2276237--530de0d8dab8cdf468a25b53e0964339.nii.gz/MD5E-s2276237--530de0d8dab8cdf468a25b53e0964339.nii.gz

BNU_2/sub-0025974/ses-2/mri/m0wp3sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JW/Wk/MD5E-s2568762--9f71a680ce1f6fe5eafadb51ed3fddb5.nii.gz/MD5E-s2568762--9f71a680ce1f6fe5eafadb51ed3fddb5.nii.gz

BNU_2/sub-0025974/ses-2/mri/mori_sub-0025974_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025974/ses-2/mri/mori_sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kq/Gv/MD5E-s170064--aa80ddfbbaf7378b71242fb821b08b8f.nii.gz/MD5E-s170064--aa80ddfbbaf7378b71242fb821b08b8f.nii.gz

BNU_2/sub-0025974/ses-2/mri/mwp1sub-0025974_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025974/ses-2/mri/mwp2sub-0025974_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025974/ses-2/mri/mwp3sub-0025974_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025974/ses-2/mri/neuromorphometrics_sub-0025974_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025974/ses-2/mri/neuromorphometrics_sub-0025974_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025974/ses-2/mri/p0sub-0025974_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gF/km/MD5E-s623055--c04efa43e8c574c7b7196b8676534df4.nii.gz/MD5E-s623055--c04efa43e8c574c7b7196b8676534df4.nii.gz

BNU_2/sub-0025974/ses-2/mri/p1sub-0025974_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025974/ses-2/mri/p2sub-0025974_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025974/ses-2/mri/p3sub-0025974_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025974/ses-2/mri/rp1sub-0025974_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025974/ses-2/mri/rp2sub-0025974_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025974/ses-2/mri/rp3sub-0025974_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025974/ses-2/mri/t_sub-0025974_ses-2_run-1_T1w_affine_reorient.mat

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BNU_2/sub-0025974/ses-2/mri/t_sub-0025974_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025974/ses-2/mri/thalamus_sub-0025974_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025974/ses-2/mri/thalamus_sub-0025974_ses-2_run-1_T1w.nii.gz

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