[DATALAD RUNCMD] Compute LMU_1/sub-0025337/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_1/sub-0025337/ses-1/anat/sub-0025337_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_1/sub-0025337/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_1/sub-0025337/ses-1/label/catROI_sub-0025337_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/7W/MD5E-s57779--99a15c72389d62d0f336a7be18f36ca7.mat/MD5E-s57779--99a15c72389d62d0f336a7be18f36ca7.mat

LMU_1/sub-0025337/ses-1/label/catROI_sub-0025337_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4x/8z/MD5E-s188764--e1c9968695ed5b5c5d596b104fc9d5fc.xml/MD5E-s188764--e1c9968695ed5b5c5d596b104fc9d5fc.xml

LMU_1/sub-0025337/ses-1/label/catROIs_sub-0025337_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/Mw/MD5E-s120052--9fa158398a781888c6bd6de8163e5f41.mat/MD5E-s120052--9fa158398a781888c6bd6de8163e5f41.mat

LMU_1/sub-0025337/ses-1/label/catROIs_sub-0025337_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MM/91/MD5E-s332054--0a3b0d57f3d1c6747c5756a77b326595.xml/MD5E-s332054--0a3b0d57f3d1c6747c5756a77b326595.xml

LMU_1/sub-0025337/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025337_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_1/sub-0025337/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mz/9P/MD5E-s219309--7beb5661d17eaa4a3067fec1228fb7ae.nii.gz/MD5E-s219309--7beb5661d17eaa4a3067fec1228fb7ae.nii.gz

LMU_1/sub-0025337/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025337_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_1/sub-0025337/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7M/PM/MD5E-s244376--798f7b3c7577aaddbfb88a72fc457597.nii.gz/MD5E-s244376--798f7b3c7577aaddbfb88a72fc457597.nii.gz

LMU_1/sub-0025337/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025337_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_1/sub-0025337/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jm/m1/MD5E-s311739--9ae49622d31d39040bdfb6ce75f31348.nii.gz/MD5E-s311739--9ae49622d31d39040bdfb6ce75f31348.nii.gz

LMU_1/sub-0025337/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025337_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_1/sub-0025337/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2G/vQ/MD5E-s346687--9e062aaf20c219b1efe6bdd54dbdc055.nii.gz/MD5E-s346687--9e062aaf20c219b1efe6bdd54dbdc055.nii.gz

LMU_1/sub-0025337/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025337_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_1/sub-0025337/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jQ/0P/MD5E-s30918--e5d343ffc62f50d5870b0a71a5b9f732.nii.gz/MD5E-s30918--e5d343ffc62f50d5870b0a71a5b9f732.nii.gz

LMU_1/sub-0025337/ses-1/mri/aal3_sub-0025337_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_1/sub-0025337/ses-1/mri/aal3_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/0x/MD5E-s248698--8171eb2ac038baa2e406b626ef42f224.nii.gz/MD5E-s248698--8171eb2ac038baa2e406b626ef42f224.nii.gz

LMU_1/sub-0025337/ses-1/mri/anatomy3_sub-0025337_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_1/sub-0025337/ses-1/mri/anatomy3_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/P0/MD5E-s175867--fff54a37f83a9f177736729ac5836a84.nii.gz/MD5E-s175867--fff54a37f83a9f177736729ac5836a84.nii.gz

LMU_1/sub-0025337/ses-1/mri/anon_misub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W8/7p/MD5E-s6934764--f4078719d7405f222010c85acb2e5850.nii.gz/MD5E-s6934764--f4078719d7405f222010c85acb2e5850.nii.gz

LMU_1/sub-0025337/ses-1/mri/anon_msub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/56/MD5E-s13818390--954639a42ee1a01ed7c953141eb69538.nii.gz/MD5E-s13818390--954639a42ee1a01ed7c953141eb69538.nii.gz

LMU_1/sub-0025337/ses-1/mri/cat_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GW/G4/MD5E-s134473--986dcba516b01a40209406a53d63e428.nii.gz/MD5E-s134473--986dcba516b01a40209406a53d63e428.nii.gz

LMU_1/sub-0025337/ses-1/mri/cobra_sub-0025337_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_1/sub-0025337/ses-1/mri/cobra_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x5/98/MD5E-s61724--a54d9193364f067e87efd948fb977ab2.nii.gz/MD5E-s61724--a54d9193364f067e87efd948fb977ab2.nii.gz

LMU_1/sub-0025337/ses-1/mri/hammers_sub-0025337_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_1/sub-0025337/ses-1/mri/hammers_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gJ/5V/MD5E-s192492--e94b06f2ae6fd0589dc09177e4b5608d.nii.gz/MD5E-s192492--e94b06f2ae6fd0589dc09177e4b5608d.nii.gz

LMU_1/sub-0025337/ses-1/mri/ibsr_sub-0025337_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_1/sub-0025337/ses-1/mri/ibsr_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fk/7X/MD5E-s202674--1e81a7f28499428fcb0520cf4eb8342b.nii.gz/MD5E-s202674--1e81a7f28499428fcb0520cf4eb8342b.nii.gz

LMU_1/sub-0025337/ses-1/mri/it_sub-0025337_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vp/VP/MD5E-s282--439dfe3445fd7b31787c839966e442b3.mat/MD5E-s282--439dfe3445fd7b31787c839966e442b3.mat

LMU_1/sub-0025337/ses-1/mri/it_sub-0025337_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v7/wz/MD5E-s280--b014d6d1268f86bc1a1258f172194479.mat/MD5E-s280--b014d6d1268f86bc1a1258f172194479.mat

LMU_1/sub-0025337/ses-1/mri/iy_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g8/m3/MD5E-s58250807--2032d3098f2c256c09d05576df402f49.nii.gz/MD5E-s58250807--2032d3098f2c256c09d05576df402f49.nii.gz

LMU_1/sub-0025337/ses-1/mri/julichbrain_sub-0025337_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_1/sub-0025337/ses-1/mri/julichbrain_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7X/1g/MD5E-s260126--0a30f1903999a63a88760239a240fc51.nii.gz/MD5E-s260126--0a30f1903999a63a88760239a240fc51.nii.gz

LMU_1/sub-0025337/ses-1/mri/lpba40_sub-0025337_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_1/sub-0025337/ses-1/mri/lpba40_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9x/Mf/MD5E-s191240--c048a8294d5262f79e0da10aedfb0e06.nii.gz/MD5E-s191240--c048a8294d5262f79e0da10aedfb0e06.nii.gz

LMU_1/sub-0025337/ses-1/mri/m0wp1sub-0025337_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025337/ses-1/mri/m0wp2sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/fV/MD5E-s2319437--7ebe8f15f43b21b1a05e0ce5ffa6fce2.nii.gz/MD5E-s2319437--7ebe8f15f43b21b1a05e0ce5ffa6fce2.nii.gz

LMU_1/sub-0025337/ses-1/mri/m0wp3sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QV/M8/MD5E-s2535136--659fb395cc94674873c0557a35845ac8.nii.gz/MD5E-s2535136--659fb395cc94674873c0557a35845ac8.nii.gz

LMU_1/sub-0025337/ses-1/mri/mori_sub-0025337_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_1/sub-0025337/ses-1/mri/mori_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2G/J0/MD5E-s224156--8e8be823f66a9d6e361a16afe247a2b9.nii.gz/MD5E-s224156--8e8be823f66a9d6e361a16afe247a2b9.nii.gz

LMU_1/sub-0025337/ses-1/mri/mwp1sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KG/fz/MD5E-s2587731--8dd64b15d883ef92776b6cf9faee85f2.nii.gz/MD5E-s2587731--8dd64b15d883ef92776b6cf9faee85f2.nii.gz

LMU_1/sub-0025337/ses-1/mri/mwp2sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zk/v5/MD5E-s2319057--f93b35c448f4c1ceff0c168462cad05c.nii.gz/MD5E-s2319057--f93b35c448f4c1ceff0c168462cad05c.nii.gz

LMU_1/sub-0025337/ses-1/mri/mwp3sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025337/ses-1/mri/neuromorphometrics_sub-0025337_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_1/sub-0025337/ses-1/mri/neuromorphometrics_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025337/ses-1/mri/p0sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025337/ses-1/mri/p1sub-0025337_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025337/ses-1/mri/p2sub-0025337_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025337/ses-1/mri/p3sub-0025337_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025337/ses-1/mri/rp1sub-0025337_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025337/ses-1/mri/rp2sub-0025337_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025337/ses-1/mri/rp3sub-0025337_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025337/ses-1/mri/t_sub-0025337_ses-1_run-1_T1w_affine_reorient.mat

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LMU_1/sub-0025337/ses-1/mri/t_sub-0025337_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zW/Q8/MD5E-s282--f90b5d65812ce859ecba0d5e54cd318b.mat/MD5E-s282--f90b5d65812ce859ecba0d5e54cd318b.mat

LMU_1/sub-0025337/ses-1/mri/thalamus_sub-0025337_ses-1_run-1_T1w.csv

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LMU_1/sub-0025337/ses-1/mri/thalamus_sub-0025337_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025337/ses-1/mri/wj_sub-0025337_ses-1_run-1_T1w.nii.gz

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