[DATALAD RUNCMD] Compute SWU_4/sub-0025687/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025687/ses-2/anat/sub-0025687_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025687/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025687/ses-2/label/catROI_sub-0025687_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qk/3m/MD5E-s61364--5aff89de375c9cc32a2bde0b73279f44.mat/MD5E-s61364--5aff89de375c9cc32a2bde0b73279f44.mat

SWU_4/sub-0025687/ses-2/label/catROI_sub-0025687_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X9/0f/MD5E-s188769--150c30260af1807ab9e798d5adf55469.xml/MD5E-s188769--150c30260af1807ab9e798d5adf55469.xml

SWU_4/sub-0025687/ses-2/label/catROIs_sub-0025687_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qx/39/MD5E-s120047--090a9f2a22db94fe9b9a3b414fb78c9f.mat/MD5E-s120047--090a9f2a22db94fe9b9a3b414fb78c9f.mat

SWU_4/sub-0025687/ses-2/label/catROIs_sub-0025687_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4z/4K/MD5E-s332133--eaedbebacede5dc777dc793d4634cb50.xml/MD5E-s332133--eaedbebacede5dc777dc793d4634cb50.xml

SWU_4/sub-0025687/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025687_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025687/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pk/Gf/MD5E-s183715--5efdd4523948f610bd2fc002d55ad646.nii.gz/MD5E-s183715--5efdd4523948f610bd2fc002d55ad646.nii.gz

SWU_4/sub-0025687/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025687_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025687/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qz/29/MD5E-s205351--e8eac6e0e558308cc1df6f7dc8197cdc.nii.gz/MD5E-s205351--e8eac6e0e558308cc1df6f7dc8197cdc.nii.gz

SWU_4/sub-0025687/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025687_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025687/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZW/P5/MD5E-s275952--8fc39003cd790c20fde9a21bedcab515.nii.gz/MD5E-s275952--8fc39003cd790c20fde9a21bedcab515.nii.gz

SWU_4/sub-0025687/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025687_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025687/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wv/WQ/MD5E-s306022--ba72b5d7a255d9b2ecfd9690bb283523.nii.gz/MD5E-s306022--ba72b5d7a255d9b2ecfd9690bb283523.nii.gz

SWU_4/sub-0025687/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025687_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025687/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Q/8P/MD5E-s25929--efbcd0794a01d72d6e0be486c6cf285e.nii.gz/MD5E-s25929--efbcd0794a01d72d6e0be486c6cf285e.nii.gz

SWU_4/sub-0025687/ses-2/mri/aal3_sub-0025687_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025687/ses-2/mri/aal3_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1p/qq/MD5E-s207053--04ffa33cd9b4a0b617580f48c3ae44df.nii.gz/MD5E-s207053--04ffa33cd9b4a0b617580f48c3ae44df.nii.gz

SWU_4/sub-0025687/ses-2/mri/anatomy3_sub-0025687_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025687/ses-2/mri/anatomy3_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FP/j9/MD5E-s149314--80ab3a65c6c3643c35c1c061b82ba69e.nii.gz/MD5E-s149314--80ab3a65c6c3643c35c1c061b82ba69e.nii.gz

SWU_4/sub-0025687/ses-2/mri/anon_misub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9M/9Q/MD5E-s10175461--173ce8b0490c59a3db11ad501bff5b6c.nii.gz/MD5E-s10175461--173ce8b0490c59a3db11ad501bff5b6c.nii.gz

SWU_4/sub-0025687/ses-2/mri/anon_msub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jv/JG/MD5E-s11400865--5e343a9b4f39e76ab669db309b553977.nii.gz/MD5E-s11400865--5e343a9b4f39e76ab669db309b553977.nii.gz

SWU_4/sub-0025687/ses-2/mri/cat_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Z/W3/MD5E-s109514--655d273576ac89945cfe553ad45b20cd.nii.gz/MD5E-s109514--655d273576ac89945cfe553ad45b20cd.nii.gz

SWU_4/sub-0025687/ses-2/mri/cobra_sub-0025687_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025687/ses-2/mri/cobra_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mq/q3/MD5E-s50795--225d865b9256d68041e427addb97eda3.nii.gz/MD5E-s50795--225d865b9256d68041e427addb97eda3.nii.gz

SWU_4/sub-0025687/ses-2/mri/hammers_sub-0025687_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025687/ses-2/mri/hammers_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/px/Jw/MD5E-s161206--af92469df2f207857c4ac6699d47c08e.nii.gz/MD5E-s161206--af92469df2f207857c4ac6699d47c08e.nii.gz

SWU_4/sub-0025687/ses-2/mri/ibsr_sub-0025687_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025687/ses-2/mri/ibsr_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FQ/PV/MD5E-s170502--b138df33c61e540790780be07a3fc887.nii.gz/MD5E-s170502--b138df33c61e540790780be07a3fc887.nii.gz

SWU_4/sub-0025687/ses-2/mri/it_sub-0025687_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gj/Kx/MD5E-s283--229666d082bbe8658aab66be47ea0bbb.mat/MD5E-s283--229666d082bbe8658aab66be47ea0bbb.mat

SWU_4/sub-0025687/ses-2/mri/it_sub-0025687_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wK/fV/MD5E-s282--16a7ded0209c43eccde0bc737e6dd99c.mat/MD5E-s282--16a7ded0209c43eccde0bc737e6dd99c.mat

SWU_4/sub-0025687/ses-2/mri/iy_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/27/kK/MD5E-s52371181--f434df286a521c80582dd67801343ed7.nii.gz/MD5E-s52371181--f434df286a521c80582dd67801343ed7.nii.gz

SWU_4/sub-0025687/ses-2/mri/julichbrain_sub-0025687_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025687/ses-2/mri/julichbrain_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X8/3J/MD5E-s220212--88be6e2d0e26a297f200e107965f9f41.nii.gz/MD5E-s220212--88be6e2d0e26a297f200e107965f9f41.nii.gz

SWU_4/sub-0025687/ses-2/mri/lpba40_sub-0025687_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025687/ses-2/mri/lpba40_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7G/j9/MD5E-s156710--69c2dac20c90f77f4942949abb5dc07f.nii.gz/MD5E-s156710--69c2dac20c90f77f4942949abb5dc07f.nii.gz

SWU_4/sub-0025687/ses-2/mri/m0wp1sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kf/Qg/MD5E-s2583967--dc4987ffa1677dfb6cb13140897ac952.nii.gz/MD5E-s2583967--dc4987ffa1677dfb6cb13140897ac952.nii.gz

SWU_4/sub-0025687/ses-2/mri/m0wp2sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fw/PQ/MD5E-s2306571--99729597709c524b9632b07ad1aae795.nii.gz/MD5E-s2306571--99729597709c524b9632b07ad1aae795.nii.gz

SWU_4/sub-0025687/ses-2/mri/m0wp3sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wq/pp/MD5E-s2584544--41a112ee2dd718bde1b21c4dd093de5e.nii.gz/MD5E-s2584544--41a112ee2dd718bde1b21c4dd093de5e.nii.gz

SWU_4/sub-0025687/ses-2/mri/mori_sub-0025687_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025687/ses-2/mri/mori_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K9/jP/MD5E-s189788--8e68ca3dfe922ebdce0e287f6244a764.nii.gz/MD5E-s189788--8e68ca3dfe922ebdce0e287f6244a764.nii.gz

SWU_4/sub-0025687/ses-2/mri/mwp1sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FK/f0/MD5E-s2584564--87d7581ce01a2ff75aa660185cae2647.nii.gz/MD5E-s2584564--87d7581ce01a2ff75aa660185cae2647.nii.gz

SWU_4/sub-0025687/ses-2/mri/mwp2sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WF/9K/MD5E-s2303570--d65ad7a780df89fd43035d4cc62a27ca.nii.gz/MD5E-s2303570--d65ad7a780df89fd43035d4cc62a27ca.nii.gz

SWU_4/sub-0025687/ses-2/mri/mwp3sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6W/Z0/MD5E-s2583839--7c3125e4a22587c8db58c1d862902b20.nii.gz/MD5E-s2583839--7c3125e4a22587c8db58c1d862902b20.nii.gz

SWU_4/sub-0025687/ses-2/mri/neuromorphometrics_sub-0025687_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025687/ses-2/mri/neuromorphometrics_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vk/9m/MD5E-s219144--e0886bdda3896f946a5f2203cde2150f.nii.gz/MD5E-s219144--e0886bdda3896f946a5f2203cde2150f.nii.gz

SWU_4/sub-0025687/ses-2/mri/p0sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025687/ses-2/mri/p1sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mv/K6/MD5E-s767751--efbec4b231f154c709e89024456ec3c3.nii.gz/MD5E-s767751--efbec4b231f154c709e89024456ec3c3.nii.gz

SWU_4/sub-0025687/ses-2/mri/p2sub-0025687_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025687/ses-2/mri/p3sub-0025687_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025687/ses-2/mri/rp1sub-0025687_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025687/ses-2/mri/rp2sub-0025687_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025687/ses-2/mri/rp3sub-0025687_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025687/ses-2/mri/t_sub-0025687_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025687/ses-2/mri/t_sub-0025687_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025687/ses-2/mri/thalamus_sub-0025687_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025687/ses-2/mri/thalamus_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025687/ses-2/mri/wj_sub-0025687_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kF/K4/MD5E-s5562787--6615e7c5785f278735c7567f913f9322.nii.gz/MD5E-s5562787--6615e7c5785f278735c7567f913f9322.nii.gz

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