[DATALAD RUNCMD] Compute SWU_4/sub-0025791/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025791/ses-1/anat/sub-0025791_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025791/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025791/ses-1/label/catROI_sub-0025791_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M1/m5/MD5E-s61256--6000de357bddfa2ea6cf0bddd8b0fcbb.mat/MD5E-s61256--6000de357bddfa2ea6cf0bddd8b0fcbb.mat

SWU_4/sub-0025791/ses-1/label/catROI_sub-0025791_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/Fx/MD5E-s188713--5511e4d3e8621d201b38c56e48b7584e.xml/MD5E-s188713--5511e4d3e8621d201b38c56e48b7584e.xml

SWU_4/sub-0025791/ses-1/label/catROIs_sub-0025791_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XM/wx/MD5E-s120162--7c6b15c24d0c884834a388474daf0ae4.mat/MD5E-s120162--7c6b15c24d0c884834a388474daf0ae4.mat

SWU_4/sub-0025791/ses-1/label/catROIs_sub-0025791_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w3/f7/MD5E-s332206--0f0f7f6093e4d2da0f3caa13c57ef8f5.xml/MD5E-s332206--0f0f7f6093e4d2da0f3caa13c57ef8f5.xml

SWU_4/sub-0025791/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025791_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025791/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GZ/pm/MD5E-s169958--827684733a938fbc276724ec81f7c475.nii.gz/MD5E-s169958--827684733a938fbc276724ec81f7c475.nii.gz

SWU_4/sub-0025791/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025791_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025791/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X9/3p/MD5E-s189480--6c132521a65366d99726577095f1ca67.nii.gz/MD5E-s189480--6c132521a65366d99726577095f1ca67.nii.gz

SWU_4/sub-0025791/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025791_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025791/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3F/3Z/MD5E-s256264--d71349612e491c258ff5b5e5ef720bee.nii.gz/MD5E-s256264--d71349612e491c258ff5b5e5ef720bee.nii.gz

SWU_4/sub-0025791/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025791_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025791/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/55/gq/MD5E-s283373--b7cdf7f2985ebfbd3358f694141e347e.nii.gz/MD5E-s283373--b7cdf7f2985ebfbd3358f694141e347e.nii.gz

SWU_4/sub-0025791/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025791_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025791/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/15/5p/MD5E-s25358--5f95accee6348bb451abc1cab076fed9.nii.gz/MD5E-s25358--5f95accee6348bb451abc1cab076fed9.nii.gz

SWU_4/sub-0025791/ses-1/mri/aal3_sub-0025791_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025791/ses-1/mri/aal3_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gM/1K/MD5E-s191793--940dcd1bfb9f58d50e4d702c4cb4a1ca.nii.gz/MD5E-s191793--940dcd1bfb9f58d50e4d702c4cb4a1ca.nii.gz

SWU_4/sub-0025791/ses-1/mri/anatomy3_sub-0025791_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025791/ses-1/mri/anatomy3_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PM/gQ/MD5E-s137739--feff97357e1fdd91cf5e6dd5761bb39a.nii.gz/MD5E-s137739--feff97357e1fdd91cf5e6dd5761bb39a.nii.gz

SWU_4/sub-0025791/ses-1/mri/anon_misub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5q/43/MD5E-s9394634--36e263fc8fef7803ddcc819b73aa6478.nii.gz/MD5E-s9394634--36e263fc8fef7803ddcc819b73aa6478.nii.gz

SWU_4/sub-0025791/ses-1/mri/anon_msub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x4/wW/MD5E-s10326216--0fd82c54f518d7702f2df76e4ab40208.nii.gz/MD5E-s10326216--0fd82c54f518d7702f2df76e4ab40208.nii.gz

SWU_4/sub-0025791/ses-1/mri/cat_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xp/1W/MD5E-s101638--3a678dafdfef95e51d6b9dadd57027ea.nii.gz/MD5E-s101638--3a678dafdfef95e51d6b9dadd57027ea.nii.gz

SWU_4/sub-0025791/ses-1/mri/cobra_sub-0025791_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025791/ses-1/mri/cobra_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9j/3X/MD5E-s48731--5d8bd0d307292ee81df650934a02d0ee.nii.gz/MD5E-s48731--5d8bd0d307292ee81df650934a02d0ee.nii.gz

SWU_4/sub-0025791/ses-1/mri/hammers_sub-0025791_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025791/ses-1/mri/hammers_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/qk/MD5E-s149601--34fb0a18d79140d0cb6a9a83fef8abc8.nii.gz/MD5E-s149601--34fb0a18d79140d0cb6a9a83fef8abc8.nii.gz

SWU_4/sub-0025791/ses-1/mri/ibsr_sub-0025791_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025791/ses-1/mri/ibsr_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G9/Pf/MD5E-s158595--e7ddcd8290641b3a30cb03bb919a43f5.nii.gz/MD5E-s158595--e7ddcd8290641b3a30cb03bb919a43f5.nii.gz

SWU_4/sub-0025791/ses-1/mri/it_sub-0025791_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xz/gP/MD5E-s283--995ddc970858e078688b6bfe684cf029.mat/MD5E-s283--995ddc970858e078688b6bfe684cf029.mat

SWU_4/sub-0025791/ses-1/mri/it_sub-0025791_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7W/Fk/MD5E-s282--5dee6d0bd79980a043f8a56ded46bd32.mat/MD5E-s282--5dee6d0bd79980a043f8a56ded46bd32.mat

SWU_4/sub-0025791/ses-1/mri/iy_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XV/GJ/MD5E-s47479333--f9813336371e6dead8d187f90f52e532.nii.gz/MD5E-s47479333--f9813336371e6dead8d187f90f52e532.nii.gz

SWU_4/sub-0025791/ses-1/mri/julichbrain_sub-0025791_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025791/ses-1/mri/julichbrain_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1K/qW/MD5E-s202943--631f1165934eac4fef53ecb151df2c54.nii.gz/MD5E-s202943--631f1165934eac4fef53ecb151df2c54.nii.gz

SWU_4/sub-0025791/ses-1/mri/lpba40_sub-0025791_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025791/ses-1/mri/lpba40_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6X/Z4/MD5E-s145941--1fe1b6bfc6dc2931a27c85c61045b75e.nii.gz/MD5E-s145941--1fe1b6bfc6dc2931a27c85c61045b75e.nii.gz

SWU_4/sub-0025791/ses-1/mri/m0wp1sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/Qj/MD5E-s2576539--739fb335e8970ba3ab77cd1d8c128701.nii.gz/MD5E-s2576539--739fb335e8970ba3ab77cd1d8c128701.nii.gz

SWU_4/sub-0025791/ses-1/mri/m0wp2sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/84/M6/MD5E-s2297640--a765a2d7548576d08ea9a8e93a4cbeab.nii.gz/MD5E-s2297640--a765a2d7548576d08ea9a8e93a4cbeab.nii.gz

SWU_4/sub-0025791/ses-1/mri/m0wp3sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xw/gQ/MD5E-s2482319--2fe2bce5b21c0af392943124012e91ac.nii.gz/MD5E-s2482319--2fe2bce5b21c0af392943124012e91ac.nii.gz

SWU_4/sub-0025791/ses-1/mri/mori_sub-0025791_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025791/ses-1/mri/mori_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4W/Kf/MD5E-s177798--a0653adddd62dfc1bb5a6e8521e701e6.nii.gz/MD5E-s177798--a0653adddd62dfc1bb5a6e8521e701e6.nii.gz

SWU_4/sub-0025791/ses-1/mri/mwp1sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/8x/MD5E-s2580043--b0de745d237e88e9b48d71b3af4eb0b9.nii.gz/MD5E-s2580043--b0de745d237e88e9b48d71b3af4eb0b9.nii.gz

SWU_4/sub-0025791/ses-1/mri/mwp2sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pz/jF/MD5E-s2294168--b7103e6aff781f261ae18186afe776cc.nii.gz/MD5E-s2294168--b7103e6aff781f261ae18186afe776cc.nii.gz

SWU_4/sub-0025791/ses-1/mri/mwp3sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FX/mX/MD5E-s2480470--606f8ae68963be5b316d828a7998cec0.nii.gz/MD5E-s2480470--606f8ae68963be5b316d828a7998cec0.nii.gz

SWU_4/sub-0025791/ses-1/mri/neuromorphometrics_sub-0025791_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025791/ses-1/mri/neuromorphometrics_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qg/8x/MD5E-s203367--bbad904baa802929c5cfe41939a7cde8.nii.gz/MD5E-s203367--bbad904baa802929c5cfe41939a7cde8.nii.gz

SWU_4/sub-0025791/ses-1/mri/p0sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2z/0m/MD5E-s644773--e49b48387f71d2d8dc65fdfda9a09807.nii.gz/MD5E-s644773--e49b48387f71d2d8dc65fdfda9a09807.nii.gz

SWU_4/sub-0025791/ses-1/mri/p1sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025791/ses-1/mri/p2sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FW/9Z/MD5E-s460032--8d94380e58a7c6bf55b0eee8b4fd13a9.nii.gz/MD5E-s460032--8d94380e58a7c6bf55b0eee8b4fd13a9.nii.gz

SWU_4/sub-0025791/ses-1/mri/p3sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q0/0p/MD5E-s375917--e16160840a7012d66491b1084b2a9c72.nii.gz/MD5E-s375917--e16160840a7012d66491b1084b2a9c72.nii.gz

SWU_4/sub-0025791/ses-1/mri/rp1sub-0025791_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2K/PK/MD5E-s444330--5e290bc7137df651914e793c78ff6759.nii.gz/MD5E-s444330--5e290bc7137df651914e793c78ff6759.nii.gz

SWU_4/sub-0025791/ses-1/mri/rp2sub-0025791_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025791/ses-1/mri/rp3sub-0025791_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025791/ses-1/mri/t_sub-0025791_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025791/ses-1/mri/t_sub-0025791_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GV/z3/MD5E-s283--4147ed6e7fb81f9f6b3c0f80e8a5e3e8.mat/MD5E-s283--4147ed6e7fb81f9f6b3c0f80e8a5e3e8.mat

SWU_4/sub-0025791/ses-1/mri/thalamus_sub-0025791_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025791/ses-1/mri/thalamus_sub-0025791_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025791/ses-1/mri/wj_sub-0025791_ses-1_run-1_T1w.nii.gz

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