[DATALAD RUNCMD] Compute SWU_1/sub-0027211/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027211/ses-2/anat/sub-0027211_ses-2_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027211/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027211/ses-2/label/catROI_sub-0027211_ses-2_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vx/Gk/MD5E-s58428--8e468919ed17339a91123964f934567a.mat/MD5E-s58428--8e468919ed17339a91123964f934567a.mat

SWU_1/sub-0027211/ses-2/label/catROI_sub-0027211_ses-2_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fm/V8/MD5E-s188917--2261cb1a807aeb461968657cac467501.xml/MD5E-s188917--2261cb1a807aeb461968657cac467501.xml

SWU_1/sub-0027211/ses-2/label/catROI_sub-0027211_ses-2_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pP/6q/MD5E-s58305--83426c5fcddbedde881867fef668540e.mat/MD5E-s58305--83426c5fcddbedde881867fef668540e.mat

SWU_1/sub-0027211/ses-2/label/catROI_sub-0027211_ses-2_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k9/XX/MD5E-s188892--7c70b5f6ff2c91fe43b1a0609c82a3fa.xml/MD5E-s188892--7c70b5f6ff2c91fe43b1a0609c82a3fa.xml

SWU_1/sub-0027211/ses-2/label/catROIs_sub-0027211_ses-2_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xq/77/MD5E-s120173--9daf8f7a80850e61ac326f64508534e8.mat/MD5E-s120173--9daf8f7a80850e61ac326f64508534e8.mat

SWU_1/sub-0027211/ses-2/label/catROIs_sub-0027211_ses-2_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9F/76/MD5E-s332137--04d50abb2b3a4e641d4c37d4981e1e76.xml/MD5E-s332137--04d50abb2b3a4e641d4c37d4981e1e76.xml

SWU_1/sub-0027211/ses-2/label/catROIs_sub-0027211_ses-2_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gm/Gv/MD5E-s120107--cd80c8004f16e4fd587cae4f397758b9.mat/MD5E-s120107--cd80c8004f16e4fd587cae4f397758b9.mat

SWU_1/sub-0027211/ses-2/label/catROIs_sub-0027211_ses-2_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4P/qp/MD5E-s332104--fe75491900b25b234bda9a17318f3642.xml/MD5E-s332104--fe75491900b25b234bda9a17318f3642.xml

SWU_1/sub-0027211/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gw/K2/MD5E-s163132--951d262c383cf53c5744c203bc7f3d38.nii.gz/MD5E-s163132--951d262c383cf53c5744c203bc7f3d38.nii.gz

SWU_1/sub-0027211/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027211_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027211/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Qm/2Z/MD5E-s182060--e925a97f7c6fd9b0a545a605065cb287.nii.gz/MD5E-s182060--e925a97f7c6fd9b0a545a605065cb287.nii.gz

SWU_1/sub-0027211/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027211_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/87/jG/MD5E-s183415--c318c4af213db70218f6659b50709767.nii.gz/MD5E-s183415--c318c4af213db70218f6659b50709767.nii.gz

SWU_1/sub-0027211/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/W9/Qf/MD5E-s247264--fa371efa1be3255c4c7c0e423bf6619c.nii.gz/MD5E-s247264--fa371efa1be3255c4c7c0e423bf6619c.nii.gz

SWU_1/sub-0027211/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027211_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027211/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027211/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027211_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zx/5Z/MD5E-s275584--83a880a303b223b83e68addf99eab7c8.nii.gz/MD5E-s275584--83a880a303b223b83e68addf99eab7c8.nii.gz

SWU_1/sub-0027211/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/16/6x/MD5E-s24987--7d0dda2e419dae4b361d07564ebfc1cd.nii.gz/MD5E-s24987--7d0dda2e419dae4b361d07564ebfc1cd.nii.gz

SWU_1/sub-0027211/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027211_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/26/K9/MD5E-s25058--157952bf268ea582a91dbe7f130e7cc6.nii.gz/MD5E-s25058--157952bf268ea582a91dbe7f130e7cc6.nii.gz

SWU_1/sub-0027211/ses-2/mri/aal3_sub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/pW/7k/MD5E-s185833--90c05ffacf36f13de2132684dbcfa2a9.nii.gz/MD5E-s185833--90c05ffacf36f13de2132684dbcfa2a9.nii.gz

SWU_1/sub-0027211/ses-2/mri/aal3_sub-0027211_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J3/V7/MD5E-s187685--f7ad5311397cc800d9259c7d6f2b3086.nii.gz/MD5E-s187685--f7ad5311397cc800d9259c7d6f2b3086.nii.gz

SWU_1/sub-0027211/ses-2/mri/anatomy3_sub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027211/ses-2/mri/anatomy3_sub-0027211_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2m/4z/MD5E-s134095--86c86b7bfee377f6b8068a7b15057f36.nii.gz/MD5E-s134095--86c86b7bfee377f6b8068a7b15057f36.nii.gz

SWU_1/sub-0027211/ses-2/mri/anon_misub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027211/ses-2/mri/anon_misub-0027211_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pP/m9/MD5E-s10427703--4c50a6ca3184ffd7a7e874add3438574.nii.gz/MD5E-s10427703--4c50a6ca3184ffd7a7e874add3438574.nii.gz

SWU_1/sub-0027211/ses-2/mri/anon_msub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027211/ses-2/mri/anon_msub-0027211_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/cat_sub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qW/9p/MD5E-s102373--82a6574903d4df466e6e49495bb810a4.nii.gz/MD5E-s102373--82a6574903d4df466e6e49495bb810a4.nii.gz

SWU_1/sub-0027211/ses-2/mri/cat_sub-0027211_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027211/ses-2/mri/cobra_sub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027211/ses-2/mri/cobra_sub-0027211_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/hammers_sub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027211/ses-2/mri/hammers_sub-0027211_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/ibsr_sub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027211/ses-2/mri/ibsr_sub-0027211_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/it_sub-0027211_ses-2_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027211/ses-2/mri/it_sub-0027211_ses-2_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027211/ses-2/mri/it_sub-0027211_ses-2_run-2_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_1/sub-0027211/ses-2/mri/it_sub-0027211_ses-2_run-2_T1w_rigid_reorient.mat

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SWU_1/sub-0027211/ses-2/mri/iy_sub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027211/ses-2/mri/iy_sub-0027211_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/julichbrain_sub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027211/ses-2/mri/julichbrain_sub-0027211_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/lpba40_sub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027211/ses-2/mri/lpba40_sub-0027211_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/m0wp1sub-0027211_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027211/ses-2/mri/m0wp1sub-0027211_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/m0wp2sub-0027211_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/m0wp2sub-0027211_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/m0wp3sub-0027211_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/m0wp3sub-0027211_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/mori_sub-0027211_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/mori_sub-0027211_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/mwp1sub-0027211_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/mwp1sub-0027211_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027211/ses-2/mri/mwp2sub-0027211_ses-2_run-1_T1w.nii.gz

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