[DATALAD RUNCMD] Compute NYU_2/sub-0025185/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025185/ses-1/anat/sub-0025185_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025185/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025185/ses-1/label/catROI_sub-0025185_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/vj/MD5E-s58006--e5ecaf02a7d70cf847127b4bbb9b5246.mat/MD5E-s58006--e5ecaf02a7d70cf847127b4bbb9b5246.mat

NYU_2/sub-0025185/ses-1/label/catROI_sub-0025185_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qq/0q/MD5E-s188637--a5e3e86d01c691e3b8dc9f0f57ca86b8.xml/MD5E-s188637--a5e3e86d01c691e3b8dc9f0f57ca86b8.xml

NYU_2/sub-0025185/ses-1/label/catROIs_sub-0025185_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wq/5P/MD5E-s120289--5ab2fe52184e5d8d39d80153545f9daf.mat/MD5E-s120289--5ab2fe52184e5d8d39d80153545f9daf.mat

NYU_2/sub-0025185/ses-1/label/catROIs_sub-0025185_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kQ/5Z/MD5E-s332151--3844a801616e2c3b880d1f005a9397f6.xml/MD5E-s332151--3844a801616e2c3b880d1f005a9397f6.xml

NYU_2/sub-0025185/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025185/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/zZ/MD5E-s151106--efeacc8cfa5901f0943e838c94647e90.nii.gz/MD5E-s151106--efeacc8cfa5901f0943e838c94647e90.nii.gz

NYU_2/sub-0025185/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025185/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k7/0k/MD5E-s167141--310b2572d1c4060acb964a9c921f5041.nii.gz/MD5E-s167141--310b2572d1c4060acb964a9c921f5041.nii.gz

NYU_2/sub-0025185/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025185/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jp/Zg/MD5E-s225290--06f3e087fc8c966182f1649016a2f71b.nii.gz/MD5E-s225290--06f3e087fc8c966182f1649016a2f71b.nii.gz

NYU_2/sub-0025185/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025185/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2q/6W/MD5E-s247932--32ae6a141311987e128787cc27f8eafb.nii.gz/MD5E-s247932--32ae6a141311987e128787cc27f8eafb.nii.gz

NYU_2/sub-0025185/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025185/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V7/pk/MD5E-s20305--6e90a4bff32ead3e1b80ac9fe5011c51.nii.gz/MD5E-s20305--6e90a4bff32ead3e1b80ac9fe5011c51.nii.gz

NYU_2/sub-0025185/ses-1/mri/aal3_sub-0025185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025185/ses-1/mri/aal3_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vG/Zm/MD5E-s167723--502a1b18bab7ab8edbe91f3686e1512c.nii.gz/MD5E-s167723--502a1b18bab7ab8edbe91f3686e1512c.nii.gz

NYU_2/sub-0025185/ses-1/mri/anatomy3_sub-0025185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025185/ses-1/mri/anatomy3_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W7/QM/MD5E-s120529--60c2085fe3a1de425eee2bb843142cdf.nii.gz/MD5E-s120529--60c2085fe3a1de425eee2bb843142cdf.nii.gz

NYU_2/sub-0025185/ses-1/mri/anon_misub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0K/7M/MD5E-s3568412--d38605cbfdecf6c3d6652222ee7d50fb.nii.gz/MD5E-s3568412--d38605cbfdecf6c3d6652222ee7d50fb.nii.gz

NYU_2/sub-0025185/ses-1/mri/anon_msub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gk/m7/MD5E-s7382217--4e081b9a227a212a62fea005aa92362a.nii.gz/MD5E-s7382217--4e081b9a227a212a62fea005aa92362a.nii.gz

NYU_2/sub-0025185/ses-1/mri/cat_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/F3/MD5E-s92712--aa41f6ef3af6e58a9cabd11c80091861.nii.gz/MD5E-s92712--aa41f6ef3af6e58a9cabd11c80091861.nii.gz

NYU_2/sub-0025185/ses-1/mri/cobra_sub-0025185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025185/ses-1/mri/cobra_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XM/wK/MD5E-s41287--94f40b743535e8cb22ac6e3eb8898079.nii.gz/MD5E-s41287--94f40b743535e8cb22ac6e3eb8898079.nii.gz

NYU_2/sub-0025185/ses-1/mri/hammers_sub-0025185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025185/ses-1/mri/hammers_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kq/pK/MD5E-s131445--83e4002ebb30b6203363e9e0ed0bacb8.nii.gz/MD5E-s131445--83e4002ebb30b6203363e9e0ed0bacb8.nii.gz

NYU_2/sub-0025185/ses-1/mri/ibsr_sub-0025185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025185/ses-1/mri/ibsr_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k6/mX/MD5E-s139022--45151dbaeb687c99d798c7e6ef80e453.nii.gz/MD5E-s139022--45151dbaeb687c99d798c7e6ef80e453.nii.gz

NYU_2/sub-0025185/ses-1/mri/it_sub-0025185_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z8/wM/MD5E-s284--2eba1d2154ce65539de59400d6740301.mat/MD5E-s284--2eba1d2154ce65539de59400d6740301.mat

NYU_2/sub-0025185/ses-1/mri/it_sub-0025185_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7x/qJ/MD5E-s284--f32761f3189e15c4050b1b8d09cd4308.mat/MD5E-s284--f32761f3189e15c4050b1b8d09cd4308.mat

NYU_2/sub-0025185/ses-1/mri/iy_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6F/4x/MD5E-s32666005--fe8f2436c2e7773e1e623f16378508a0.nii.gz/MD5E-s32666005--fe8f2436c2e7773e1e623f16378508a0.nii.gz

NYU_2/sub-0025185/ses-1/mri/julichbrain_sub-0025185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025185/ses-1/mri/julichbrain_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k5/4q/MD5E-s178872--4b7469cb844cdf843ddf1a285715e181.nii.gz/MD5E-s178872--4b7469cb844cdf843ddf1a285715e181.nii.gz

NYU_2/sub-0025185/ses-1/mri/lpba40_sub-0025185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025185/ses-1/mri/lpba40_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5X/j1/MD5E-s128792--f230ed7e0811845fa83437db965720f6.nii.gz/MD5E-s128792--f230ed7e0811845fa83437db965720f6.nii.gz

NYU_2/sub-0025185/ses-1/mri/m0wp1sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0F/6J/MD5E-s2619498--43a2c93c52fcd7522fcaeb58eff9cba3.nii.gz/MD5E-s2619498--43a2c93c52fcd7522fcaeb58eff9cba3.nii.gz

NYU_2/sub-0025185/ses-1/mri/m0wp2sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zz/QZ/MD5E-s2267861--c662d633a6ff577fcce4231c33b7bb3f.nii.gz/MD5E-s2267861--c662d633a6ff577fcce4231c33b7bb3f.nii.gz

NYU_2/sub-0025185/ses-1/mri/m0wp3sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F6/32/MD5E-s2248086--9065995020a44c280a300f9f11918d4b.nii.gz/MD5E-s2248086--9065995020a44c280a300f9f11918d4b.nii.gz

NYU_2/sub-0025185/ses-1/mri/mori_sub-0025185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025185/ses-1/mri/mori_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xp/9W/MD5E-s155781--14d868db5990045fb697acb4e84e9db0.nii.gz/MD5E-s155781--14d868db5990045fb697acb4e84e9db0.nii.gz

NYU_2/sub-0025185/ses-1/mri/mwp1sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pv/07/MD5E-s2622911--37f4f5592d647d9e946d7c26cc2bc100.nii.gz/MD5E-s2622911--37f4f5592d647d9e946d7c26cc2bc100.nii.gz

NYU_2/sub-0025185/ses-1/mri/mwp2sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zX/zf/MD5E-s2264194--d3f0f021d4ef3f7e21fda9328a1abcea.nii.gz/MD5E-s2264194--d3f0f021d4ef3f7e21fda9328a1abcea.nii.gz

NYU_2/sub-0025185/ses-1/mri/mwp3sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025185/ses-1/mri/neuromorphometrics_sub-0025185_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025185/ses-1/mri/neuromorphometrics_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025185/ses-1/mri/p0sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0g/86/MD5E-s700159--3d0cce447662a0eb5dc112b98bc33934.nii.gz/MD5E-s700159--3d0cce447662a0eb5dc112b98bc33934.nii.gz

NYU_2/sub-0025185/ses-1/mri/p1sub-0025185_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025185/ses-1/mri/p2sub-0025185_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025185/ses-1/mri/p3sub-0025185_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025185/ses-1/mri/rp1sub-0025185_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025185/ses-1/mri/rp2sub-0025185_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025185/ses-1/mri/rp3sub-0025185_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025185/ses-1/mri/t_sub-0025185_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025185/ses-1/mri/t_sub-0025185_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/22/8v/MD5E-s283--b6d8fdbe177985e212a0184c3d6a536c.mat/MD5E-s283--b6d8fdbe177985e212a0184c3d6a536c.mat

NYU_2/sub-0025185/ses-1/mri/thalamus_sub-0025185_ses-1_run-1_T1w.csv

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NYU_2/sub-0025185/ses-1/mri/thalamus_sub-0025185_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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