[DATALAD RUNCMD] Compute BMB_1/sub-0003011/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BMB_1/sub-0003011/ses-1/anat/sub-0003011_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BMB_1/sub-0003011/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BMB_1/sub-0003011/ses-1/label/catROI_sub-0003011_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wG/zx/MD5E-s57603--800023dd3def771676d826495f3f4117.mat/MD5E-s57603--800023dd3def771676d826495f3f4117.mat

BMB_1/sub-0003011/ses-1/label/catROI_sub-0003011_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/69/7w/MD5E-s189181--5eaa93ded06a9886dfb972b87c6d9477.xml/MD5E-s189181--5eaa93ded06a9886dfb972b87c6d9477.xml

BMB_1/sub-0003011/ses-1/label/catROIs_sub-0003011_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8K/74/MD5E-s120146--3fae3941408a2a38cf0852bdf608c452.mat/MD5E-s120146--3fae3941408a2a38cf0852bdf608c452.mat

BMB_1/sub-0003011/ses-1/label/catROIs_sub-0003011_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gP/W2/MD5E-s332178--b145056fe321ae0162ef3e8816595351.xml/MD5E-s332178--b145056fe321ae0162ef3e8816595351.xml

BMB_1/sub-0003011/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003011_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BMB_1/sub-0003011/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mM/qw/MD5E-s149773--437bb56afcf3c3f94bc8b2a43b6f8b9b.nii.gz/MD5E-s149773--437bb56afcf3c3f94bc8b2a43b6f8b9b.nii.gz

BMB_1/sub-0003011/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003011_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BMB_1/sub-0003011/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zf/KV/MD5E-s168393--77f297cedb42ceb78e82d782ab74bb2a.nii.gz/MD5E-s168393--77f297cedb42ceb78e82d782ab74bb2a.nii.gz

BMB_1/sub-0003011/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003011_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BMB_1/sub-0003011/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3P/qV/MD5E-s230161--4149137e8d9429c57c2a191304562f9b.nii.gz/MD5E-s230161--4149137e8d9429c57c2a191304562f9b.nii.gz

BMB_1/sub-0003011/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003011_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BMB_1/sub-0003011/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pw/Jp/MD5E-s255285--3f6974ed2b807edc9d4b60ea176e6795.nii.gz/MD5E-s255285--3f6974ed2b807edc9d4b60ea176e6795.nii.gz

BMB_1/sub-0003011/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003011_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BMB_1/sub-0003011/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xG/8P/MD5E-s24080--43818211ef9017dedaa49cf98ce6686e.nii.gz/MD5E-s24080--43818211ef9017dedaa49cf98ce6686e.nii.gz

BMB_1/sub-0003011/ses-1/mri/aal3_sub-0003011_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BMB_1/sub-0003011/ses-1/mri/aal3_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1q/JV/MD5E-s171570--276a3182e8a7b27230785d0b357e0dd2.nii.gz/MD5E-s171570--276a3182e8a7b27230785d0b357e0dd2.nii.gz

BMB_1/sub-0003011/ses-1/mri/anatomy3_sub-0003011_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BMB_1/sub-0003011/ses-1/mri/anatomy3_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X5/K1/MD5E-s123483--9ead6a0c04e265220983b7011ab237bb.nii.gz/MD5E-s123483--9ead6a0c04e265220983b7011ab237bb.nii.gz

BMB_1/sub-0003011/ses-1/mri/anon_misub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/m1/MD5E-s5168679--f1bc1710c0c74a554b3b23852735fa8f.nii.gz/MD5E-s5168679--f1bc1710c0c74a554b3b23852735fa8f.nii.gz

BMB_1/sub-0003011/ses-1/mri/anon_msub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GX/4f/MD5E-s12246044--251a41ad926b37585411772942a8cc55.nii.gz/MD5E-s12246044--251a41ad926b37585411772942a8cc55.nii.gz

BMB_1/sub-0003011/ses-1/mri/cat_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1p/KM/MD5E-s91210--62761db7ba4206144100e5d0b92e075d.nii.gz/MD5E-s91210--62761db7ba4206144100e5d0b92e075d.nii.gz

BMB_1/sub-0003011/ses-1/mri/cobra_sub-0003011_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BMB_1/sub-0003011/ses-1/mri/cobra_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9P/m4/MD5E-s44475--4448a790bab93bd75a06d814e0efdcf4.nii.gz/MD5E-s44475--4448a790bab93bd75a06d814e0efdcf4.nii.gz

BMB_1/sub-0003011/ses-1/mri/hammers_sub-0003011_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BMB_1/sub-0003011/ses-1/mri/hammers_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7m/Pf/MD5E-s134647--cbac98a54c0632206093c5b8b1f2cc60.nii.gz/MD5E-s134647--cbac98a54c0632206093c5b8b1f2cc60.nii.gz

BMB_1/sub-0003011/ses-1/mri/ibsr_sub-0003011_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BMB_1/sub-0003011/ses-1/mri/ibsr_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0f/QG/MD5E-s141134--a2f348d945b86a8bb1c199b4dabe8cc8.nii.gz/MD5E-s141134--a2f348d945b86a8bb1c199b4dabe8cc8.nii.gz

BMB_1/sub-0003011/ses-1/mri/it_sub-0003011_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/07/VQ/MD5E-s283--85255498d2d99dbb7f5fa7a00068c872.mat/MD5E-s283--85255498d2d99dbb7f5fa7a00068c872.mat

BMB_1/sub-0003011/ses-1/mri/it_sub-0003011_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wj/8p/MD5E-s284--7d35fe57c3875362e3688593e0832a77.mat/MD5E-s284--7d35fe57c3875362e3688593e0832a77.mat

BMB_1/sub-0003011/ses-1/mri/iy_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5f/2k/MD5E-s40864648--6c5a18143a96f5ad3bfb24b54965b7ca.nii.gz/MD5E-s40864648--6c5a18143a96f5ad3bfb24b54965b7ca.nii.gz

BMB_1/sub-0003011/ses-1/mri/julichbrain_sub-0003011_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BMB_1/sub-0003011/ses-1/mri/julichbrain_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k3/9F/MD5E-s178464--d46b6625ae36114cd95d167aaa453870.nii.gz/MD5E-s178464--d46b6625ae36114cd95d167aaa453870.nii.gz

BMB_1/sub-0003011/ses-1/mri/lpba40_sub-0003011_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BMB_1/sub-0003011/ses-1/mri/lpba40_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/Qg/MD5E-s130871--2234b66709118fba2f0434a0205e6952.nii.gz/MD5E-s130871--2234b66709118fba2f0434a0205e6952.nii.gz

BMB_1/sub-0003011/ses-1/mri/m0wp1sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fF/Jf/MD5E-s2591356--f4019c9c4d20eadc65d340824449968f.nii.gz/MD5E-s2591356--f4019c9c4d20eadc65d340824449968f.nii.gz

BMB_1/sub-0003011/ses-1/mri/m0wp2sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MW/GW/MD5E-s2293188--d735c3eaa1bdaffda3b26abbbd2b2df8.nii.gz/MD5E-s2293188--d735c3eaa1bdaffda3b26abbbd2b2df8.nii.gz

BMB_1/sub-0003011/ses-1/mri/m0wp3sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J0/9V/MD5E-s2594893--03313712a65d89c06166f9e8f5250d54.nii.gz/MD5E-s2594893--03313712a65d89c06166f9e8f5250d54.nii.gz

BMB_1/sub-0003011/ses-1/mri/mori_sub-0003011_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BMB_1/sub-0003011/ses-1/mri/mori_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gz/2K/MD5E-s157085--b0d72a2c058d2481c068b46be438645c.nii.gz/MD5E-s157085--b0d72a2c058d2481c068b46be438645c.nii.gz

BMB_1/sub-0003011/ses-1/mri/mwp1sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5W/Fx/MD5E-s2600690--34229417cd59735350aaed02121abc75.nii.gz/MD5E-s2600690--34229417cd59735350aaed02121abc75.nii.gz

BMB_1/sub-0003011/ses-1/mri/mwp2sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q2/FF/MD5E-s2300695--e603788b05337933f3bb4cff21280b12.nii.gz/MD5E-s2300695--e603788b05337933f3bb4cff21280b12.nii.gz

BMB_1/sub-0003011/ses-1/mri/mwp3sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1j/9V/MD5E-s2591223--077621f95d6db3c2d9cd1afb43c0263c.nii.gz/MD5E-s2591223--077621f95d6db3c2d9cd1afb43c0263c.nii.gz

BMB_1/sub-0003011/ses-1/mri/neuromorphometrics_sub-0003011_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BMB_1/sub-0003011/ses-1/mri/neuromorphometrics_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kz/ZP/MD5E-s181006--ae9beab61458d0d8f88a430118def605.nii.gz/MD5E-s181006--ae9beab61458d0d8f88a430118def605.nii.gz

BMB_1/sub-0003011/ses-1/mri/p0sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wW/zx/MD5E-s570062--2f46b7d26c5f6bb69075df0d1974289f.nii.gz/MD5E-s570062--2f46b7d26c5f6bb69075df0d1974289f.nii.gz

BMB_1/sub-0003011/ses-1/mri/p1sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/99/5X/MD5E-s601914--c1043a648b727f0cf5e447c6783b0a51.nii.gz/MD5E-s601914--c1043a648b727f0cf5e447c6783b0a51.nii.gz

BMB_1/sub-0003011/ses-1/mri/p2sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9V/JX/MD5E-s378655--87025dd5cb5184ce2b380dd7c6a74994.nii.gz/MD5E-s378655--87025dd5cb5184ce2b380dd7c6a74994.nii.gz

BMB_1/sub-0003011/ses-1/mri/p3sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/jZ/MD5E-s366240--be7dcc564f4c2eab7b34ed829f4c72d7.nii.gz/MD5E-s366240--be7dcc564f4c2eab7b34ed829f4c72d7.nii.gz

BMB_1/sub-0003011/ses-1/mri/rp1sub-0003011_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/qW/MD5E-s463710--0a6c65899d08642cb154aee075ca33a4.nii.gz/MD5E-s463710--0a6c65899d08642cb154aee075ca33a4.nii.gz

BMB_1/sub-0003011/ses-1/mri/rp2sub-0003011_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gF/5X/MD5E-s303132--925f52ea5424935f05508041dc5869d5.nii.gz/MD5E-s303132--925f52ea5424935f05508041dc5869d5.nii.gz

BMB_1/sub-0003011/ses-1/mri/rp3sub-0003011_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mp/F7/MD5E-s315558--4030f083dbb8076c5685763b2114b93f.nii.gz/MD5E-s315558--4030f083dbb8076c5685763b2114b93f.nii.gz

BMB_1/sub-0003011/ses-1/mri/t_sub-0003011_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XM/Vf/MD5E-s284--70b4aa6606580ab71113ac1d53099836.mat/MD5E-s284--70b4aa6606580ab71113ac1d53099836.mat

BMB_1/sub-0003011/ses-1/mri/t_sub-0003011_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xk/f3/MD5E-s285--e052531ff3aa31379bcd3b84708a338d.mat/MD5E-s285--e052531ff3aa31379bcd3b84708a338d.mat

BMB_1/sub-0003011/ses-1/mri/thalamus_sub-0003011_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BMB_1/sub-0003011/ses-1/mri/thalamus_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6V/1J/MD5E-s15851--5c4e746def5eced70c1872f84cf83cb7.nii.gz/MD5E-s15851--5c4e746def5eced70c1872f84cf83cb7.nii.gz

BMB_1/sub-0003011/ses-1/mri/wj_sub-0003011_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2K/79/MD5E-s5559143--4859f6282f1b1b7d4fe868324be17cb1.nii.gz/MD5E-s5559143--4859f6282f1b1b7d4fe868324be17cb1.nii.gz

BMB_1/sub-0003011/ses-1/mri/wmisub-0003011_ses-1_run-1_T1w.nii.gz

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