[DATALAD RUNCMD] Compute SWU_4/sub-0025681/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025681/ses-2/anat/sub-0025681_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025681/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025681/ses-2/label/catROI_sub-0025681_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q6/X8/MD5E-s57632--23b0e0bad5aad12818ea695764820de6.mat/MD5E-s57632--23b0e0bad5aad12818ea695764820de6.mat

SWU_4/sub-0025681/ses-2/label/catROI_sub-0025681_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/M4/MD5E-s188949--f64b25e3ed26e7d034f4cc98b0641513.xml/MD5E-s188949--f64b25e3ed26e7d034f4cc98b0641513.xml

SWU_4/sub-0025681/ses-2/label/catROIs_sub-0025681_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vf/Qk/MD5E-s120052--bcee0435c8df817eff4815fb24a90084.mat/MD5E-s120052--bcee0435c8df817eff4815fb24a90084.mat

SWU_4/sub-0025681/ses-2/label/catROIs_sub-0025681_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qV/5q/MD5E-s332196--4cb2d8cb690c9b2e48c85a9af1664a64.xml/MD5E-s332196--4cb2d8cb690c9b2e48c85a9af1664a64.xml

SWU_4/sub-0025681/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025681_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025681/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XQ/w3/MD5E-s148817--3640ce75b0ca8cd593efa78e2e6bece5.nii.gz/MD5E-s148817--3640ce75b0ca8cd593efa78e2e6bece5.nii.gz

SWU_4/sub-0025681/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025681_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025681/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9z/pG/MD5E-s168052--e2566935e22f62e3c747980e298dd759.nii.gz/MD5E-s168052--e2566935e22f62e3c747980e298dd759.nii.gz

SWU_4/sub-0025681/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025681_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025681/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P0/1Z/MD5E-s224972--ea30f7550414bbbd72bc081ea8de97a2.nii.gz/MD5E-s224972--ea30f7550414bbbd72bc081ea8de97a2.nii.gz

SWU_4/sub-0025681/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025681_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025681/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xq/J3/MD5E-s251640--196ffee8769defac02f6adcf40fdd784.nii.gz/MD5E-s251640--196ffee8769defac02f6adcf40fdd784.nii.gz

SWU_4/sub-0025681/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025681_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025681/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FJ/KP/MD5E-s23164--c5ea61ebfe9a7eb6f2813e135583da51.nii.gz/MD5E-s23164--c5ea61ebfe9a7eb6f2813e135583da51.nii.gz

SWU_4/sub-0025681/ses-2/mri/aal3_sub-0025681_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025681/ses-2/mri/aal3_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K6/vW/MD5E-s170225--98a8349ed172ff2b4a25f763dfcc3606.nii.gz/MD5E-s170225--98a8349ed172ff2b4a25f763dfcc3606.nii.gz

SWU_4/sub-0025681/ses-2/mri/anatomy3_sub-0025681_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025681/ses-2/mri/anatomy3_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/q0/MD5E-s123534--ca2c6cbb21e0669478ff41a0d1f4be94.nii.gz/MD5E-s123534--ca2c6cbb21e0669478ff41a0d1f4be94.nii.gz

SWU_4/sub-0025681/ses-2/mri/anon_misub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zv/wk/MD5E-s8516855--8edb591634a61ae87b198ac81f88e852.nii.gz/MD5E-s8516855--8edb591634a61ae87b198ac81f88e852.nii.gz

SWU_4/sub-0025681/ses-2/mri/anon_msub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fk/62/MD5E-s8710268--0db1be9b2fc93108c2dfb2fbe2a87656.nii.gz/MD5E-s8710268--0db1be9b2fc93108c2dfb2fbe2a87656.nii.gz

SWU_4/sub-0025681/ses-2/mri/cat_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z2/8P/MD5E-s90398--080bb8ccbba186610e16fa53378bf243.nii.gz/MD5E-s90398--080bb8ccbba186610e16fa53378bf243.nii.gz

SWU_4/sub-0025681/ses-2/mri/cobra_sub-0025681_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025681/ses-2/mri/cobra_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2V/K4/MD5E-s45120--cb7e1b40b3910b6ccbc22ca1f3b3f87f.nii.gz/MD5E-s45120--cb7e1b40b3910b6ccbc22ca1f3b3f87f.nii.gz

SWU_4/sub-0025681/ses-2/mri/hammers_sub-0025681_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025681/ses-2/mri/hammers_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kq/28/MD5E-s133437--42f687f10f8cbfd861734dc5372a1cd4.nii.gz/MD5E-s133437--42f687f10f8cbfd861734dc5372a1cd4.nii.gz

SWU_4/sub-0025681/ses-2/mri/ibsr_sub-0025681_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025681/ses-2/mri/ibsr_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Q/VJ/MD5E-s141573--34df15676a310c0d1c948bbcf4ad5a23.nii.gz/MD5E-s141573--34df15676a310c0d1c948bbcf4ad5a23.nii.gz

SWU_4/sub-0025681/ses-2/mri/it_sub-0025681_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0K/Fw/MD5E-s283--123c30aadc2fc3d2ee15dfa6db4c8ac0.mat/MD5E-s283--123c30aadc2fc3d2ee15dfa6db4c8ac0.mat

SWU_4/sub-0025681/ses-2/mri/it_sub-0025681_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K8/P5/MD5E-s281--ddef98f0504e9508dd4269e038c5a2e0.mat/MD5E-s281--ddef98f0504e9508dd4269e038c5a2e0.mat

SWU_4/sub-0025681/ses-2/mri/iy_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gx/61/MD5E-s39673075--8adecc28cd8e3e3c2defdbb5d3ab667b.nii.gz/MD5E-s39673075--8adecc28cd8e3e3c2defdbb5d3ab667b.nii.gz

SWU_4/sub-0025681/ses-2/mri/julichbrain_sub-0025681_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025681/ses-2/mri/julichbrain_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2M/18/MD5E-s178468--784c3febc33c47c5ea3f29fa9156dd65.nii.gz/MD5E-s178468--784c3febc33c47c5ea3f29fa9156dd65.nii.gz

SWU_4/sub-0025681/ses-2/mri/lpba40_sub-0025681_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025681/ses-2/mri/lpba40_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qx/5v/MD5E-s131906--d929f7ccc200e0245bed667aa9b70c15.nii.gz/MD5E-s131906--d929f7ccc200e0245bed667aa9b70c15.nii.gz

SWU_4/sub-0025681/ses-2/mri/m0wp1sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/0g/MD5E-s2574504--17f8f6b6b795ccb50caf22155be92539.nii.gz/MD5E-s2574504--17f8f6b6b795ccb50caf22155be92539.nii.gz

SWU_4/sub-0025681/ses-2/mri/m0wp2sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0W/77/MD5E-s2295439--526767be013b32d2919f6952eaaa936e.nii.gz/MD5E-s2295439--526767be013b32d2919f6952eaaa936e.nii.gz

SWU_4/sub-0025681/ses-2/mri/m0wp3sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7W/zg/MD5E-s2514326--4ae730db72dd2b885c43444f714a42ec.nii.gz/MD5E-s2514326--4ae730db72dd2b885c43444f714a42ec.nii.gz

SWU_4/sub-0025681/ses-2/mri/mori_sub-0025681_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025681/ses-2/mri/mori_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xx/vz/MD5E-s155473--6c305c3d4d2b7aa512a6ec78dff78349.nii.gz/MD5E-s155473--6c305c3d4d2b7aa512a6ec78dff78349.nii.gz

SWU_4/sub-0025681/ses-2/mri/mwp1sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vv/Kz/MD5E-s2585286--c256ed4bdd041ceb4fdc118e8984b964.nii.gz/MD5E-s2585286--c256ed4bdd041ceb4fdc118e8984b964.nii.gz

SWU_4/sub-0025681/ses-2/mri/mwp2sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G9/GV/MD5E-s2299600--7a7bd573e8b2f0365c12095449a2b661.nii.gz/MD5E-s2299600--7a7bd573e8b2f0365c12095449a2b661.nii.gz

SWU_4/sub-0025681/ses-2/mri/mwp3sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0q/8v/MD5E-s2510590--8c812011d0a37f16e54fab42c48bb2e2.nii.gz/MD5E-s2510590--8c812011d0a37f16e54fab42c48bb2e2.nii.gz

SWU_4/sub-0025681/ses-2/mri/neuromorphometrics_sub-0025681_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025681/ses-2/mri/neuromorphometrics_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025681/ses-2/mri/p0sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wp/fw/MD5E-s561813--c2fde9977925c5fde46e5061a735bd72.nii.gz/MD5E-s561813--c2fde9977925c5fde46e5061a735bd72.nii.gz

SWU_4/sub-0025681/ses-2/mri/p1sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025681/ses-2/mri/p2sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gg/WJ/MD5E-s388693--113745af472bbc7744195aa55a11d445.nii.gz/MD5E-s388693--113745af472bbc7744195aa55a11d445.nii.gz

SWU_4/sub-0025681/ses-2/mri/p3sub-0025681_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025681/ses-2/mri/rp1sub-0025681_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025681/ses-2/mri/rp2sub-0025681_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025681/ses-2/mri/rp3sub-0025681_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025681/ses-2/mri/t_sub-0025681_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025681/ses-2/mri/t_sub-0025681_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/km/v9/MD5E-s282--2407f3edd7552a3456b0df4923cb2f26.mat/MD5E-s282--2407f3edd7552a3456b0df4923cb2f26.mat

SWU_4/sub-0025681/ses-2/mri/thalamus_sub-0025681_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025681/ses-2/mri/thalamus_sub-0025681_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/pW/MD5E-s15822--804a7fdfce2f40ca9ccfffa6cedf4904.nii.gz/MD5E-s15822--804a7fdfce2f40ca9ccfffa6cedf4904.nii.gz

SWU_4/sub-0025681/ses-2/mri/wj_sub-0025681_ses-2_run-1_T1w.nii.gz

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