[DATALAD RUNCMD] Compute NYU_2/sub-0025000/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025000/ses-1/anat/sub-0025000_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025000/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025000/ses-1/label/catROI_sub-0025000_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gz/ff/MD5E-s57653--e11df55d2735818a0acc02c54d68d7b4.mat/MD5E-s57653--e11df55d2735818a0acc02c54d68d7b4.mat

NYU_2/sub-0025000/ses-1/label/catROI_sub-0025000_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9q/Z3/MD5E-s188886--d096182dedb03b99afacd4dd0f26c07e.xml/MD5E-s188886--d096182dedb03b99afacd4dd0f26c07e.xml

NYU_2/sub-0025000/ses-1/label/catROI_sub-0025000_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fj/Fk/MD5E-s57673--70c89a674689a6f480b85cc61cb40353.mat/MD5E-s57673--70c89a674689a6f480b85cc61cb40353.mat

NYU_2/sub-0025000/ses-1/label/catROI_sub-0025000_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Kk/Wx/MD5E-s188857--af0fd27c3aaa8b7e48d4351cce2c2f5e.xml/MD5E-s188857--af0fd27c3aaa8b7e48d4351cce2c2f5e.xml

NYU_2/sub-0025000/ses-1/label/catROIs_sub-0025000_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PK/79/MD5E-s120200--9ab3dda7d8ab3ea3e4ddc0220b0dd699.mat/MD5E-s120200--9ab3dda7d8ab3ea3e4ddc0220b0dd699.mat

NYU_2/sub-0025000/ses-1/label/catROIs_sub-0025000_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zJ/97/MD5E-s332103--89db2cf2d9e4571cc1ecfbb31224d598.xml/MD5E-s332103--89db2cf2d9e4571cc1ecfbb31224d598.xml

NYU_2/sub-0025000/ses-1/label/catROIs_sub-0025000_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/XW/KF/MD5E-s120262--9636cb7e9a008a47b1dadaa5d0cba703.mat/MD5E-s120262--9636cb7e9a008a47b1dadaa5d0cba703.mat

NYU_2/sub-0025000/ses-1/label/catROIs_sub-0025000_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Wv/5X/MD5E-s332141--e6dbf1f5a12fb8e50602ff0758ed6a34.xml/MD5E-s332141--e6dbf1f5a12fb8e50602ff0758ed6a34.xml

NYU_2/sub-0025000/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/kj/MD5E-s135225--21b7a29d735d02a029720eac5853c515.nii.gz/MD5E-s135225--21b7a29d735d02a029720eac5853c515.nii.gz

NYU_2/sub-0025000/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vW/Fg/MD5E-s135523--bd5d6a9f67165b734e4a8bc516ebb256.nii.gz/MD5E-s135523--bd5d6a9f67165b734e4a8bc516ebb256.nii.gz

NYU_2/sub-0025000/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wv/9X/MD5E-s152010--c213ec3646538cfd97538db2d24e3bcb.nii.gz/MD5E-s152010--c213ec3646538cfd97538db2d24e3bcb.nii.gz

NYU_2/sub-0025000/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5j/K3/MD5E-s152233--971d1ae9546f5a56dc314ca58f53042f.nii.gz/MD5E-s152233--971d1ae9546f5a56dc314ca58f53042f.nii.gz

NYU_2/sub-0025000/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/43/XF/MD5E-s203273--bcc34c601d4ed21b430d2c4f7b1302dc.nii.gz/MD5E-s203273--bcc34c601d4ed21b430d2c4f7b1302dc.nii.gz

NYU_2/sub-0025000/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3F/x1/MD5E-s203918--013866be7270497238b401832cce8d9e.nii.gz/MD5E-s203918--013866be7270497238b401832cce8d9e.nii.gz

NYU_2/sub-0025000/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Z/5m/MD5E-s227007--f20537120717f9a31ebebcfc33ccc24d.nii.gz/MD5E-s227007--f20537120717f9a31ebebcfc33ccc24d.nii.gz

NYU_2/sub-0025000/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xv/jj/MD5E-s227235--a139f1e5818cbe7d55bfb1bc8a10ad38.nii.gz/MD5E-s227235--a139f1e5818cbe7d55bfb1bc8a10ad38.nii.gz

NYU_2/sub-0025000/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7M/Fq/MD5E-s18553--6e97d97d6cee85ed65732cc0ef0af789.nii.gz/MD5E-s18553--6e97d97d6cee85ed65732cc0ef0af789.nii.gz

NYU_2/sub-0025000/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/pg/fQ/MD5E-s18444--f20554c5a3141d6a718244ef68950553.nii.gz/MD5E-s18444--f20554c5a3141d6a718244ef68950553.nii.gz

NYU_2/sub-0025000/ses-1/mri/aal3_sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x3/F5/MD5E-s153918--7f69c31e5afc835d2332bbd2a4f033dd.nii.gz/MD5E-s153918--7f69c31e5afc835d2332bbd2a4f033dd.nii.gz

NYU_2/sub-0025000/ses-1/mri/aal3_sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zv/JK/MD5E-s154425--1389f1578c8a2ebcf25a5a5fd1b4ceac.nii.gz/MD5E-s154425--1389f1578c8a2ebcf25a5a5fd1b4ceac.nii.gz

NYU_2/sub-0025000/ses-1/mri/anatomy3_sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2m/ZP/MD5E-s108758--c92e314649891d756177bcc48927c247.nii.gz/MD5E-s108758--c92e314649891d756177bcc48927c247.nii.gz

NYU_2/sub-0025000/ses-1/mri/anatomy3_sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/V6/K3/MD5E-s109016--d622421c5d2aa5c7b39eaa0a66ff314a.nii.gz/MD5E-s109016--d622421c5d2aa5c7b39eaa0a66ff314a.nii.gz

NYU_2/sub-0025000/ses-1/mri/anon_misub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4m/J9/MD5E-s3556394--539282f0e917e9d53d32537caf90ed28.nii.gz/MD5E-s3556394--539282f0e917e9d53d32537caf90ed28.nii.gz

NYU_2/sub-0025000/ses-1/mri/anon_misub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4q/75/MD5E-s3590296--45e89f808b3001403297995990a52aed.nii.gz/MD5E-s3590296--45e89f808b3001403297995990a52aed.nii.gz

NYU_2/sub-0025000/ses-1/mri/anon_msub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gQ/XG/MD5E-s7134464--83339c114d050a6c7399c4e85218b7dd.nii.gz/MD5E-s7134464--83339c114d050a6c7399c4e85218b7dd.nii.gz

NYU_2/sub-0025000/ses-1/mri/anon_msub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kW/37/MD5E-s9229892--24b75e9957f783d78aacf395d0dc422f.nii.gz/MD5E-s9229892--24b75e9957f783d78aacf395d0dc422f.nii.gz

NYU_2/sub-0025000/ses-1/mri/cat_sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7J/wz/MD5E-s80774--4c412f6c5d5e1933484afcccccd4512b.nii.gz/MD5E-s80774--4c412f6c5d5e1933484afcccccd4512b.nii.gz

NYU_2/sub-0025000/ses-1/mri/cat_sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/f4/WX/MD5E-s81161--1fbbeab6033f3f767f2759a1b3d095bd.nii.gz/MD5E-s81161--1fbbeab6033f3f767f2759a1b3d095bd.nii.gz

NYU_2/sub-0025000/ses-1/mri/cobra_sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mK/Qw/MD5E-s37928--39625a2e16f2f2c44e07b31f4d063cda.nii.gz/MD5E-s37928--39625a2e16f2f2c44e07b31f4d063cda.nii.gz

NYU_2/sub-0025000/ses-1/mri/cobra_sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0G/vw/MD5E-s38289--bce2960e75111e69e0b1053c7235f0ff.nii.gz/MD5E-s38289--bce2960e75111e69e0b1053c7235f0ff.nii.gz

NYU_2/sub-0025000/ses-1/mri/hammers_sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/87/GP/MD5E-s118461--dc68a7edb4bb3e9f43721cf52fd5ace1.nii.gz/MD5E-s118461--dc68a7edb4bb3e9f43721cf52fd5ace1.nii.gz

NYU_2/sub-0025000/ses-1/mri/hammers_sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/g3/mM/MD5E-s118577--b00f60e009ee5c7277c5b8b9df72783b.nii.gz/MD5E-s118577--b00f60e009ee5c7277c5b8b9df72783b.nii.gz

NYU_2/sub-0025000/ses-1/mri/ibsr_sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fX/f4/MD5E-s125273--713ede7557c7f6ca5222f69f2b6734b4.nii.gz/MD5E-s125273--713ede7557c7f6ca5222f69f2b6734b4.nii.gz

NYU_2/sub-0025000/ses-1/mri/ibsr_sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qF/mw/MD5E-s125911--c160a35c852f46d2e6682b2b0adc2458.nii.gz/MD5E-s125911--c160a35c852f46d2e6682b2b0adc2458.nii.gz

NYU_2/sub-0025000/ses-1/mri/it_sub-0025000_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w3/1g/MD5E-s284--28b47baafa78dd53c34eaf560e668f77.mat/MD5E-s284--28b47baafa78dd53c34eaf560e668f77.mat

NYU_2/sub-0025000/ses-1/mri/it_sub-0025000_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/g9/MD5E-s284--cfc8e59ff3b7b1ec4c8119773fd4a027.mat/MD5E-s284--cfc8e59ff3b7b1ec4c8119773fd4a027.mat

NYU_2/sub-0025000/ses-1/mri/it_sub-0025000_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3m/Mz/MD5E-s283--b196ae39c35d5ffb6c2ba15fc4720763.mat/MD5E-s283--b196ae39c35d5ffb6c2ba15fc4720763.mat

NYU_2/sub-0025000/ses-1/mri/it_sub-0025000_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/mG/M1/MD5E-s284--2291e1fd557967b3e76c38441e79f5d6.mat/MD5E-s284--2291e1fd557967b3e76c38441e79f5d6.mat

NYU_2/sub-0025000/ses-1/mri/iy_sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5k/ZX/MD5E-s31039856--451ce7843306e046d64163c4d2fbfd97.nii.gz/MD5E-s31039856--451ce7843306e046d64163c4d2fbfd97.nii.gz

NYU_2/sub-0025000/ses-1/mri/iy_sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/v0/qj/MD5E-s31232232--a804dd7850ee9f135044b26665a131e9.nii.gz/MD5E-s31232232--a804dd7850ee9f135044b26665a131e9.nii.gz

NYU_2/sub-0025000/ses-1/mri/julichbrain_sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V6/13/MD5E-s159788--39c937b52afd5ec3bb0324bbebc41566.nii.gz/MD5E-s159788--39c937b52afd5ec3bb0324bbebc41566.nii.gz

NYU_2/sub-0025000/ses-1/mri/julichbrain_sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/g1/v4/MD5E-s160289--4c968e261ca375a6761fb405789ef2c0.nii.gz/MD5E-s160289--4c968e261ca375a6761fb405789ef2c0.nii.gz

NYU_2/sub-0025000/ses-1/mri/lpba40_sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/45/XG/MD5E-s115982--2e5e0c99782f8060061ef5381487fbe8.nii.gz/MD5E-s115982--2e5e0c99782f8060061ef5381487fbe8.nii.gz

NYU_2/sub-0025000/ses-1/mri/lpba40_sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Jp/j6/MD5E-s116479--5cfb9bcd55b6c6ffa229c2fdee4d4a78.nii.gz/MD5E-s116479--5cfb9bcd55b6c6ffa229c2fdee4d4a78.nii.gz

NYU_2/sub-0025000/ses-1/mri/m0wp1sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V1/j3/MD5E-s2589816--0810d424198b3fd40715441f40b47116.nii.gz/MD5E-s2589816--0810d424198b3fd40715441f40b47116.nii.gz

NYU_2/sub-0025000/ses-1/mri/m0wp1sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/G5/kQ/MD5E-s2590095--37592efd0df736190707df70482a2549.nii.gz/MD5E-s2590095--37592efd0df736190707df70482a2549.nii.gz

NYU_2/sub-0025000/ses-1/mri/m0wp2sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k2/Jk/MD5E-s2243198--fb42017fef507b50ade6fc07e39b025d.nii.gz/MD5E-s2243198--fb42017fef507b50ade6fc07e39b025d.nii.gz

NYU_2/sub-0025000/ses-1/mri/m0wp2sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qG/0k/MD5E-s2240265--ff1f46e41fb995b2fc75e41a716d7cd8.nii.gz/MD5E-s2240265--ff1f46e41fb995b2fc75e41a716d7cd8.nii.gz

NYU_2/sub-0025000/ses-1/mri/m0wp3sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025000/ses-1/mri/m0wp3sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025000/ses-1/mri/mori_sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025000/ses-1/mri/mori_sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Gf/JW/MD5E-s140299--39a2f761d35b15567c68d08f9ac8dd86.nii.gz/MD5E-s140299--39a2f761d35b15567c68d08f9ac8dd86.nii.gz

NYU_2/sub-0025000/ses-1/mri/mwp1sub-0025000_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1w/mj/MD5E-s2596544--36f71e23e026e5f775f574bbe11afee4.nii.gz/MD5E-s2596544--36f71e23e026e5f775f574bbe11afee4.nii.gz

NYU_2/sub-0025000/ses-1/mri/mwp1sub-0025000_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Wk/zV/MD5E-s2596937--27094af279fa2c211819c3eee96ce6e6.nii.gz/MD5E-s2596937--27094af279fa2c211819c3eee96ce6e6.nii.gz

NYU_2/sub-0025000/ses-1/mri/mwp2sub-0025000_ses-1_run-1_T1w.nii.gz

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