[DATALAD RUNCMD] Compute NYU_2/sub-0025179/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025179/ses-1/anat/sub-0025179_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025179/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025179/ses-1/label/catROI_sub-0025179_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3x/7z/MD5E-s57904--1c12a205df7a23c2e07ea147e6226887.mat/MD5E-s57904--1c12a205df7a23c2e07ea147e6226887.mat

NYU_2/sub-0025179/ses-1/label/catROI_sub-0025179_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wJ/gw/MD5E-s188746--6f4a1396ecf8e58ec796d25dcb65ce30.xml/MD5E-s188746--6f4a1396ecf8e58ec796d25dcb65ce30.xml

NYU_2/sub-0025179/ses-1/label/catROIs_sub-0025179_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kX/X9/MD5E-s120324--d49cd4b76e06dd5b5f6bad524f778eb7.mat/MD5E-s120324--d49cd4b76e06dd5b5f6bad524f778eb7.mat

NYU_2/sub-0025179/ses-1/label/catROIs_sub-0025179_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g4/vP/MD5E-s332129--cbc09cf077ccc81e3fe08088595485e5.xml/MD5E-s332129--cbc09cf077ccc81e3fe08088595485e5.xml

NYU_2/sub-0025179/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025179_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025179/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G9/P3/MD5E-s149623--7f34b5d3601e97eb79b9bb155b9f5d99.nii.gz/MD5E-s149623--7f34b5d3601e97eb79b9bb155b9f5d99.nii.gz

NYU_2/sub-0025179/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025179_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025179/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9M/Fp/MD5E-s166892--25454ea90eec7b3247b271e0decbd488.nii.gz/MD5E-s166892--25454ea90eec7b3247b271e0decbd488.nii.gz

NYU_2/sub-0025179/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025179_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025179/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gz/zj/MD5E-s225134--c8f35bc9b4b01f0b3fda1a5f2a72d7da.nii.gz/MD5E-s225134--c8f35bc9b4b01f0b3fda1a5f2a72d7da.nii.gz

NYU_2/sub-0025179/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025179_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025179/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pq/Vq/MD5E-s249174--dffae67b684d1878ac923aaf95471160.nii.gz/MD5E-s249174--dffae67b684d1878ac923aaf95471160.nii.gz

NYU_2/sub-0025179/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025179_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025179/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PM/gK/MD5E-s19599--5980a85486c885eeb7304532cad84d56.nii.gz/MD5E-s19599--5980a85486c885eeb7304532cad84d56.nii.gz

NYU_2/sub-0025179/ses-1/mri/aal3_sub-0025179_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025179/ses-1/mri/aal3_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gg/5Z/MD5E-s167442--4533e3821e6d5bb3b3e5a9f44ee2eb3c.nii.gz/MD5E-s167442--4533e3821e6d5bb3b3e5a9f44ee2eb3c.nii.gz

NYU_2/sub-0025179/ses-1/mri/anatomy3_sub-0025179_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025179/ses-1/mri/anatomy3_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P2/k8/MD5E-s120324--7ebd4bc3d54144a455d36c675cbd0cc6.nii.gz/MD5E-s120324--7ebd4bc3d54144a455d36c675cbd0cc6.nii.gz

NYU_2/sub-0025179/ses-1/mri/anon_misub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/jq/MD5E-s3468828--ef662041a355908d8bc043a1344afa53.nii.gz/MD5E-s3468828--ef662041a355908d8bc043a1344afa53.nii.gz

NYU_2/sub-0025179/ses-1/mri/anon_msub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MF/M4/MD5E-s7171132--38ec9f9de02c829a6d603f0a5bdc16ee.nii.gz/MD5E-s7171132--38ec9f9de02c829a6d603f0a5bdc16ee.nii.gz

NYU_2/sub-0025179/ses-1/mri/cat_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3p/5v/MD5E-s88376--44bfd3229ca87df81fc8883acf916a76.nii.gz/MD5E-s88376--44bfd3229ca87df81fc8883acf916a76.nii.gz

NYU_2/sub-0025179/ses-1/mri/cobra_sub-0025179_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025179/ses-1/mri/cobra_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fQ/JJ/MD5E-s40422--094067075546e77bdde98d4c38f2e4a1.nii.gz/MD5E-s40422--094067075546e77bdde98d4c38f2e4a1.nii.gz

NYU_2/sub-0025179/ses-1/mri/hammers_sub-0025179_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025179/ses-1/mri/hammers_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9K/3P/MD5E-s128652--20e16664f50a269a65b60774bff60724.nii.gz/MD5E-s128652--20e16664f50a269a65b60774bff60724.nii.gz

NYU_2/sub-0025179/ses-1/mri/ibsr_sub-0025179_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025179/ses-1/mri/ibsr_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J8/Q6/MD5E-s136280--c47133dc1c7e87992d8821207e20ae60.nii.gz/MD5E-s136280--c47133dc1c7e87992d8821207e20ae60.nii.gz

NYU_2/sub-0025179/ses-1/mri/it_sub-0025179_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xw/Pm/MD5E-s283--899ecc510c7c81b44d4d29062917859f.mat/MD5E-s283--899ecc510c7c81b44d4d29062917859f.mat

NYU_2/sub-0025179/ses-1/mri/it_sub-0025179_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j5/11/MD5E-s285--5766f5fb5521912f751d3449c1799c60.mat/MD5E-s285--5766f5fb5521912f751d3449c1799c60.mat

NYU_2/sub-0025179/ses-1/mri/iy_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p0/xk/MD5E-s33412384--61b2918ab2bfe00dc97a2bc1bb785f55.nii.gz/MD5E-s33412384--61b2918ab2bfe00dc97a2bc1bb785f55.nii.gz

NYU_2/sub-0025179/ses-1/mri/julichbrain_sub-0025179_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025179/ses-1/mri/julichbrain_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1k/5v/MD5E-s177083--306ccf4ddcaa41c6417a7b36e56d0562.nii.gz/MD5E-s177083--306ccf4ddcaa41c6417a7b36e56d0562.nii.gz

NYU_2/sub-0025179/ses-1/mri/lpba40_sub-0025179_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025179/ses-1/mri/lpba40_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v2/m7/MD5E-s126642--71ee7244d0157479d69b7ed293cca06b.nii.gz/MD5E-s126642--71ee7244d0157479d69b7ed293cca06b.nii.gz

NYU_2/sub-0025179/ses-1/mri/m0wp1sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K3/Q8/MD5E-s2607216--da193c38448fa73ba1cfb46b95f7d252.nii.gz/MD5E-s2607216--da193c38448fa73ba1cfb46b95f7d252.nii.gz

NYU_2/sub-0025179/ses-1/mri/m0wp2sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KW/v4/MD5E-s2267383--dbd6b9376d07f8bb8b7f13c392ae895b.nii.gz/MD5E-s2267383--dbd6b9376d07f8bb8b7f13c392ae895b.nii.gz

NYU_2/sub-0025179/ses-1/mri/m0wp3sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zP/7Q/MD5E-s2282425--85c92cbe809ff76196102e0f6a7f8e77.nii.gz/MD5E-s2282425--85c92cbe809ff76196102e0f6a7f8e77.nii.gz

NYU_2/sub-0025179/ses-1/mri/mori_sub-0025179_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025179/ses-1/mri/mori_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x1/04/MD5E-s153806--e58d9b50af10075d0d2dd4bfbea98af2.nii.gz/MD5E-s153806--e58d9b50af10075d0d2dd4bfbea98af2.nii.gz

NYU_2/sub-0025179/ses-1/mri/mwp1sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5V/5w/MD5E-s2609124--a414c959ba454e490e48305a4eb1256b.nii.gz/MD5E-s2609124--a414c959ba454e490e48305a4eb1256b.nii.gz

NYU_2/sub-0025179/ses-1/mri/mwp2sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WM/2v/MD5E-s2266457--179147107e338311ff883c094c6c2e48.nii.gz/MD5E-s2266457--179147107e338311ff883c094c6c2e48.nii.gz

NYU_2/sub-0025179/ses-1/mri/mwp3sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/94/xV/MD5E-s2278809--8eb1b1b5ec6f5b77b37a4969dc03e730.nii.gz/MD5E-s2278809--8eb1b1b5ec6f5b77b37a4969dc03e730.nii.gz

NYU_2/sub-0025179/ses-1/mri/neuromorphometrics_sub-0025179_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025179/ses-1/mri/neuromorphometrics_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025179/ses-1/mri/p0sub-0025179_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/MW/Z0/MD5E-s705569--88c4c9b8827554de71306d1b288047cd.nii.gz/MD5E-s705569--88c4c9b8827554de71306d1b288047cd.nii.gz

NYU_2/sub-0025179/ses-1/mri/p1sub-0025179_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025179/ses-1/mri/p2sub-0025179_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025179/ses-1/mri/p3sub-0025179_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025179/ses-1/mri/rp1sub-0025179_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025179/ses-1/mri/rp2sub-0025179_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025179/ses-1/mri/rp3sub-0025179_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025179/ses-1/mri/t_sub-0025179_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025179/ses-1/mri/t_sub-0025179_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mv/35/MD5E-s285--103a0ec05588a1c206e63f7ccc472c42.mat/MD5E-s285--103a0ec05588a1c206e63f7ccc472c42.mat

NYU_2/sub-0025179/ses-1/mri/thalamus_sub-0025179_ses-1_run-1_T1w.csv

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NYU_2/sub-0025179/ses-1/mri/thalamus_sub-0025179_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025179/ses-1/mri/wj_sub-0025179_ses-1_run-1_T1w.nii.gz

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