[DATALAD RUNCMD] Compute BMB_1/sub-0003022/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BMB_1/sub-0003022/ses-1/anat/sub-0003022_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BMB_1/sub-0003022/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BMB_1/sub-0003022/ses-1/label/catROI_sub-0003022_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F5/Xk/MD5E-s57837--e02d7bbf7cbe9d07cb6dd1417813de21.mat/MD5E-s57837--e02d7bbf7cbe9d07cb6dd1417813de21.mat

BMB_1/sub-0003022/ses-1/label/catROI_sub-0003022_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2k/xJ/MD5E-s188780--4585982669fce3827435b46d7159d65d.xml/MD5E-s188780--4585982669fce3827435b46d7159d65d.xml

BMB_1/sub-0003022/ses-1/label/catROIs_sub-0003022_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/20/MF/MD5E-s119992--4ad3ef1de9f2dc4faa5b4921093d81d1.mat/MD5E-s119992--4ad3ef1de9f2dc4faa5b4921093d81d1.mat

BMB_1/sub-0003022/ses-1/label/catROIs_sub-0003022_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vp/7F/MD5E-s332133--95f3c18e8920456de85bd03af7a067be.xml/MD5E-s332133--95f3c18e8920456de85bd03af7a067be.xml

BMB_1/sub-0003022/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003022_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BMB_1/sub-0003022/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kj/qM/MD5E-s174519--f7d5e207cfc8f0da518853838dbeba93.nii.gz/MD5E-s174519--f7d5e207cfc8f0da518853838dbeba93.nii.gz

BMB_1/sub-0003022/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003022_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BMB_1/sub-0003022/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0G/4w/MD5E-s196576--425756e8749492fdc34f0b371ca7a5dc.nii.gz/MD5E-s196576--425756e8749492fdc34f0b371ca7a5dc.nii.gz

BMB_1/sub-0003022/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003022_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BMB_1/sub-0003022/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/3x/MD5E-s264430--692a9cfa75100dc9dd9a725342192a42.nii.gz/MD5E-s264430--692a9cfa75100dc9dd9a725342192a42.nii.gz

BMB_1/sub-0003022/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003022_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BMB_1/sub-0003022/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8k/83/MD5E-s295068--9c70096ce0cb1f4aa68a343ec87c90ae.nii.gz/MD5E-s295068--9c70096ce0cb1f4aa68a343ec87c90ae.nii.gz

BMB_1/sub-0003022/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003022_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BMB_1/sub-0003022/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/12/1F/MD5E-s24517--37f72e267a92457a3075ac0530a8fa3c.nii.gz/MD5E-s24517--37f72e267a92457a3075ac0530a8fa3c.nii.gz

BMB_1/sub-0003022/ses-1/mri/aal3_sub-0003022_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BMB_1/sub-0003022/ses-1/mri/aal3_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vg/V7/MD5E-s197845--3be80b38c2b08b78c775a588f2449f20.nii.gz/MD5E-s197845--3be80b38c2b08b78c775a588f2449f20.nii.gz

BMB_1/sub-0003022/ses-1/mri/anatomy3_sub-0003022_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BMB_1/sub-0003022/ses-1/mri/anatomy3_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Q/Fk/MD5E-s146044--8ab94f34399e554aa373637d714f084c.nii.gz/MD5E-s146044--8ab94f34399e554aa373637d714f084c.nii.gz

BMB_1/sub-0003022/ses-1/mri/anon_misub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vj/Z1/MD5E-s5977245--609a827b42b77a1da7046c845836caab.nii.gz/MD5E-s5977245--609a827b42b77a1da7046c845836caab.nii.gz

BMB_1/sub-0003022/ses-1/mri/anon_msub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kM/f3/MD5E-s13445801--4d6dbd7c59d66b5c95dc2a1988f4aad0.nii.gz/MD5E-s13445801--4d6dbd7c59d66b5c95dc2a1988f4aad0.nii.gz

BMB_1/sub-0003022/ses-1/mri/cat_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KW/vq/MD5E-s108234--095e2111fce37116847d98129a6201ec.nii.gz/MD5E-s108234--095e2111fce37116847d98129a6201ec.nii.gz

BMB_1/sub-0003022/ses-1/mri/cobra_sub-0003022_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BMB_1/sub-0003022/ses-1/mri/cobra_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G9/wf/MD5E-s50593--c03e7837a48d8add249e96a0567d1af8.nii.gz/MD5E-s50593--c03e7837a48d8add249e96a0567d1af8.nii.gz

BMB_1/sub-0003022/ses-1/mri/hammers_sub-0003022_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BMB_1/sub-0003022/ses-1/mri/hammers_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j0/w2/MD5E-s156210--40a2b7ad627e54cba0755a44188c6c3e.nii.gz/MD5E-s156210--40a2b7ad627e54cba0755a44188c6c3e.nii.gz

BMB_1/sub-0003022/ses-1/mri/ibsr_sub-0003022_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BMB_1/sub-0003022/ses-1/mri/ibsr_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5F/w5/MD5E-s164031--1ef889f2e5ee32921d9184311f97e15b.nii.gz/MD5E-s164031--1ef889f2e5ee32921d9184311f97e15b.nii.gz

BMB_1/sub-0003022/ses-1/mri/it_sub-0003022_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/30/9J/MD5E-s283--9bfeb6aa644d3d4e34db7de0980e07bd.mat/MD5E-s283--9bfeb6aa644d3d4e34db7de0980e07bd.mat

BMB_1/sub-0003022/ses-1/mri/it_sub-0003022_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/10/MD5E-s284--e8279d47b75b8e3cf3aefec13e152e49.mat/MD5E-s284--e8279d47b75b8e3cf3aefec13e152e49.mat

BMB_1/sub-0003022/ses-1/mri/iy_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V1/14/MD5E-s49851694--29ee4149db1f53bd95abe74e897b0845.nii.gz/MD5E-s49851694--29ee4149db1f53bd95abe74e897b0845.nii.gz

BMB_1/sub-0003022/ses-1/mri/julichbrain_sub-0003022_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BMB_1/sub-0003022/ses-1/mri/julichbrain_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q9/9J/MD5E-s211595--c37543369aa6a658d1a46aba8bfa1aee.nii.gz/MD5E-s211595--c37543369aa6a658d1a46aba8bfa1aee.nii.gz

BMB_1/sub-0003022/ses-1/mri/lpba40_sub-0003022_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BMB_1/sub-0003022/ses-1/mri/lpba40_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wG/wj/MD5E-s153688--6991143c94eef545f6a5a3c7b2d468d1.nii.gz/MD5E-s153688--6991143c94eef545f6a5a3c7b2d468d1.nii.gz

BMB_1/sub-0003022/ses-1/mri/m0wp1sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w4/f0/MD5E-s2588099--0431d228a8d0f03280f8ca0a20cb6615.nii.gz/MD5E-s2588099--0431d228a8d0f03280f8ca0a20cb6615.nii.gz

BMB_1/sub-0003022/ses-1/mri/m0wp2sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q9/6V/MD5E-s2308079--61d0a890a1ff945a4e2ecaab75a69a02.nii.gz/MD5E-s2308079--61d0a890a1ff945a4e2ecaab75a69a02.nii.gz

BMB_1/sub-0003022/ses-1/mri/m0wp3sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qx/q9/MD5E-s2666604--4c5ce55e537c932718738485ed987642.nii.gz/MD5E-s2666604--4c5ce55e537c932718738485ed987642.nii.gz

BMB_1/sub-0003022/ses-1/mri/mori_sub-0003022_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BMB_1/sub-0003022/ses-1/mri/mori_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1W/wJ/MD5E-s181533--ed85ca00535dbe115aef64f82d958f27.nii.gz/MD5E-s181533--ed85ca00535dbe115aef64f82d958f27.nii.gz

BMB_1/sub-0003022/ses-1/mri/mwp1sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/60/VV/MD5E-s2588504--c3babf70157781745218d82ec300c94c.nii.gz/MD5E-s2588504--c3babf70157781745218d82ec300c94c.nii.gz

BMB_1/sub-0003022/ses-1/mri/mwp2sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V0/1F/MD5E-s2301536--362b6fb2dcad1f7ece6d5259c76295b3.nii.gz/MD5E-s2301536--362b6fb2dcad1f7ece6d5259c76295b3.nii.gz

BMB_1/sub-0003022/ses-1/mri/mwp3sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/68/MD5E-s2662786--df36971c7d749b3c0077ffeadc4f9dfc.nii.gz/MD5E-s2662786--df36971c7d749b3c0077ffeadc4f9dfc.nii.gz

BMB_1/sub-0003022/ses-1/mri/neuromorphometrics_sub-0003022_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BMB_1/sub-0003022/ses-1/mri/neuromorphometrics_sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2m/qK/MD5E-s213434--e58c1e115474995e83398128eb7a9fba.nii.gz/MD5E-s213434--e58c1e115474995e83398128eb7a9fba.nii.gz

BMB_1/sub-0003022/ses-1/mri/p0sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W4/vw/MD5E-s692370--c2a4d87f0c19df80eb07a6fad14997e9.nii.gz/MD5E-s692370--c2a4d87f0c19df80eb07a6fad14997e9.nii.gz

BMB_1/sub-0003022/ses-1/mri/p1sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MP/vm/MD5E-s725595--23ec54dd93f53d4ae5c2606a8cb65dce.nii.gz/MD5E-s725595--23ec54dd93f53d4ae5c2606a8cb65dce.nii.gz

BMB_1/sub-0003022/ses-1/mri/p2sub-0003022_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7v/Pf/MD5E-s458741--cd480ef1f97fe244a96944cde1a3e897.nii.gz/MD5E-s458741--cd480ef1f97fe244a96944cde1a3e897.nii.gz

BMB_1/sub-0003022/ses-1/mri/p3sub-0003022_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/3m/PV/MD5E-s450402--ccbf171678a3b381bebbb1efb5dcc57a.nii.gz/MD5E-s450402--ccbf171678a3b381bebbb1efb5dcc57a.nii.gz

BMB_1/sub-0003022/ses-1/mri/rp1sub-0003022_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BMB_1/sub-0003022/ses-1/mri/rp2sub-0003022_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BMB_1/sub-0003022/ses-1/mri/rp3sub-0003022_ses-1_run-1_T1w_affine.nii.gz

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BMB_1/sub-0003022/ses-1/mri/t_sub-0003022_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K2/0w/MD5E-s284--1f958cfbb2e9306d7df833e86e7e64f4.mat/MD5E-s284--1f958cfbb2e9306d7df833e86e7e64f4.mat

BMB_1/sub-0003022/ses-1/mri/t_sub-0003022_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MF/kP/MD5E-s285--d64637c88640855b13288d0f7cbb4d7e.mat/MD5E-s285--d64637c88640855b13288d0f7cbb4d7e.mat

BMB_1/sub-0003022/ses-1/mri/thalamus_sub-0003022_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BMB_1/sub-0003022/ses-1/mri/thalamus_sub-0003022_ses-1_run-1_T1w.nii.gz

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