[DATALAD RUNCMD] Compute SWU_4/sub-0025678/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025678/ses-1/anat/sub-0025678_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025678/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025678/ses-1/label/catROI_sub-0025678_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/9v/MD5E-s61228--206a61fb5c584f446bf55ff2d6f0ee49.mat/MD5E-s61228--206a61fb5c584f446bf55ff2d6f0ee49.mat

SWU_4/sub-0025678/ses-1/label/catROI_sub-0025678_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j7/g6/MD5E-s188920--b12e8cbd81ae7bb4a0db9df60f52f790.xml/MD5E-s188920--b12e8cbd81ae7bb4a0db9df60f52f790.xml

SWU_4/sub-0025678/ses-1/label/catROIs_sub-0025678_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8P/2f/MD5E-s120074--665acba6316a4af7d71f771533e2fa75.mat/MD5E-s120074--665acba6316a4af7d71f771533e2fa75.mat

SWU_4/sub-0025678/ses-1/label/catROIs_sub-0025678_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VP/84/MD5E-s332120--b0ac65c752e708d396a175f4e812fe90.xml/MD5E-s332120--b0ac65c752e708d396a175f4e812fe90.xml

SWU_4/sub-0025678/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025678_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025678/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qG/8m/MD5E-s160294--a44083ebc23a850e599ee6ff8a9accd8.nii.gz/MD5E-s160294--a44083ebc23a850e599ee6ff8a9accd8.nii.gz

SWU_4/sub-0025678/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025678_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025678/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KQ/4Q/MD5E-s179097--6b14210d96ad70e51bee1c889bb375ac.nii.gz/MD5E-s179097--6b14210d96ad70e51bee1c889bb375ac.nii.gz

SWU_4/sub-0025678/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025678_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025678/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MW/gJ/MD5E-s241310--2365451138b4bae570391ebf9085e84a.nii.gz/MD5E-s241310--2365451138b4bae570391ebf9085e84a.nii.gz

SWU_4/sub-0025678/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025678_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025678/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3q/F3/MD5E-s268587--c9cae1706e095d243bfd823cc4a726e3.nii.gz/MD5E-s268587--c9cae1706e095d243bfd823cc4a726e3.nii.gz

SWU_4/sub-0025678/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025678_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025678/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/mp/MD5E-s25148--02216ae40df36b3ae8aae8c2c1ae41e8.nii.gz/MD5E-s25148--02216ae40df36b3ae8aae8c2c1ae41e8.nii.gz

SWU_4/sub-0025678/ses-1/mri/aal3_sub-0025678_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025678/ses-1/mri/aal3_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X3/mG/MD5E-s180852--90f74ebc251e34eb95d8a08151b83eec.nii.gz/MD5E-s180852--90f74ebc251e34eb95d8a08151b83eec.nii.gz

SWU_4/sub-0025678/ses-1/mri/anatomy3_sub-0025678_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025678/ses-1/mri/anatomy3_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vm/Vj/MD5E-s131667--9bc319928288233880df821aa8908f27.nii.gz/MD5E-s131667--9bc319928288233880df821aa8908f27.nii.gz

SWU_4/sub-0025678/ses-1/mri/anon_misub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JQ/Q5/MD5E-s8200345--f9b1e383cc166f43832676db8cc3e803.nii.gz/MD5E-s8200345--f9b1e383cc166f43832676db8cc3e803.nii.gz

SWU_4/sub-0025678/ses-1/mri/anon_msub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p5/43/MD5E-s7920276--5530738ccebc26a7200a193b266d696f.nii.gz/MD5E-s7920276--5530738ccebc26a7200a193b266d696f.nii.gz

SWU_4/sub-0025678/ses-1/mri/cat_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v8/9z/MD5E-s97889--0d08458b2845dda31f9a85503ef3a9b1.nii.gz/MD5E-s97889--0d08458b2845dda31f9a85503ef3a9b1.nii.gz

SWU_4/sub-0025678/ses-1/mri/cobra_sub-0025678_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025678/ses-1/mri/cobra_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vp/kq/MD5E-s47359--6e485f6e5b9713186fa1fa8eaaa84523.nii.gz/MD5E-s47359--6e485f6e5b9713186fa1fa8eaaa84523.nii.gz

SWU_4/sub-0025678/ses-1/mri/hammers_sub-0025678_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025678/ses-1/mri/hammers_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f6/jK/MD5E-s143115--57fc050feb607ef870b57c9ac00b9067.nii.gz/MD5E-s143115--57fc050feb607ef870b57c9ac00b9067.nii.gz

SWU_4/sub-0025678/ses-1/mri/ibsr_sub-0025678_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025678/ses-1/mri/ibsr_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3f/Jz/MD5E-s151304--6cac9cd5e337a6fa8a88d5724331130e.nii.gz/MD5E-s151304--6cac9cd5e337a6fa8a88d5724331130e.nii.gz

SWU_4/sub-0025678/ses-1/mri/it_sub-0025678_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xj/2Z/MD5E-s283--6217e3a5b753bb21e7f2f6043a01432b.mat/MD5E-s283--6217e3a5b753bb21e7f2f6043a01432b.mat

SWU_4/sub-0025678/ses-1/mri/it_sub-0025678_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7V/vF/MD5E-s283--66db278172469271b99cdf428c2c24ea.mat/MD5E-s283--66db278172469271b99cdf428c2c24ea.mat

SWU_4/sub-0025678/ses-1/mri/iy_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xp/Xv/MD5E-s44405120--e756fc28a18b841f7b2bbe36551105b4.nii.gz/MD5E-s44405120--e756fc28a18b841f7b2bbe36551105b4.nii.gz

SWU_4/sub-0025678/ses-1/mri/julichbrain_sub-0025678_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025678/ses-1/mri/julichbrain_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W3/Mm/MD5E-s191513--5d24bfbc5311a4c06afaa647ff9249b4.nii.gz/MD5E-s191513--5d24bfbc5311a4c06afaa647ff9249b4.nii.gz

SWU_4/sub-0025678/ses-1/mri/lpba40_sub-0025678_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025678/ses-1/mri/lpba40_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gJ/VJ/MD5E-s140633--e9c272d984397d088ca6868e061f1c43.nii.gz/MD5E-s140633--e9c272d984397d088ca6868e061f1c43.nii.gz

SWU_4/sub-0025678/ses-1/mri/m0wp1sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/ZJ/MD5E-s2580220--b1b4c227fdf8f2245d69ab1beae1feb3.nii.gz/MD5E-s2580220--b1b4c227fdf8f2245d69ab1beae1feb3.nii.gz

SWU_4/sub-0025678/ses-1/mri/m0wp2sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V4/PV/MD5E-s2294823--c39e60ed938358181ea05be58e9bbd4e.nii.gz/MD5E-s2294823--c39e60ed938358181ea05be58e9bbd4e.nii.gz

SWU_4/sub-0025678/ses-1/mri/m0wp3sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PZ/K1/MD5E-s2540308--a339fc0999e722bd0f895d776600ef09.nii.gz/MD5E-s2540308--a339fc0999e722bd0f895d776600ef09.nii.gz

SWU_4/sub-0025678/ses-1/mri/mori_sub-0025678_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025678/ses-1/mri/mori_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8W/Qk/MD5E-s166892--04bfdcc0cc2130418eb7979dfa4eb56b.nii.gz/MD5E-s166892--04bfdcc0cc2130418eb7979dfa4eb56b.nii.gz

SWU_4/sub-0025678/ses-1/mri/mwp1sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JX/Wx/MD5E-s2587427--1d19f5f7d7e7d1c7caa3800902bc92e5.nii.gz/MD5E-s2587427--1d19f5f7d7e7d1c7caa3800902bc92e5.nii.gz

SWU_4/sub-0025678/ses-1/mri/mwp2sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mx/qz/MD5E-s2297462--9dc15cca18a26e7f5d2bca0ae4b79f83.nii.gz/MD5E-s2297462--9dc15cca18a26e7f5d2bca0ae4b79f83.nii.gz

SWU_4/sub-0025678/ses-1/mri/mwp3sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mW/1p/MD5E-s2538532--3094e504e60cdcce8156c020e4fddbf8.nii.gz/MD5E-s2538532--3094e504e60cdcce8156c020e4fddbf8.nii.gz

SWU_4/sub-0025678/ses-1/mri/neuromorphometrics_sub-0025678_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025678/ses-1/mri/neuromorphometrics_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/95/xq/MD5E-s194607--efbf804eff5ecc11303fcd46b4abff42.nii.gz/MD5E-s194607--efbf804eff5ecc11303fcd46b4abff42.nii.gz

SWU_4/sub-0025678/ses-1/mri/p0sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7j/9q/MD5E-s617303--f1c2e06977d5bceec315a342d28bfa5a.nii.gz/MD5E-s617303--f1c2e06977d5bceec315a342d28bfa5a.nii.gz

SWU_4/sub-0025678/ses-1/mri/p1sub-0025678_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/1q/6x/MD5E-s654383--228d8f5b7b62ae4258ffd2f6acea529d.nii.gz/MD5E-s654383--228d8f5b7b62ae4258ffd2f6acea529d.nii.gz

SWU_4/sub-0025678/ses-1/mri/p2sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kq/Wx/MD5E-s427982--a2df7932b6e9d7c043da7cd11147da20.nii.gz/MD5E-s427982--a2df7932b6e9d7c043da7cd11147da20.nii.gz

SWU_4/sub-0025678/ses-1/mri/p3sub-0025678_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025678/ses-1/mri/rp1sub-0025678_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025678/ses-1/mri/rp2sub-0025678_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025678/ses-1/mri/rp3sub-0025678_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025678/ses-1/mri/t_sub-0025678_ses-1_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025678/ses-1/mri/t_sub-0025678_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/z2/MD5E-s284--60edc6bcffd25ec6033ea44314c46fd2.mat/MD5E-s284--60edc6bcffd25ec6033ea44314c46fd2.mat

SWU_4/sub-0025678/ses-1/mri/thalamus_sub-0025678_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025678/ses-1/mri/thalamus_sub-0025678_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025678/ses-1/mri/wj_sub-0025678_ses-1_run-1_T1w.nii.gz

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