[DATALAD RUNCMD] Compute SWU_4/sub-0025836/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025836/ses-1/anat/sub-0025836_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025836/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025836/ses-1/label/catROI_sub-0025836_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W0/X3/MD5E-s61215--167a0c5d469eb2d904b70a8054142649.mat/MD5E-s61215--167a0c5d469eb2d904b70a8054142649.mat

SWU_4/sub-0025836/ses-1/label/catROI_sub-0025836_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2p/k4/MD5E-s189074--bc9224e49e0fb892a8e68a4347b3a711.xml/MD5E-s189074--bc9224e49e0fb892a8e68a4347b3a711.xml

SWU_4/sub-0025836/ses-1/label/catROIs_sub-0025836_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pj/F8/MD5E-s119987--7ddc90996b1289041e5faafcfa44810d.mat/MD5E-s119987--7ddc90996b1289041e5faafcfa44810d.mat

SWU_4/sub-0025836/ses-1/label/catROIs_sub-0025836_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6V/Mz/MD5E-s332092--77cfa7bbf7be4fa39a1094eea7a552f2.xml/MD5E-s332092--77cfa7bbf7be4fa39a1094eea7a552f2.xml

SWU_4/sub-0025836/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025836_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025836/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mJ/KZ/MD5E-s155132--fb2a8ce71463c2481b77c32344bc706a.nii.gz/MD5E-s155132--fb2a8ce71463c2481b77c32344bc706a.nii.gz

SWU_4/sub-0025836/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025836_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025836/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/07/MD5E-s173255--77f4aff13f88307d9cbc4403ddc6e737.nii.gz/MD5E-s173255--77f4aff13f88307d9cbc4403ddc6e737.nii.gz

SWU_4/sub-0025836/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025836_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025836/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/jw/MD5E-s234910--4b064430e2fa1a27abb97f86c66ee4c8.nii.gz/MD5E-s234910--4b064430e2fa1a27abb97f86c66ee4c8.nii.gz

SWU_4/sub-0025836/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025836_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025836/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zm/6q/MD5E-s261246--ea7ec4554085f481a69d0e1ff24b87e3.nii.gz/MD5E-s261246--ea7ec4554085f481a69d0e1ff24b87e3.nii.gz

SWU_4/sub-0025836/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025836_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025836/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PP/mF/MD5E-s23686--112901c199d5fb32563b82de204731d8.nii.gz/MD5E-s23686--112901c199d5fb32563b82de204731d8.nii.gz

SWU_4/sub-0025836/ses-1/mri/aal3_sub-0025836_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025836/ses-1/mri/aal3_sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z7/2p/MD5E-s175515--e41a1b10e1febad464c5a80f0567011c.nii.gz/MD5E-s175515--e41a1b10e1febad464c5a80f0567011c.nii.gz

SWU_4/sub-0025836/ses-1/mri/anatomy3_sub-0025836_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025836/ses-1/mri/anatomy3_sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fk/3V/MD5E-s126279--c1edc1ced47adb63a4e6b7479884a143.nii.gz/MD5E-s126279--c1edc1ced47adb63a4e6b7479884a143.nii.gz

SWU_4/sub-0025836/ses-1/mri/anon_misub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qX/qV/MD5E-s8893236--2f346c2c070e843779e40630660ee9d5.nii.gz/MD5E-s8893236--2f346c2c070e843779e40630660ee9d5.nii.gz

SWU_4/sub-0025836/ses-1/mri/anon_msub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kj/G6/MD5E-s10232574--b6e09df4f67219032539b3d0497f7804.nii.gz/MD5E-s10232574--b6e09df4f67219032539b3d0497f7804.nii.gz

SWU_4/sub-0025836/ses-1/mri/cat_sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G1/kX/MD5E-s94974--40448574c71e46258b49bc42a9809401.nii.gz/MD5E-s94974--40448574c71e46258b49bc42a9809401.nii.gz

SWU_4/sub-0025836/ses-1/mri/cobra_sub-0025836_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025836/ses-1/mri/cobra_sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zF/7F/MD5E-s47065--9cd8aafd3c1dac3e444f70a13b5828a2.nii.gz/MD5E-s47065--9cd8aafd3c1dac3e444f70a13b5828a2.nii.gz

SWU_4/sub-0025836/ses-1/mri/hammers_sub-0025836_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025836/ses-1/mri/hammers_sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9k/5p/MD5E-s139190--6fb07d63fa57c3b3e02745f697750051.nii.gz/MD5E-s139190--6fb07d63fa57c3b3e02745f697750051.nii.gz

SWU_4/sub-0025836/ses-1/mri/ibsr_sub-0025836_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025836/ses-1/mri/ibsr_sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/53/2w/MD5E-s146544--5ce2a700fb4b4c665b46d4043482af80.nii.gz/MD5E-s146544--5ce2a700fb4b4c665b46d4043482af80.nii.gz

SWU_4/sub-0025836/ses-1/mri/it_sub-0025836_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7p/gZ/MD5E-s283--ae012d321542db7b82bf37c6ce4e68f8.mat/MD5E-s283--ae012d321542db7b82bf37c6ce4e68f8.mat

SWU_4/sub-0025836/ses-1/mri/it_sub-0025836_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pv/KK/MD5E-s284--ace19839e59b20995e13fdf612ef85b0.mat/MD5E-s284--ace19839e59b20995e13fdf612ef85b0.mat

SWU_4/sub-0025836/ses-1/mri/iy_sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0P/7m/MD5E-s42426136--40e83aa129a21f0b736199d4b1ea80d4.nii.gz/MD5E-s42426136--40e83aa129a21f0b736199d4b1ea80d4.nii.gz

SWU_4/sub-0025836/ses-1/mri/julichbrain_sub-0025836_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025836/ses-1/mri/julichbrain_sub-0025836_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025836/ses-1/mri/lpba40_sub-0025836_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025836/ses-1/mri/lpba40_sub-0025836_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025836/ses-1/mri/m0wp1sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v0/P0/MD5E-s2578752--3b3296a6b4714e5745b51d790d92eaa5.nii.gz/MD5E-s2578752--3b3296a6b4714e5745b51d790d92eaa5.nii.gz

SWU_4/sub-0025836/ses-1/mri/m0wp2sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025836/ses-1/mri/m0wp3sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gK/GW/MD5E-s2620450--05bb13f4973b17575f1207b7b8bc1e52.nii.gz/MD5E-s2620450--05bb13f4973b17575f1207b7b8bc1e52.nii.gz

SWU_4/sub-0025836/ses-1/mri/mori_sub-0025836_ses-1_run-1_T1w.csv

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SWU_4/sub-0025836/ses-1/mri/mori_sub-0025836_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025836/ses-1/mri/mwp1sub-0025836_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025836/ses-1/mri/mwp2sub-0025836_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025836/ses-1/mri/mwp3sub-0025836_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025836/ses-1/mri/neuromorphometrics_sub-0025836_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025836/ses-1/mri/neuromorphometrics_sub-0025836_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025836/ses-1/mri/p0sub-0025836_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025836/ses-1/mri/p1sub-0025836_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025836/ses-1/mri/p2sub-0025836_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025836/ses-1/mri/p3sub-0025836_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025836/ses-1/mri/rp1sub-0025836_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025836/ses-1/mri/rp2sub-0025836_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025836/ses-1/mri/rp3sub-0025836_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025836/ses-1/mri/t_sub-0025836_ses-1_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025836/ses-1/mri/t_sub-0025836_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025836/ses-1/mri/thalamus_sub-0025836_ses-1_run-1_T1w.csv

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SWU_4/sub-0025836/ses-1/mri/thalamus_sub-0025836_ses-1_run-1_T1w.nii.gz

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