[DATALAD RUNCMD] Compute XHCUMS/sub-0025994/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/XHCUMS/sub-0025994/ses-3/anat/sub-0025994_ses-3_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "XHCUMS/sub-0025994/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

XHCUMS/sub-0025994/ses-3/label/catROI_sub-0025994_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3P/qP/MD5E-s61418--8c31b4c0e9bb62af0547272c91972be5.mat/MD5E-s61418--8c31b4c0e9bb62af0547272c91972be5.mat

XHCUMS/sub-0025994/ses-3/label/catROI_sub-0025994_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KK/xF/MD5E-s188857--ebd248bf1caad0f4c4b33647c1ce75a0.xml/MD5E-s188857--ebd248bf1caad0f4c4b33647c1ce75a0.xml

XHCUMS/sub-0025994/ses-3/label/catROIs_sub-0025994_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kM/G1/MD5E-s120193--794013504a842f700c771d15b6dfd5a6.mat/MD5E-s120193--794013504a842f700c771d15b6dfd5a6.mat

XHCUMS/sub-0025994/ses-3/label/catROIs_sub-0025994_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j6/M8/MD5E-s332149--d9499c2895947cd6d735ecc698530dec.xml/MD5E-s332149--d9499c2895947cd6d735ecc698530dec.xml

XHCUMS/sub-0025994/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025994_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

XHCUMS/sub-0025994/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025994_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3j/X2/MD5E-s179646--528338073bb1323fb9b488d09659c247.nii.gz/MD5E-s179646--528338073bb1323fb9b488d09659c247.nii.gz

XHCUMS/sub-0025994/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025994_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

XHCUMS/sub-0025994/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025994_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xJ/09/MD5E-s203366--013c3c6ba86e4610e6b7127205ce11c5.nii.gz/MD5E-s203366--013c3c6ba86e4610e6b7127205ce11c5.nii.gz

XHCUMS/sub-0025994/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025994_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

XHCUMS/sub-0025994/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025994_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z1/ZK/MD5E-s273711--b57ea240d9f625dc8842bd750d6fbd52.nii.gz/MD5E-s273711--b57ea240d9f625dc8842bd750d6fbd52.nii.gz

XHCUMS/sub-0025994/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025994_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

XHCUMS/sub-0025994/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025994_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z0/5J/MD5E-s305446--abd8a88eef174cdabeea67f3db506e0b.nii.gz/MD5E-s305446--abd8a88eef174cdabeea67f3db506e0b.nii.gz

XHCUMS/sub-0025994/ses-3/mri/Tian_Subcortex_S2_7T_sub-0025994_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0025994/ses-3/mri/Tian_Subcortex_S2_7T_sub-0025994_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4Z/Xk/MD5E-s26220--b3fec344be668bb83f3d8ee23f69ea7a.nii.gz/MD5E-s26220--b3fec344be668bb83f3d8ee23f69ea7a.nii.gz

XHCUMS/sub-0025994/ses-3/mri/aal3_sub-0025994_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0025994/ses-3/mri/aal3_sub-0025994_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JP/w1/MD5E-s206590--867a866a46a146e2c1aae5622cc84f6a.nii.gz/MD5E-s206590--867a866a46a146e2c1aae5622cc84f6a.nii.gz

XHCUMS/sub-0025994/ses-3/mri/anatomy3_sub-0025994_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0025994/ses-3/mri/anatomy3_sub-0025994_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W9/29/MD5E-s149565--15913895101200927e2506561f12391e.nii.gz/MD5E-s149565--15913895101200927e2506561f12391e.nii.gz

XHCUMS/sub-0025994/ses-3/mri/anon_misub-0025994_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fw/4q/MD5E-s10630981--ba9d76c06a6ca8d7ad7140c67feb6904.nii.gz/MD5E-s10630981--ba9d76c06a6ca8d7ad7140c67feb6904.nii.gz

XHCUMS/sub-0025994/ses-3/mri/anon_msub-0025994_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/Vk/MD5E-s11576118--eb998f3edd7127170da19248f13b03c5.nii.gz/MD5E-s11576118--eb998f3edd7127170da19248f13b03c5.nii.gz

XHCUMS/sub-0025994/ses-3/mri/cat_sub-0025994_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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XHCUMS/sub-0025994/ses-3/mri/cobra_sub-0025994_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

XHCUMS/sub-0025994/ses-3/mri/cobra_sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/hammers_sub-0025994_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

XHCUMS/sub-0025994/ses-3/mri/hammers_sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/ibsr_sub-0025994_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

XHCUMS/sub-0025994/ses-3/mri/ibsr_sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/it_sub-0025994_ses-3_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V8/9X/MD5E-s283--d42d26763f4fef35eadc1b7c68ac4d5f.mat/MD5E-s283--d42d26763f4fef35eadc1b7c68ac4d5f.mat

XHCUMS/sub-0025994/ses-3/mri/it_sub-0025994_ses-3_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fz/Jf/MD5E-s283--fb799861372b347cf63cdbc7344631b2.mat/MD5E-s283--fb799861372b347cf63cdbc7344631b2.mat

XHCUMS/sub-0025994/ses-3/mri/iy_sub-0025994_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fj/Qw/MD5E-s53237329--c10e0b539ba820a84bacf1863127fb2b.nii.gz/MD5E-s53237329--c10e0b539ba820a84bacf1863127fb2b.nii.gz

XHCUMS/sub-0025994/ses-3/mri/julichbrain_sub-0025994_ses-3_run-1_T1w.csv

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XHCUMS/sub-0025994/ses-3/mri/julichbrain_sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/lpba40_sub-0025994_ses-3_run-1_T1w.csv

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XHCUMS/sub-0025994/ses-3/mri/lpba40_sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/m0wp1sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/m0wp2sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/m0wp3sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/mori_sub-0025994_ses-3_run-1_T1w.csv

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XHCUMS/sub-0025994/ses-3/mri/mori_sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/mwp1sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/mwp2sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/mwp3sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/neuromorphometrics_sub-0025994_ses-3_run-1_T1w.csv

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XHCUMS/sub-0025994/ses-3/mri/neuromorphometrics_sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/p0sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/p1sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/p2sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/p3sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/rp1sub-0025994_ses-3_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/rp2sub-0025994_ses-3_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/rp3sub-0025994_ses-3_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/t_sub-0025994_ses-3_run-1_T1w_affine_reorient.mat

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XHCUMS/sub-0025994/ses-3/mri/t_sub-0025994_ses-3_run-1_T1w_rigid_reorient.mat

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XHCUMS/sub-0025994/ses-3/mri/thalamus_sub-0025994_ses-3_run-1_T1w.csv

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XHCUMS/sub-0025994/ses-3/mri/thalamus_sub-0025994_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025994/ses-3/mri/wj_sub-0025994_ses-3_run-1_T1w.nii.gz

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