[DATALAD RUNCMD] Compute NYU_2/sub-0025176/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025176/ses-1/anat/sub-0025176_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025176/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025176/ses-1/label/catROI_sub-0025176_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v5/2K/MD5E-s57807--a313db1735fd507b89475c1037330e97.mat/MD5E-s57807--a313db1735fd507b89475c1037330e97.mat

NYU_2/sub-0025176/ses-1/label/catROI_sub-0025176_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/Mv/MD5E-s188657--476282ed4abfcc3878a41344a9a52646.xml/MD5E-s188657--476282ed4abfcc3878a41344a9a52646.xml

NYU_2/sub-0025176/ses-1/label/catROIs_sub-0025176_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x4/fk/MD5E-s120300--2f72f14b8d13182407b3769238ca4a14.mat/MD5E-s120300--2f72f14b8d13182407b3769238ca4a14.mat

NYU_2/sub-0025176/ses-1/label/catROIs_sub-0025176_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j8/1X/MD5E-s332129--0b462da7ff1511ba42cbce2d7f201092.xml/MD5E-s332129--0b462da7ff1511ba42cbce2d7f201092.xml

NYU_2/sub-0025176/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025176_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025176/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jK/Mp/MD5E-s144140--b5b04ff0b6988f9d3c34095853f0c618.nii.gz/MD5E-s144140--b5b04ff0b6988f9d3c34095853f0c618.nii.gz

NYU_2/sub-0025176/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025176_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025176/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5g/zM/MD5E-s159725--c367b795964a9066597d74f03cd81408.nii.gz/MD5E-s159725--c367b795964a9066597d74f03cd81408.nii.gz

NYU_2/sub-0025176/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025176_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025176/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3P/m5/MD5E-s216064--0e4989b30d35e44c101025fda4f460cf.nii.gz/MD5E-s216064--0e4989b30d35e44c101025fda4f460cf.nii.gz

NYU_2/sub-0025176/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025176_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025176/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/78/08/MD5E-s239004--986a8f1bf759f278186f656263dc8009.nii.gz/MD5E-s239004--986a8f1bf759f278186f656263dc8009.nii.gz

NYU_2/sub-0025176/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025176_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025176/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MK/z6/MD5E-s19453--679f13d691fbb4b5748afbcd5f0c7658.nii.gz/MD5E-s19453--679f13d691fbb4b5748afbcd5f0c7658.nii.gz

NYU_2/sub-0025176/ses-1/mri/aal3_sub-0025176_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025176/ses-1/mri/aal3_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/V5/MD5E-s161627--599b55929cdd762c7969e8c8a232735d.nii.gz/MD5E-s161627--599b55929cdd762c7969e8c8a232735d.nii.gz

NYU_2/sub-0025176/ses-1/mri/anatomy3_sub-0025176_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025176/ses-1/mri/anatomy3_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/7p/MD5E-s114983--7fdad996cbb850e9023c0990d5b39a18.nii.gz/MD5E-s114983--7fdad996cbb850e9023c0990d5b39a18.nii.gz

NYU_2/sub-0025176/ses-1/mri/anon_misub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q6/7m/MD5E-s3363213--dcf94867a490d1e72852fa998b2813a1.nii.gz/MD5E-s3363213--dcf94867a490d1e72852fa998b2813a1.nii.gz

NYU_2/sub-0025176/ses-1/mri/anon_msub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mj/Qf/MD5E-s9298746--be5261b7231b19f259c52582f9932a8d.nii.gz/MD5E-s9298746--be5261b7231b19f259c52582f9932a8d.nii.gz

NYU_2/sub-0025176/ses-1/mri/cat_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/KK/MD5E-s87110--a75d6b9e825c81788042144f7d8a83dc.nii.gz/MD5E-s87110--a75d6b9e825c81788042144f7d8a83dc.nii.gz

NYU_2/sub-0025176/ses-1/mri/cobra_sub-0025176_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025176/ses-1/mri/cobra_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/30/K4/MD5E-s38665--99317f94f29ce4f2eb50708630902cc4.nii.gz/MD5E-s38665--99317f94f29ce4f2eb50708630902cc4.nii.gz

NYU_2/sub-0025176/ses-1/mri/hammers_sub-0025176_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025176/ses-1/mri/hammers_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/80/MD5E-s124898--1571b941d6b1b717de72e3357b5ec34b.nii.gz/MD5E-s124898--1571b941d6b1b717de72e3357b5ec34b.nii.gz

NYU_2/sub-0025176/ses-1/mri/ibsr_sub-0025176_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025176/ses-1/mri/ibsr_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GP/Zz/MD5E-s132204--5c38a8b29f3c346a78e490f8da2629bb.nii.gz/MD5E-s132204--5c38a8b29f3c346a78e490f8da2629bb.nii.gz

NYU_2/sub-0025176/ses-1/mri/it_sub-0025176_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VG/Fq/MD5E-s283--9a3d099f4b964b03e7dc4699c6965d6b.mat/MD5E-s283--9a3d099f4b964b03e7dc4699c6965d6b.mat

NYU_2/sub-0025176/ses-1/mri/it_sub-0025176_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/09/MD5E-s283--223ea61f4715866a1eae781c4b6d113f.mat/MD5E-s283--223ea61f4715866a1eae781c4b6d113f.mat

NYU_2/sub-0025176/ses-1/mri/iy_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3G/PZ/MD5E-s31121993--2671e340d9a2dab877588bf1916f3e9e.nii.gz/MD5E-s31121993--2671e340d9a2dab877588bf1916f3e9e.nii.gz

NYU_2/sub-0025176/ses-1/mri/julichbrain_sub-0025176_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025176/ses-1/mri/julichbrain_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Q/46/MD5E-s169445--ebb875b8d33bde87a4ab7d90bba748e9.nii.gz/MD5E-s169445--ebb875b8d33bde87a4ab7d90bba748e9.nii.gz

NYU_2/sub-0025176/ses-1/mri/lpba40_sub-0025176_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025176/ses-1/mri/lpba40_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025176/ses-1/mri/m0wp1sub-0025176_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/zx/Gk/MD5E-s2616802--e9aaa113d60dec6784ca95db23716d72.nii.gz/MD5E-s2616802--e9aaa113d60dec6784ca95db23716d72.nii.gz

NYU_2/sub-0025176/ses-1/mri/m0wp2sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8f/X7/MD5E-s2269785--847d2ab3fff159216e97297d0f560e92.nii.gz/MD5E-s2269785--847d2ab3fff159216e97297d0f560e92.nii.gz

NYU_2/sub-0025176/ses-1/mri/m0wp3sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mj/wj/MD5E-s2344598--467e51421d934643ec455e11da6a7adb.nii.gz/MD5E-s2344598--467e51421d934643ec455e11da6a7adb.nii.gz

NYU_2/sub-0025176/ses-1/mri/mori_sub-0025176_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025176/ses-1/mri/mori_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025176/ses-1/mri/mwp1sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/Kz/MD5E-s2620694--dab71316b281b64a5d0b32e300c7a9db.nii.gz/MD5E-s2620694--dab71316b281b64a5d0b32e300c7a9db.nii.gz

NYU_2/sub-0025176/ses-1/mri/mwp2sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025176/ses-1/mri/mwp3sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025176/ses-1/mri/neuromorphometrics_sub-0025176_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025176/ses-1/mri/neuromorphometrics_sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025176/ses-1/mri/p0sub-0025176_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025176/ses-1/mri/p1sub-0025176_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025176/ses-1/mri/p2sub-0025176_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025176/ses-1/mri/p3sub-0025176_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025176/ses-1/mri/rp1sub-0025176_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025176/ses-1/mri/rp2sub-0025176_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025176/ses-1/mri/rp3sub-0025176_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025176/ses-1/mri/t_sub-0025176_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025176/ses-1/mri/t_sub-0025176_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025176/ses-1/mri/thalamus_sub-0025176_ses-1_run-1_T1w.csv

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NYU_2/sub-0025176/ses-1/mri/thalamus_sub-0025176_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025176/ses-1/mri/wj_sub-0025176_ses-1_run-1_T1w.nii.gz

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