[DATALAD RUNCMD] Compute SWU_4/sub-0025742/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025742/ses-1/anat/sub-0025742_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025742/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025742/ses-1/label/catROI_sub-0025742_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W6/PJ/MD5E-s61252--0891df328b0b8f487a284c730592c6d2.mat/MD5E-s61252--0891df328b0b8f487a284c730592c6d2.mat

SWU_4/sub-0025742/ses-1/label/catROI_sub-0025742_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mJ/06/MD5E-s188970--6daf92a315216b2c0a5d9daf13aaf875.xml/MD5E-s188970--6daf92a315216b2c0a5d9daf13aaf875.xml

SWU_4/sub-0025742/ses-1/label/catROIs_sub-0025742_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X5/zM/MD5E-s120173--8a2ef2b3b2e76b95d5dcf5466e99006d.mat/MD5E-s120173--8a2ef2b3b2e76b95d5dcf5466e99006d.mat

SWU_4/sub-0025742/ses-1/label/catROIs_sub-0025742_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/vP/MD5E-s332243--e777be1d14a65d1399b16618394c0d9b.xml/MD5E-s332243--e777be1d14a65d1399b16618394c0d9b.xml

SWU_4/sub-0025742/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025742_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025742/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/fJ/MD5E-s156535--175e5636bc607b043611a7ccb844cc63.nii.gz/MD5E-s156535--175e5636bc607b043611a7ccb844cc63.nii.gz

SWU_4/sub-0025742/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025742_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025742/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8x/Gz/MD5E-s175719--48cb5e5366028e5b76f5a2ed904f2861.nii.gz/MD5E-s175719--48cb5e5366028e5b76f5a2ed904f2861.nii.gz

SWU_4/sub-0025742/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025742_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025742/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9Q/3k/MD5E-s235602--ff05c6fd50cbf21500309cff0b8896c7.nii.gz/MD5E-s235602--ff05c6fd50cbf21500309cff0b8896c7.nii.gz

SWU_4/sub-0025742/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025742_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025742/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JP/7W/MD5E-s263260--00ceb8a4a6dcd8fcad5e59ec4e774ee2.nii.gz/MD5E-s263260--00ceb8a4a6dcd8fcad5e59ec4e774ee2.nii.gz

SWU_4/sub-0025742/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025742_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025742/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gz/4J/MD5E-s24448--8a2001c4c3c6c0709f96da74643b9cc8.nii.gz/MD5E-s24448--8a2001c4c3c6c0709f96da74643b9cc8.nii.gz

SWU_4/sub-0025742/ses-1/mri/aal3_sub-0025742_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025742/ses-1/mri/aal3_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/94/P2/MD5E-s179495--1c3c762e0cd07b908f6d632499755a94.nii.gz/MD5E-s179495--1c3c762e0cd07b908f6d632499755a94.nii.gz

SWU_4/sub-0025742/ses-1/mri/anatomy3_sub-0025742_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025742/ses-1/mri/anatomy3_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G3/62/MD5E-s128758--09edde19882b383132c30563ff352c25.nii.gz/MD5E-s128758--09edde19882b383132c30563ff352c25.nii.gz

SWU_4/sub-0025742/ses-1/mri/anon_misub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jF/42/MD5E-s8343062--d4054ad8e7165e45e64087eb55cb7e42.nii.gz/MD5E-s8343062--d4054ad8e7165e45e64087eb55cb7e42.nii.gz

SWU_4/sub-0025742/ses-1/mri/anon_msub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/K6/MD5E-s7802929--16b4b7342daae414b6cc1b10232fa456.nii.gz/MD5E-s7802929--16b4b7342daae414b6cc1b10232fa456.nii.gz

SWU_4/sub-0025742/ses-1/mri/cat_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f8/QG/MD5E-s95857--92428fc6b369f058a8cb7c1e576499ee.nii.gz/MD5E-s95857--92428fc6b369f058a8cb7c1e576499ee.nii.gz

SWU_4/sub-0025742/ses-1/mri/cobra_sub-0025742_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025742/ses-1/mri/cobra_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1F/V7/MD5E-s48506--fc77d6a16a3e6973d9cf5031b44db3c3.nii.gz/MD5E-s48506--fc77d6a16a3e6973d9cf5031b44db3c3.nii.gz

SWU_4/sub-0025742/ses-1/mri/hammers_sub-0025742_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025742/ses-1/mri/hammers_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/81/88/MD5E-s140594--4f9f4325c8c82c483fdaf4b42ffd6878.nii.gz/MD5E-s140594--4f9f4325c8c82c483fdaf4b42ffd6878.nii.gz

SWU_4/sub-0025742/ses-1/mri/ibsr_sub-0025742_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025742/ses-1/mri/ibsr_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v8/Wm/MD5E-s149841--b4ec059662f97eae9bfb41d8604b93da.nii.gz/MD5E-s149841--b4ec059662f97eae9bfb41d8604b93da.nii.gz

SWU_4/sub-0025742/ses-1/mri/it_sub-0025742_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vm/fv/MD5E-s284--311633ddb73f812a3b37ffc7287c6b22.mat/MD5E-s284--311633ddb73f812a3b37ffc7287c6b22.mat

SWU_4/sub-0025742/ses-1/mri/it_sub-0025742_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wZ/Qx/MD5E-s283--8329bacfee01762011b13539b6210542.mat/MD5E-s283--8329bacfee01762011b13539b6210542.mat

SWU_4/sub-0025742/ses-1/mri/iy_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/wZ/MD5E-s43025962--24ac055181b7de32ba507466b3ab76c1.nii.gz/MD5E-s43025962--24ac055181b7de32ba507466b3ab76c1.nii.gz

SWU_4/sub-0025742/ses-1/mri/julichbrain_sub-0025742_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025742/ses-1/mri/julichbrain_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vJ/v1/MD5E-s187857--9b2d983c9516cbc331c9871f05421fab.nii.gz/MD5E-s187857--9b2d983c9516cbc331c9871f05421fab.nii.gz

SWU_4/sub-0025742/ses-1/mri/lpba40_sub-0025742_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025742/ses-1/mri/lpba40_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025742/ses-1/mri/m0wp1sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/z5/MD5E-s2576155--715ae1f8da2ab99201b2cb5ebc5b35d6.nii.gz/MD5E-s2576155--715ae1f8da2ab99201b2cb5ebc5b35d6.nii.gz

SWU_4/sub-0025742/ses-1/mri/m0wp2sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1m/M5/MD5E-s2319930--747b8fac35055fd83331d659beaae3ef.nii.gz/MD5E-s2319930--747b8fac35055fd83331d659beaae3ef.nii.gz

SWU_4/sub-0025742/ses-1/mri/m0wp3sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QM/wq/MD5E-s2463751--95f48bebc45dabc33de0b24e23012149.nii.gz/MD5E-s2463751--95f48bebc45dabc33de0b24e23012149.nii.gz

SWU_4/sub-0025742/ses-1/mri/mori_sub-0025742_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025742/ses-1/mri/mori_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/4z/MD5E-s166152--527858a1e9ce8c11dbf6d57b558c9c4f.nii.gz/MD5E-s166152--527858a1e9ce8c11dbf6d57b558c9c4f.nii.gz

SWU_4/sub-0025742/ses-1/mri/mwp1sub-0025742_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Qg/mV/MD5E-s2585169--99837e7bffabfe9edce11b15a8690c43.nii.gz/MD5E-s2585169--99837e7bffabfe9edce11b15a8690c43.nii.gz

SWU_4/sub-0025742/ses-1/mri/mwp2sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kk/7W/MD5E-s2321222--c0dfb8e3585eb7bcc9acd557d058ed62.nii.gz/MD5E-s2321222--c0dfb8e3585eb7bcc9acd557d058ed62.nii.gz

SWU_4/sub-0025742/ses-1/mri/mwp3sub-0025742_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025742/ses-1/mri/neuromorphometrics_sub-0025742_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025742/ses-1/mri/neuromorphometrics_sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025742/ses-1/mri/p0sub-0025742_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x2/xX/MD5E-s594759--a37be199a79b37a47606356b27e24488.nii.gz/MD5E-s594759--a37be199a79b37a47606356b27e24488.nii.gz

SWU_4/sub-0025742/ses-1/mri/p1sub-0025742_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/MK/0M/MD5E-s631783--ebda2eb81f7c9756716b8ef86efe3cf9.nii.gz/MD5E-s631783--ebda2eb81f7c9756716b8ef86efe3cf9.nii.gz

SWU_4/sub-0025742/ses-1/mri/p2sub-0025742_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025742/ses-1/mri/p3sub-0025742_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025742/ses-1/mri/rp1sub-0025742_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025742/ses-1/mri/rp2sub-0025742_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025742/ses-1/mri/rp3sub-0025742_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025742/ses-1/mri/t_sub-0025742_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/33/zK/MD5E-s284--4ee877b370b9851f5e767091ac314c25.mat/MD5E-s284--4ee877b370b9851f5e767091ac314c25.mat

SWU_4/sub-0025742/ses-1/mri/t_sub-0025742_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025742/ses-1/mri/thalamus_sub-0025742_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025742/ses-1/mri/thalamus_sub-0025742_ses-1_run-1_T1w.nii.gz

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