[DATALAD RUNCMD] Compute BMB_1/sub-0003008/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BMB_1/sub-0003008/ses-1/anat/sub-0003008_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BMB_1/sub-0003008/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BMB_1/sub-0003008/ses-1/label/catROI_sub-0003008_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/ZX/MD5E-s57722--221a7ff1769521c80b87a0d0b0535c05.mat/MD5E-s57722--221a7ff1769521c80b87a0d0b0535c05.mat

BMB_1/sub-0003008/ses-1/label/catROI_sub-0003008_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fw/V4/MD5E-s188719--e1111d900f8e55cfd45588f59b491df2.xml/MD5E-s188719--e1111d900f8e55cfd45588f59b491df2.xml

BMB_1/sub-0003008/ses-1/label/catROIs_sub-0003008_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9W/11/MD5E-s120088--785e62c5d6955b1bdbda95c68612745a.mat/MD5E-s120088--785e62c5d6955b1bdbda95c68612745a.mat

BMB_1/sub-0003008/ses-1/label/catROIs_sub-0003008_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/32/vg/MD5E-s332091--fc7e9b4f1af82eb33bb429e7561acd85.xml/MD5E-s332091--fc7e9b4f1af82eb33bb429e7561acd85.xml

BMB_1/sub-0003008/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BMB_1/sub-0003008/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0p/PP/MD5E-s157809--e1e029759469dad5deae11794782b20c.nii.gz/MD5E-s157809--e1e029759469dad5deae11794782b20c.nii.gz

BMB_1/sub-0003008/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BMB_1/sub-0003008/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9Z/wV/MD5E-s175565--58306c900eb7e1bff6be73ce02bd3848.nii.gz/MD5E-s175565--58306c900eb7e1bff6be73ce02bd3848.nii.gz

BMB_1/sub-0003008/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BMB_1/sub-0003008/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/3F/MD5E-s238836--57201e347db35f3930172a223f9fdc23.nii.gz/MD5E-s238836--57201e347db35f3930172a223f9fdc23.nii.gz

BMB_1/sub-0003008/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BMB_1/sub-0003008/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/8Z/MD5E-s265592--ea284e787ce13a96d5dff7f9eb3a1b7b.nii.gz/MD5E-s265592--ea284e787ce13a96d5dff7f9eb3a1b7b.nii.gz

BMB_1/sub-0003008/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BMB_1/sub-0003008/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jP/f9/MD5E-s24126--1dce07eeb2ee22802a2e16915dcdae49.nii.gz/MD5E-s24126--1dce07eeb2ee22802a2e16915dcdae49.nii.gz

BMB_1/sub-0003008/ses-1/mri/aal3_sub-0003008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BMB_1/sub-0003008/ses-1/mri/aal3_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zk/gg/MD5E-s177560--6a351f2feb24ad9577cc1c7abebc93c8.nii.gz/MD5E-s177560--6a351f2feb24ad9577cc1c7abebc93c8.nii.gz

BMB_1/sub-0003008/ses-1/mri/anatomy3_sub-0003008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BMB_1/sub-0003008/ses-1/mri/anatomy3_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2K/1g/MD5E-s129910--06cd7381cc8655ad6a3756791fa6d807.nii.gz/MD5E-s129910--06cd7381cc8655ad6a3756791fa6d807.nii.gz

BMB_1/sub-0003008/ses-1/mri/anon_misub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pw/p1/MD5E-s4183319--fc3c53cc596f65753978b85848078f44.nii.gz/MD5E-s4183319--fc3c53cc596f65753978b85848078f44.nii.gz

BMB_1/sub-0003008/ses-1/mri/anon_msub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xp/XZ/MD5E-s10898204--9f915c78b29eb1d7c616c1b5142e6331.nii.gz/MD5E-s10898204--9f915c78b29eb1d7c616c1b5142e6331.nii.gz

BMB_1/sub-0003008/ses-1/mri/cat_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/87/63/MD5E-s94372--cbbea5433c59eefe4df7e45c832e4c1a.nii.gz/MD5E-s94372--cbbea5433c59eefe4df7e45c832e4c1a.nii.gz

BMB_1/sub-0003008/ses-1/mri/cobra_sub-0003008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BMB_1/sub-0003008/ses-1/mri/cobra_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vg/M9/MD5E-s45931--7b41b11ae6fd16fbf8981a246e1410b2.nii.gz/MD5E-s45931--7b41b11ae6fd16fbf8981a246e1410b2.nii.gz

BMB_1/sub-0003008/ses-1/mri/hammers_sub-0003008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BMB_1/sub-0003008/ses-1/mri/hammers_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w4/XX/MD5E-s138875--133cec794d109d641f0b6931c9058037.nii.gz/MD5E-s138875--133cec794d109d641f0b6931c9058037.nii.gz

BMB_1/sub-0003008/ses-1/mri/ibsr_sub-0003008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BMB_1/sub-0003008/ses-1/mri/ibsr_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Z/fm/MD5E-s147615--60906b75af70b9fd1bcaeeedd7ec87ff.nii.gz/MD5E-s147615--60906b75af70b9fd1bcaeeedd7ec87ff.nii.gz

BMB_1/sub-0003008/ses-1/mri/it_sub-0003008_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QP/kQ/MD5E-s283--4be5c56b5ebbc173b84012e9dd6373a2.mat/MD5E-s283--4be5c56b5ebbc173b84012e9dd6373a2.mat

BMB_1/sub-0003008/ses-1/mri/it_sub-0003008_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6V/Qj/MD5E-s284--33ee0fd1fb8ce53182af013b59b0c49c.mat/MD5E-s284--33ee0fd1fb8ce53182af013b59b0c49c.mat

BMB_1/sub-0003008/ses-1/mri/iy_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/jZ/MD5E-s43464364--99a3243d2e91d3382dc9baa28b210253.nii.gz/MD5E-s43464364--99a3243d2e91d3382dc9baa28b210253.nii.gz

BMB_1/sub-0003008/ses-1/mri/julichbrain_sub-0003008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BMB_1/sub-0003008/ses-1/mri/julichbrain_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gv/35/MD5E-s188478--95619a167219d404f78f856ad5ec0c18.nii.gz/MD5E-s188478--95619a167219d404f78f856ad5ec0c18.nii.gz

BMB_1/sub-0003008/ses-1/mri/lpba40_sub-0003008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BMB_1/sub-0003008/ses-1/mri/lpba40_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/4F/MD5E-s136184--d249c1f8637237b515260514931a677f.nii.gz/MD5E-s136184--d249c1f8637237b515260514931a677f.nii.gz

BMB_1/sub-0003008/ses-1/mri/m0wp1sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3m/8G/MD5E-s2570008--5dadf6288f4c052184db7f5cb74c22df.nii.gz/MD5E-s2570008--5dadf6288f4c052184db7f5cb74c22df.nii.gz

BMB_1/sub-0003008/ses-1/mri/m0wp2sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6X/Zm/MD5E-s2294472--dba32bb8cde7b6d836eba26e01ce033b.nii.gz/MD5E-s2294472--dba32bb8cde7b6d836eba26e01ce033b.nii.gz

BMB_1/sub-0003008/ses-1/mri/m0wp3sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8V/XV/MD5E-s2489114--49643dbf7955c0a80822f24a41056ab6.nii.gz/MD5E-s2489114--49643dbf7955c0a80822f24a41056ab6.nii.gz

BMB_1/sub-0003008/ses-1/mri/mori_sub-0003008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BMB_1/sub-0003008/ses-1/mri/mori_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v5/m3/MD5E-s164987--fc7cdd4b5bef81d4808ae423e34d62ed.nii.gz/MD5E-s164987--fc7cdd4b5bef81d4808ae423e34d62ed.nii.gz

BMB_1/sub-0003008/ses-1/mri/mwp1sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g7/xK/MD5E-s2577190--1c03770ab45bfdb232ce7f178162447d.nii.gz/MD5E-s2577190--1c03770ab45bfdb232ce7f178162447d.nii.gz

BMB_1/sub-0003008/ses-1/mri/mwp2sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pg/Vm/MD5E-s2294139--4258bdf060a8e02398e914b8604f1581.nii.gz/MD5E-s2294139--4258bdf060a8e02398e914b8604f1581.nii.gz

BMB_1/sub-0003008/ses-1/mri/mwp3sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X4/Fz/MD5E-s2485805--58f01c51277792524f3b7b50b62b9225.nii.gz/MD5E-s2485805--58f01c51277792524f3b7b50b62b9225.nii.gz

BMB_1/sub-0003008/ses-1/mri/neuromorphometrics_sub-0003008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BMB_1/sub-0003008/ses-1/mri/neuromorphometrics_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wz/M0/MD5E-s188559--892d9d884dc6798e66beab7e14bf9abb.nii.gz/MD5E-s188559--892d9d884dc6798e66beab7e14bf9abb.nii.gz

BMB_1/sub-0003008/ses-1/mri/p0sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gG/Zj/MD5E-s582252--4732a8444d51d295ada1cd1d1e071d6d.nii.gz/MD5E-s582252--4732a8444d51d295ada1cd1d1e071d6d.nii.gz

BMB_1/sub-0003008/ses-1/mri/p1sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fw/jj/MD5E-s617087--76d0cf3a0514515a30e7b4c948621810.nii.gz/MD5E-s617087--76d0cf3a0514515a30e7b4c948621810.nii.gz

BMB_1/sub-0003008/ses-1/mri/p2sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XW/vv/MD5E-s399465--260b031364cb778ee3358ba23e9545d3.nii.gz/MD5E-s399465--260b031364cb778ee3358ba23e9545d3.nii.gz

BMB_1/sub-0003008/ses-1/mri/p3sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/G9/MD5E-s357840--1dea3da4ed40727b0fe7fd94ee5e6327.nii.gz/MD5E-s357840--1dea3da4ed40727b0fe7fd94ee5e6327.nii.gz

BMB_1/sub-0003008/ses-1/mri/rp1sub-0003008_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xG/7G/MD5E-s441926--9719dac8726720a9045b2184cf1747b1.nii.gz/MD5E-s441926--9719dac8726720a9045b2184cf1747b1.nii.gz

BMB_1/sub-0003008/ses-1/mri/rp2sub-0003008_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gz/4m/MD5E-s298572--9e270cd04badfa27715ff519f517a2da.nii.gz/MD5E-s298572--9e270cd04badfa27715ff519f517a2da.nii.gz

BMB_1/sub-0003008/ses-1/mri/rp3sub-0003008_ses-1_run-1_T1w_affine.nii.gz

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BMB_1/sub-0003008/ses-1/mri/t_sub-0003008_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/36/W8/MD5E-s284--61bb9af44c73277c7f81e7d0b6efd019.mat/MD5E-s284--61bb9af44c73277c7f81e7d0b6efd019.mat

BMB_1/sub-0003008/ses-1/mri/t_sub-0003008_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/J5/MD5E-s284--8ba389a3ae40c3dc5dfb12da3280ccc1.mat/MD5E-s284--8ba389a3ae40c3dc5dfb12da3280ccc1.mat

BMB_1/sub-0003008/ses-1/mri/thalamus_sub-0003008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BMB_1/sub-0003008/ses-1/mri/thalamus_sub-0003008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3K/Zq/MD5E-s16112--9c9e1cc998264b6129e16f540710573e.nii.gz/MD5E-s16112--9c9e1cc998264b6129e16f540710573e.nii.gz

BMB_1/sub-0003008/ses-1/mri/wj_sub-0003008_ses-1_run-1_T1w.nii.gz

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