[DATALAD RUNCMD] Compute SWU_2/sub-0027199/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_2/sub-0027199/ses-1/anat/sub-0027199_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_2/sub-0027199/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_2/sub-0027199/ses-1/label/catROI_sub-0027199_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zZ/8v/MD5E-s58522--5017bc24218af6e49594c4874f5bb2c6.mat/MD5E-s58522--5017bc24218af6e49594c4874f5bb2c6.mat

SWU_2/sub-0027199/ses-1/label/catROI_sub-0027199_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/91/MD5E-s189144--d4fc83b0d5cf691edf15585186ac4253.xml/MD5E-s189144--d4fc83b0d5cf691edf15585186ac4253.xml

SWU_2/sub-0027199/ses-1/label/catROIs_sub-0027199_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M1/wQ/MD5E-s120129--6f6451d68edac5027d3addec12e9bd39.mat/MD5E-s120129--6f6451d68edac5027d3addec12e9bd39.mat

SWU_2/sub-0027199/ses-1/label/catROIs_sub-0027199_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/52/wJ/MD5E-s332214--29a26822d85cb7b6d2483456ca0800e6.xml/MD5E-s332214--29a26822d85cb7b6d2483456ca0800e6.xml

SWU_2/sub-0027199/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027199_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_2/sub-0027199/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q1/P0/MD5E-s167951--882f761585f7c874a828c18227d13e2c.nii.gz/MD5E-s167951--882f761585f7c874a828c18227d13e2c.nii.gz

SWU_2/sub-0027199/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027199_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_2/sub-0027199/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4w/mF/MD5E-s187068--c62185ed39af54e689b020926744efc2.nii.gz/MD5E-s187068--c62185ed39af54e689b020926744efc2.nii.gz

SWU_2/sub-0027199/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027199_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_2/sub-0027199/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pW/w9/MD5E-s252892--a0c9b1d37c48cb4e6f8c9e3ee1353f94.nii.gz/MD5E-s252892--a0c9b1d37c48cb4e6f8c9e3ee1353f94.nii.gz

SWU_2/sub-0027199/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027199_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_2/sub-0027199/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3q/gW/MD5E-s280219--e96f5c349440cdc1f9dcc667c32c5095.nii.gz/MD5E-s280219--e96f5c349440cdc1f9dcc667c32c5095.nii.gz

SWU_2/sub-0027199/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027199_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_2/sub-0027199/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f2/8F/MD5E-s25736--3c3ba670c5da98e2b993179b44169c27.nii.gz/MD5E-s25736--3c3ba670c5da98e2b993179b44169c27.nii.gz

SWU_2/sub-0027199/ses-1/mri/aal3_sub-0027199_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_2/sub-0027199/ses-1/mri/aal3_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xk/Xx/MD5E-s190373--51118eee5f4bdebc5380f4053083e9f0.nii.gz/MD5E-s190373--51118eee5f4bdebc5380f4053083e9f0.nii.gz

SWU_2/sub-0027199/ses-1/mri/anatomy3_sub-0027199_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_2/sub-0027199/ses-1/mri/anatomy3_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/Fp/MD5E-s136321--c19612f09f01749871d5955417bfc9e2.nii.gz/MD5E-s136321--c19612f09f01749871d5955417bfc9e2.nii.gz

SWU_2/sub-0027199/ses-1/mri/anon_misub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6x/2w/MD5E-s10947608--a2fb8b9d88e22aa63a011c25b3ecb3ee.nii.gz/MD5E-s10947608--a2fb8b9d88e22aa63a011c25b3ecb3ee.nii.gz

SWU_2/sub-0027199/ses-1/mri/anon_msub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9m/Xp/MD5E-s11956344--0395c91f332d43f303c4b0fc62b54826.nii.gz/MD5E-s11956344--0395c91f332d43f303c4b0fc62b54826.nii.gz

SWU_2/sub-0027199/ses-1/mri/cat_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5F/xk/MD5E-s107185--cb8b603e86c4e9ddb59e8b4b40ad8492.nii.gz/MD5E-s107185--cb8b603e86c4e9ddb59e8b4b40ad8492.nii.gz

SWU_2/sub-0027199/ses-1/mri/cobra_sub-0027199_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_2/sub-0027199/ses-1/mri/cobra_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g8/Fz/MD5E-s50617--e085206d4f8dd6050ad8b9bab17d6499.nii.gz/MD5E-s50617--e085206d4f8dd6050ad8b9bab17d6499.nii.gz

SWU_2/sub-0027199/ses-1/mri/hammers_sub-0027199_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_2/sub-0027199/ses-1/mri/hammers_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vP/zq/MD5E-s151416--6336fddef1bbf0e8f9a5dead3f0b7ad2.nii.gz/MD5E-s151416--6336fddef1bbf0e8f9a5dead3f0b7ad2.nii.gz

SWU_2/sub-0027199/ses-1/mri/ibsr_sub-0027199_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_2/sub-0027199/ses-1/mri/ibsr_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WK/3J/MD5E-s158858--f483d91b0e0b0cc396209dada44aa29e.nii.gz/MD5E-s158858--f483d91b0e0b0cc396209dada44aa29e.nii.gz

SWU_2/sub-0027199/ses-1/mri/it_sub-0027199_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w5/Xw/MD5E-s282--1a5d9083414a728713dd37706cc21f23.mat/MD5E-s282--1a5d9083414a728713dd37706cc21f23.mat

SWU_2/sub-0027199/ses-1/mri/it_sub-0027199_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JP/WM/MD5E-s283--d2186dde1d9e82024547087f61d9993e.mat/MD5E-s283--d2186dde1d9e82024547087f61d9993e.mat

SWU_2/sub-0027199/ses-1/mri/iy_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GP/qX/MD5E-s47585867--2b238995374cf4fe9cd5898217e86d11.nii.gz/MD5E-s47585867--2b238995374cf4fe9cd5898217e86d11.nii.gz

SWU_2/sub-0027199/ses-1/mri/julichbrain_sub-0027199_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_2/sub-0027199/ses-1/mri/julichbrain_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p6/MZ/MD5E-s200958--cfe67c17db4552a6b9ecdd72d195cad9.nii.gz/MD5E-s200958--cfe67c17db4552a6b9ecdd72d195cad9.nii.gz

SWU_2/sub-0027199/ses-1/mri/lpba40_sub-0027199_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_2/sub-0027199/ses-1/mri/lpba40_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zv/90/MD5E-s146521--c9bf8dc08136092000e8dd386ca13849.nii.gz/MD5E-s146521--c9bf8dc08136092000e8dd386ca13849.nii.gz

SWU_2/sub-0027199/ses-1/mri/m0wp1sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027199/ses-1/mri/m0wp2sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W3/KM/MD5E-s2306188--361f8b8380d803c0f03f30facca08de4.nii.gz/MD5E-s2306188--361f8b8380d803c0f03f30facca08de4.nii.gz

SWU_2/sub-0027199/ses-1/mri/m0wp3sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027199/ses-1/mri/mori_sub-0027199_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_2/sub-0027199/ses-1/mri/mori_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027199/ses-1/mri/mwp1sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/jQ/MD5E-s2582383--b912c9e7326f78ac73e6f015c61377f3.nii.gz/MD5E-s2582383--b912c9e7326f78ac73e6f015c61377f3.nii.gz

SWU_2/sub-0027199/ses-1/mri/mwp2sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027199/ses-1/mri/mwp3sub-0027199_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027199/ses-1/mri/neuromorphometrics_sub-0027199_ses-1_run-1_T1w.csv

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SWU_2/sub-0027199/ses-1/mri/neuromorphometrics_sub-0027199_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027199/ses-1/mri/p0sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027199/ses-1/mri/p1sub-0027199_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027199/ses-1/mri/p2sub-0027199_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027199/ses-1/mri/p3sub-0027199_ses-1_run-1_T1w.nii.gz

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SWU_2/sub-0027199/ses-1/mri/rp1sub-0027199_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027199/ses-1/mri/rp2sub-0027199_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027199/ses-1/mri/rp3sub-0027199_ses-1_run-1_T1w_affine.nii.gz

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SWU_2/sub-0027199/ses-1/mri/t_sub-0027199_ses-1_run-1_T1w_affine_reorient.mat

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SWU_2/sub-0027199/ses-1/mri/t_sub-0027199_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_2/sub-0027199/ses-1/mri/thalamus_sub-0027199_ses-1_run-1_T1w.csv

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SWU_2/sub-0027199/ses-1/mri/thalamus_sub-0027199_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_2/sub-0027199/ses-1/mri/wj_sub-0027199_ses-1_run-1_T1w.nii.gz

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