[DATALAD RUNCMD] Compute IPCAS_7/sub-0026091/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_7/sub-0026091/ses-1/anat/sub-0026091_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_7/sub-0026091/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_7/sub-0026091/ses-1/label/catROI_sub-0026091_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fF/MP/MD5E-s61309--d98e75ac56462262f956596b3fa518b0.mat/MD5E-s61309--d98e75ac56462262f956596b3fa518b0.mat

IPCAS_7/sub-0026091/ses-1/label/catROI_sub-0026091_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vM/j5/MD5E-s189108--187bfae17d05d3904c24aa44926f8a63.xml/MD5E-s189108--187bfae17d05d3904c24aa44926f8a63.xml

IPCAS_7/sub-0026091/ses-1/label/catROIs_sub-0026091_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ff/pv/MD5E-s120184--36a9c8ee4140089295b810ab4e742b13.mat/MD5E-s120184--36a9c8ee4140089295b810ab4e742b13.mat

IPCAS_7/sub-0026091/ses-1/label/catROIs_sub-0026091_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gq/zP/MD5E-s332088--7a1f73d655d4386eebed3667b63689a6.xml/MD5E-s332088--7a1f73d655d4386eebed3667b63689a6.xml

IPCAS_7/sub-0026091/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026091_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_7/sub-0026091/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026091_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_7/sub-0026091/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026091_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_7/sub-0026091/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026091_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_7/sub-0026091/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026091_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_7/sub-0026091/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026091_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zM/PV/MD5E-s236289--9ab2afd6e99e4c0a9c1fe8479cf38107.nii.gz/MD5E-s236289--9ab2afd6e99e4c0a9c1fe8479cf38107.nii.gz

IPCAS_7/sub-0026091/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026091_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_7/sub-0026091/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026091_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xj/wJ/MD5E-s263253--22bc6141cc8f74b356e99b1808424254.nii.gz/MD5E-s263253--22bc6141cc8f74b356e99b1808424254.nii.gz

IPCAS_7/sub-0026091/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026091_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_7/sub-0026091/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026091_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/jF/qX/MD5E-s23812--2d9ec3f9e8f2b01342fd910cdb2efa6b.nii.gz/MD5E-s23812--2d9ec3f9e8f2b01342fd910cdb2efa6b.nii.gz

IPCAS_7/sub-0026091/ses-1/mri/aal3_sub-0026091_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_7/sub-0026091/ses-1/mri/aal3_sub-0026091_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_7/sub-0026091/ses-1/mri/anatomy3_sub-0026091_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_7/sub-0026091/ses-1/mri/anatomy3_sub-0026091_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/32/K9/MD5E-s128351--1ad9d0d667d1c6d43b3f2c4c8dbc51eb.nii.gz/MD5E-s128351--1ad9d0d667d1c6d43b3f2c4c8dbc51eb.nii.gz

IPCAS_7/sub-0026091/ses-1/mri/anon_misub-0026091_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zv/mV/MD5E-s4486787--5709a37dfe1500763770f5aa9cdd4b16.nii.gz/MD5E-s4486787--5709a37dfe1500763770f5aa9cdd4b16.nii.gz

IPCAS_7/sub-0026091/ses-1/mri/anon_msub-0026091_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/fg/pz/MD5E-s10661020--9acf0f6665e779075dba56433271b040.nii.gz/MD5E-s10661020--9acf0f6665e779075dba56433271b040.nii.gz

IPCAS_7/sub-0026091/ses-1/mri/cat_sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/cobra_sub-0026091_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_7/sub-0026091/ses-1/mri/cobra_sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/hammers_sub-0026091_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_7/sub-0026091/ses-1/mri/hammers_sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/ibsr_sub-0026091_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_7/sub-0026091/ses-1/mri/ibsr_sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/it_sub-0026091_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_7/sub-0026091/ses-1/mri/it_sub-0026091_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_7/sub-0026091/ses-1/mri/iy_sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/julichbrain_sub-0026091_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026091/ses-1/mri/julichbrain_sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/lpba40_sub-0026091_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026091/ses-1/mri/lpba40_sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/m0wp1sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/m0wp2sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/m0wp3sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/mori_sub-0026091_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026091/ses-1/mri/mori_sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/mwp1sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/mwp2sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/mwp3sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/neuromorphometrics_sub-0026091_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026091/ses-1/mri/neuromorphometrics_sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/p0sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/p1sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/p2sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/p3sub-0026091_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/rp1sub-0026091_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/rp2sub-0026091_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/rp3sub-0026091_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026091/ses-1/mri/t_sub-0026091_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_7/sub-0026091/ses-1/mri/t_sub-0026091_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_7/sub-0026091/ses-1/mri/thalamus_sub-0026091_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026091/ses-1/mri/thalamus_sub-0026091_ses-1_run-1_T1w.nii.gz

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