[DATALAD RUNCMD] Compute NYU_2/sub-0025136/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025136/ses-1/anat/sub-0025136_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025136/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025136/ses-1/label/catROI_sub-0025136_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F1/kv/MD5E-s58042--a7ebf3ff9360716a71ae586356ad8e3c.mat/MD5E-s58042--a7ebf3ff9360716a71ae586356ad8e3c.mat

NYU_2/sub-0025136/ses-1/label/catROI_sub-0025136_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QZ/vv/MD5E-s189144--a5e76e6f98e5c2fb98efadee54e45f84.xml/MD5E-s189144--a5e76e6f98e5c2fb98efadee54e45f84.xml

NYU_2/sub-0025136/ses-1/label/catROI_sub-0025136_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Mm/6z/MD5E-s58127--f8d38de3f23955ee439a00e683f57279.mat/MD5E-s58127--f8d38de3f23955ee439a00e683f57279.mat

NYU_2/sub-0025136/ses-1/label/catROI_sub-0025136_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qV/Gw/MD5E-s189052--e144ed036ee3225a50331cb06d7b3c25.xml/MD5E-s189052--e144ed036ee3225a50331cb06d7b3c25.xml

NYU_2/sub-0025136/ses-1/label/catROIs_sub-0025136_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6K/Ww/MD5E-s120128--f78730a7b98dfdea66a8e782d22e60e1.mat/MD5E-s120128--f78730a7b98dfdea66a8e782d22e60e1.mat

NYU_2/sub-0025136/ses-1/label/catROIs_sub-0025136_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V6/Q9/MD5E-s332096--f4b479af40e781b48763c8aaa873c0be.xml/MD5E-s332096--f4b479af40e781b48763c8aaa873c0be.xml

NYU_2/sub-0025136/ses-1/label/catROIs_sub-0025136_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/MJ/0M/MD5E-s120103--58c0f38540188f194672ff9f24b7a801.mat/MD5E-s120103--58c0f38540188f194672ff9f24b7a801.mat

NYU_2/sub-0025136/ses-1/label/catROIs_sub-0025136_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kf/23/MD5E-s332133--56bad2f49438ed0c06fdc4334b4eafb7.xml/MD5E-s332133--56bad2f49438ed0c06fdc4334b4eafb7.xml

NYU_2/sub-0025136/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025136_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V5/4j/MD5E-s145211--30200c00305464dc147aa7f9636f12d5.nii.gz/MD5E-s145211--30200c00305464dc147aa7f9636f12d5.nii.gz

NYU_2/sub-0025136/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025136_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0M/VZ/MD5E-s145521--c7a1f1a68864342d998f168000c2c85f.nii.gz/MD5E-s145521--c7a1f1a68864342d998f168000c2c85f.nii.gz

NYU_2/sub-0025136/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025136_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fx/6P/MD5E-s162873--55164fcd6288cf778ced331b91a51b44.nii.gz/MD5E-s162873--55164fcd6288cf778ced331b91a51b44.nii.gz

NYU_2/sub-0025136/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025136_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/1V/pq/MD5E-s163090--d626b308ff93497fceed03789829930c.nii.gz/MD5E-s163090--d626b308ff93497fceed03789829930c.nii.gz

NYU_2/sub-0025136/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025136_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2k/QQ/MD5E-s219486--7249643b3b69c301351fa42870140eae.nii.gz/MD5E-s219486--7249643b3b69c301351fa42870140eae.nii.gz

NYU_2/sub-0025136/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025136_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Qp/zM/MD5E-s219690--7783c6e30d89e9f3a446598936a5bf9c.nii.gz/MD5E-s219690--7783c6e30d89e9f3a446598936a5bf9c.nii.gz

NYU_2/sub-0025136/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025136_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F0/jK/MD5E-s243482--4aec448d224e41f4cd3747420805a923.nii.gz/MD5E-s243482--4aec448d224e41f4cd3747420805a923.nii.gz

NYU_2/sub-0025136/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025136_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/jk/V4/MD5E-s243306--75597a5f0f4d2f6f9971a802cddd0ae0.nii.gz/MD5E-s243306--75597a5f0f4d2f6f9971a802cddd0ae0.nii.gz

NYU_2/sub-0025136/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025136_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F0/P2/MD5E-s19466--f59860487735882807a613dc2da43a5b.nii.gz/MD5E-s19466--f59860487735882807a613dc2da43a5b.nii.gz

NYU_2/sub-0025136/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025136_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6J/XW/MD5E-s19515--0843ff3f75d3cc18c63d45592fb96f38.nii.gz/MD5E-s19515--0843ff3f75d3cc18c63d45592fb96f38.nii.gz

NYU_2/sub-0025136/ses-1/mri/aal3_sub-0025136_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j5/z5/MD5E-s166995--4b5e4698d15a1d3af68d3fcf09f78584.nii.gz/MD5E-s166995--4b5e4698d15a1d3af68d3fcf09f78584.nii.gz

NYU_2/sub-0025136/ses-1/mri/aal3_sub-0025136_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6v/Fv/MD5E-s167215--4f0f473e78b0bd5d5564bef238aedece.nii.gz/MD5E-s167215--4f0f473e78b0bd5d5564bef238aedece.nii.gz

NYU_2/sub-0025136/ses-1/mri/anatomy3_sub-0025136_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qp/QP/MD5E-s114346--c43f7355d460df3730971a4700d619ac.nii.gz/MD5E-s114346--c43f7355d460df3730971a4700d619ac.nii.gz

NYU_2/sub-0025136/ses-1/mri/anatomy3_sub-0025136_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8V/Gx/MD5E-s114423--3c409f480abca4435e012561eb48aa24.nii.gz/MD5E-s114423--3c409f480abca4435e012561eb48aa24.nii.gz

NYU_2/sub-0025136/ses-1/mri/anon_misub-0025136_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/fF/MD5E-s4411626--52c0689bf887e44692586f709199e1dc.nii.gz/MD5E-s4411626--52c0689bf887e44692586f709199e1dc.nii.gz

NYU_2/sub-0025136/ses-1/mri/anon_misub-0025136_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Gf/mv/MD5E-s4469179--d7704986c1b2eff792df185cf86df339.nii.gz/MD5E-s4469179--d7704986c1b2eff792df185cf86df339.nii.gz

NYU_2/sub-0025136/ses-1/mri/anon_msub-0025136_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/q1/6z/MD5E-s9334098--2d5781a6c78d149c2053b18983c4a440.nii.gz/MD5E-s9334098--2d5781a6c78d149c2053b18983c4a440.nii.gz

NYU_2/sub-0025136/ses-1/mri/anon_msub-0025136_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/XW/Kw/MD5E-s9189423--cb9707bb19e1b76fc11fdfdd09ea777c.nii.gz/MD5E-s9189423--cb9707bb19e1b76fc11fdfdd09ea777c.nii.gz

NYU_2/sub-0025136/ses-1/mri/cat_sub-0025136_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mQ/GP/MD5E-s91214--3f430d564fa0d3ed53ee84649e878fce.nii.gz/MD5E-s91214--3f430d564fa0d3ed53ee84649e878fce.nii.gz

NYU_2/sub-0025136/ses-1/mri/cat_sub-0025136_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5G/8Q/MD5E-s87795--02d75ec13cfd28d327f73c46a112b7ca.nii.gz/MD5E-s87795--02d75ec13cfd28d327f73c46a112b7ca.nii.gz

NYU_2/sub-0025136/ses-1/mri/cobra_sub-0025136_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8G/mW/MD5E-s39213--f5418e82901d8f0966a482da97e18115.nii.gz/MD5E-s39213--f5418e82901d8f0966a482da97e18115.nii.gz

NYU_2/sub-0025136/ses-1/mri/cobra_sub-0025136_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4V/7Q/MD5E-s39445--e3dbbd33bb5b57a3019cebb0f6161e20.nii.gz/MD5E-s39445--e3dbbd33bb5b57a3019cebb0f6161e20.nii.gz

NYU_2/sub-0025136/ses-1/mri/hammers_sub-0025136_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q4/kx/MD5E-s126280--779b7c3411466bb67f13accc23f29d5e.nii.gz/MD5E-s126280--779b7c3411466bb67f13accc23f29d5e.nii.gz

NYU_2/sub-0025136/ses-1/mri/hammers_sub-0025136_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025136/ses-1/mri/ibsr_sub-0025136_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p6/J0/MD5E-s135318--d103d3be23e477a9a1afd6cd7bb7ff56.nii.gz/MD5E-s135318--d103d3be23e477a9a1afd6cd7bb7ff56.nii.gz

NYU_2/sub-0025136/ses-1/mri/ibsr_sub-0025136_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025136/ses-1/mri/it_sub-0025136_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xX/ZG/MD5E-s283--e5a15f50821bb081b4f27b090a3a2071.mat/MD5E-s283--e5a15f50821bb081b4f27b090a3a2071.mat

NYU_2/sub-0025136/ses-1/mri/it_sub-0025136_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W7/PQ/MD5E-s282--e01bc30fd8a5323a0c55d0dd8f8b1851.mat/MD5E-s282--e01bc30fd8a5323a0c55d0dd8f8b1851.mat

NYU_2/sub-0025136/ses-1/mri/it_sub-0025136_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/k9/j2/MD5E-s282--9b31ef78c9e25778f8e6b3e88d798c53.mat/MD5E-s282--9b31ef78c9e25778f8e6b3e88d798c53.mat

NYU_2/sub-0025136/ses-1/mri/it_sub-0025136_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025136/ses-1/mri/iy_sub-0025136_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025136/ses-1/mri/iy_sub-0025136_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025136/ses-1/mri/julichbrain_sub-0025136_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025136/ses-1/mri/julichbrain_sub-0025136_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025136/ses-1/mri/lpba40_sub-0025136_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025136/ses-1/mri/lpba40_sub-0025136_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025136/ses-1/mri/m0wp1sub-0025136_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025136/ses-1/mri/m0wp1sub-0025136_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025136/ses-1/mri/m0wp2sub-0025136_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025136/ses-1/mri/m0wp2sub-0025136_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025136/ses-1/mri/m0wp3sub-0025136_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025136/ses-1/mri/m0wp3sub-0025136_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025136/ses-1/mri/mori_sub-0025136_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025136/ses-1/mri/mori_sub-0025136_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025136/ses-1/mri/mwp1sub-0025136_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025136/ses-1/mri/mwp1sub-0025136_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025136/ses-1/mri/mwp2sub-0025136_ses-1_run-1_T1w.nii.gz

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