[DATALAD RUNCMD] Compute SWU_4/sub-0025703/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025703/ses-1/anat/sub-0025703_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025703/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025703/ses-1/label/catROI_sub-0025703_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GV/Vz/MD5E-s61358--24610314460d3621a5dfe189ad9d0bfa.mat/MD5E-s61358--24610314460d3621a5dfe189ad9d0bfa.mat

SWU_4/sub-0025703/ses-1/label/catROI_sub-0025703_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VG/5J/MD5E-s188853--95414d2a223195579a549939e0fe6603.xml/MD5E-s188853--95414d2a223195579a549939e0fe6603.xml

SWU_4/sub-0025703/ses-1/label/catROIs_sub-0025703_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9v/Pp/MD5E-s120045--b47ce61d783d44265c03e1df9a03ef25.mat/MD5E-s120045--b47ce61d783d44265c03e1df9a03ef25.mat

SWU_4/sub-0025703/ses-1/label/catROIs_sub-0025703_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j4/JJ/MD5E-s332084--0f267efd932bcaeed4ae14da08db7ffd.xml/MD5E-s332084--0f267efd932bcaeed4ae14da08db7ffd.xml

SWU_4/sub-0025703/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025703_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025703/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wm/z8/MD5E-s175055--40fd085809abb988f4d47165309a88ac.nii.gz/MD5E-s175055--40fd085809abb988f4d47165309a88ac.nii.gz

SWU_4/sub-0025703/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025703_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025703/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5M/pM/MD5E-s195332--df6ae83e7bbba2eda8b3e0fb916cfbeb.nii.gz/MD5E-s195332--df6ae83e7bbba2eda8b3e0fb916cfbeb.nii.gz

SWU_4/sub-0025703/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025703_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025703/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vZ/4z/MD5E-s263498--d2cd3f47708b42e07d4c651cc188ed10.nii.gz/MD5E-s263498--d2cd3f47708b42e07d4c651cc188ed10.nii.gz

SWU_4/sub-0025703/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025703_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025703/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5p/vv/MD5E-s292364--63cf5889e59fb891d50465e90bcb487c.nii.gz/MD5E-s292364--63cf5889e59fb891d50465e90bcb487c.nii.gz

SWU_4/sub-0025703/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025703_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025703/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7V/94/MD5E-s25915--26c01a7bf335c81d3862c3f186934aa3.nii.gz/MD5E-s25915--26c01a7bf335c81d3862c3f186934aa3.nii.gz

SWU_4/sub-0025703/ses-1/mri/aal3_sub-0025703_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025703/ses-1/mri/aal3_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5X/QG/MD5E-s199610--43eec47fc5fd841b5b99335c9a8d71b6.nii.gz/MD5E-s199610--43eec47fc5fd841b5b99335c9a8d71b6.nii.gz

SWU_4/sub-0025703/ses-1/mri/anatomy3_sub-0025703_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025703/ses-1/mri/anatomy3_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QP/Kg/MD5E-s144271--e1ebbb34dc22c47f4ca1db8796675883.nii.gz/MD5E-s144271--e1ebbb34dc22c47f4ca1db8796675883.nii.gz

SWU_4/sub-0025703/ses-1/mri/anon_misub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/G3/MD5E-s9369784--ae07ffd58ea19ec73404f18d4c0d024d.nii.gz/MD5E-s9369784--ae07ffd58ea19ec73404f18d4c0d024d.nii.gz

SWU_4/sub-0025703/ses-1/mri/anon_msub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8p/Zj/MD5E-s9035448--fed3c245d2c520d8883f862acaba6d76.nii.gz/MD5E-s9035448--fed3c245d2c520d8883f862acaba6d76.nii.gz

SWU_4/sub-0025703/ses-1/mri/cat_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QK/G8/MD5E-s105823--42053cd5a200ba1a280eede0e9573a57.nii.gz/MD5E-s105823--42053cd5a200ba1a280eede0e9573a57.nii.gz

SWU_4/sub-0025703/ses-1/mri/cobra_sub-0025703_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025703/ses-1/mri/cobra_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8g/P2/MD5E-s53071--62771fa6c536b5305a21fe9227eff7bb.nii.gz/MD5E-s53071--62771fa6c536b5305a21fe9227eff7bb.nii.gz

SWU_4/sub-0025703/ses-1/mri/hammers_sub-0025703_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025703/ses-1/mri/hammers_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QG/3J/MD5E-s156087--16b93cc46742a3220582cb36f05a1a55.nii.gz/MD5E-s156087--16b93cc46742a3220582cb36f05a1a55.nii.gz

SWU_4/sub-0025703/ses-1/mri/ibsr_sub-0025703_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025703/ses-1/mri/ibsr_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/wf/MD5E-s165636--69279ecf6775d34ad1895869c3da431c.nii.gz/MD5E-s165636--69279ecf6775d34ad1895869c3da431c.nii.gz

SWU_4/sub-0025703/ses-1/mri/it_sub-0025703_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gf/1g/MD5E-s283--d08262cf31c41bf8ea61bb7083d26a69.mat/MD5E-s283--d08262cf31c41bf8ea61bb7083d26a69.mat

SWU_4/sub-0025703/ses-1/mri/it_sub-0025703_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jQ/QF/MD5E-s283--ba121c05c3172708f6e52f967a9a0ec9.mat/MD5E-s283--ba121c05c3172708f6e52f967a9a0ec9.mat

SWU_4/sub-0025703/ses-1/mri/iy_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Z/Wp/MD5E-s49537590--4068d194885b3edac2a635b31ded9e9f.nii.gz/MD5E-s49537590--4068d194885b3edac2a635b31ded9e9f.nii.gz

SWU_4/sub-0025703/ses-1/mri/julichbrain_sub-0025703_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025703/ses-1/mri/julichbrain_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3P/Xz/MD5E-s211270--cba0d904e495ad6a3bedbc2aa2222df5.nii.gz/MD5E-s211270--cba0d904e495ad6a3bedbc2aa2222df5.nii.gz

SWU_4/sub-0025703/ses-1/mri/lpba40_sub-0025703_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025703/ses-1/mri/lpba40_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fz/6M/MD5E-s152621--6153abb09dd690f25be6fa0ef450402e.nii.gz/MD5E-s152621--6153abb09dd690f25be6fa0ef450402e.nii.gz

SWU_4/sub-0025703/ses-1/mri/m0wp1sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wK/xF/MD5E-s2585329--025bb97dc4bd2220347073af72e5076b.nii.gz/MD5E-s2585329--025bb97dc4bd2220347073af72e5076b.nii.gz

SWU_4/sub-0025703/ses-1/mri/m0wp2sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x1/Fj/MD5E-s2340502--5f4f810409c03aac008bf5041f4000fc.nii.gz/MD5E-s2340502--5f4f810409c03aac008bf5041f4000fc.nii.gz

SWU_4/sub-0025703/ses-1/mri/m0wp3sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m6/fG/MD5E-s2512008--7d439755001277b1b871dc2e697b9f87.nii.gz/MD5E-s2512008--7d439755001277b1b871dc2e697b9f87.nii.gz

SWU_4/sub-0025703/ses-1/mri/mori_sub-0025703_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025703/ses-1/mri/mori_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jg/FF/MD5E-s184641--62250fff8dca049e0ce25aab938b9a64.nii.gz/MD5E-s184641--62250fff8dca049e0ce25aab938b9a64.nii.gz

SWU_4/sub-0025703/ses-1/mri/mwp1sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1g/g3/MD5E-s2586771--523fb6bb344aef27392ba3679efc5193.nii.gz/MD5E-s2586771--523fb6bb344aef27392ba3679efc5193.nii.gz

SWU_4/sub-0025703/ses-1/mri/mwp2sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/qz/MD5E-s2336713--896cf9c530ecb9ff5d458618ba2c906f.nii.gz/MD5E-s2336713--896cf9c530ecb9ff5d458618ba2c906f.nii.gz

SWU_4/sub-0025703/ses-1/mri/mwp3sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/Gz/MD5E-s2509877--63d580453e0d4678b2dce7fa4ad13b59.nii.gz/MD5E-s2509877--63d580453e0d4678b2dce7fa4ad13b59.nii.gz

SWU_4/sub-0025703/ses-1/mri/neuromorphometrics_sub-0025703_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025703/ses-1/mri/neuromorphometrics_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/mw/MD5E-s213285--c117a0e0f154ef0cd6560236fcde3056.nii.gz/MD5E-s213285--c117a0e0f154ef0cd6560236fcde3056.nii.gz

SWU_4/sub-0025703/ses-1/mri/p0sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q4/X7/MD5E-s704613--0eb99afbb4b27132b7e47c680663f4f8.nii.gz/MD5E-s704613--0eb99afbb4b27132b7e47c680663f4f8.nii.gz

SWU_4/sub-0025703/ses-1/mri/p1sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2W/99/MD5E-s751786--db70b99dd116173501acead26a912774.nii.gz/MD5E-s751786--db70b99dd116173501acead26a912774.nii.gz

SWU_4/sub-0025703/ses-1/mri/p2sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mg/54/MD5E-s505275--7425526454920a0b8f36d13739ec39a1.nii.gz/MD5E-s505275--7425526454920a0b8f36d13739ec39a1.nii.gz

SWU_4/sub-0025703/ses-1/mri/p3sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9x/75/MD5E-s410095--9437f8826134cc39891fe04d76e9f3a6.nii.gz/MD5E-s410095--9437f8826134cc39891fe04d76e9f3a6.nii.gz

SWU_4/sub-0025703/ses-1/mri/rp1sub-0025703_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZX/6f/MD5E-s461818--4573323dcc8b458fa0663aebea824201.nii.gz/MD5E-s461818--4573323dcc8b458fa0663aebea824201.nii.gz

SWU_4/sub-0025703/ses-1/mri/rp2sub-0025703_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z7/J2/MD5E-s323004--98a6eebfa9b8c8fa10c888ad44afe650.nii.gz/MD5E-s323004--98a6eebfa9b8c8fa10c888ad44afe650.nii.gz

SWU_4/sub-0025703/ses-1/mri/rp3sub-0025703_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025703/ses-1/mri/t_sub-0025703_ses-1_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025703/ses-1/mri/t_sub-0025703_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/54/9Q/MD5E-s283--2c9c1a808639d3731f733da42bfff4a7.mat/MD5E-s283--2c9c1a808639d3731f733da42bfff4a7.mat

SWU_4/sub-0025703/ses-1/mri/thalamus_sub-0025703_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025703/ses-1/mri/thalamus_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025703/ses-1/mri/wj_sub-0025703_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x0/7q/MD5E-s5478547--c32e7774105e4a7835b5610a921dfe04.nii.gz/MD5E-s5478547--c32e7774105e4a7835b5610a921dfe04.nii.gz

SWU_4/sub-0025703/ses-1/mri/wmisub-0025703_ses-1_run-1_T1w.nii.gz

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