[DATALAD RUNCMD] Compute BNU_2/sub-0025928/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025928/ses-2/anat/sub-0025928_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025928/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025928/ses-2/label/catROI_sub-0025928_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/1Z/MD5E-s58075--7d3eb32a745196caeb0f148c8364a48b.mat/MD5E-s58075--7d3eb32a745196caeb0f148c8364a48b.mat

BNU_2/sub-0025928/ses-2/label/catROI_sub-0025928_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/81/V1/MD5E-s188372--4723f9c2ad23e46b5142eec93174ff0a.xml/MD5E-s188372--4723f9c2ad23e46b5142eec93174ff0a.xml

BNU_2/sub-0025928/ses-2/label/catROIs_sub-0025928_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gV/4g/MD5E-s119955--6bcb669468724095077c9a3a1ab48d9b.mat/MD5E-s119955--6bcb669468724095077c9a3a1ab48d9b.mat

BNU_2/sub-0025928/ses-2/label/catROIs_sub-0025928_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W0/9q/MD5E-s332162--8c5d585b9e06cb45a5ed50fb7526f8f1.xml/MD5E-s332162--8c5d585b9e06cb45a5ed50fb7526f8f1.xml

BNU_2/sub-0025928/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025928_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025928/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P5/P7/MD5E-s183264--97aa59381bdb746d590f0966f5a9c4ec.nii.gz/MD5E-s183264--97aa59381bdb746d590f0966f5a9c4ec.nii.gz

BNU_2/sub-0025928/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025928_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025928/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jJ/F3/MD5E-s206850--80c47beb5ed960476d3965f0ede8b4f4.nii.gz/MD5E-s206850--80c47beb5ed960476d3965f0ede8b4f4.nii.gz

BNU_2/sub-0025928/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025928_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025928/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2x/fK/MD5E-s276807--6b507967b43b90ec23fb1ba1ef3f47bc.nii.gz/MD5E-s276807--6b507967b43b90ec23fb1ba1ef3f47bc.nii.gz

BNU_2/sub-0025928/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025928_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025928/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/58/5k/MD5E-s308462--335b95d07b1e0687b580baa47c2d0a17.nii.gz/MD5E-s308462--335b95d07b1e0687b580baa47c2d0a17.nii.gz

BNU_2/sub-0025928/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025928_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025928/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wg/F3/MD5E-s25299--d2117e4b829fca72969f7228e3f1ae1a.nii.gz/MD5E-s25299--d2117e4b829fca72969f7228e3f1ae1a.nii.gz

BNU_2/sub-0025928/ses-2/mri/aal3_sub-0025928_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025928/ses-2/mri/aal3_sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jq/jj/MD5E-s204229--d46df495f2b26c71f88fa282a948ad28.nii.gz/MD5E-s204229--d46df495f2b26c71f88fa282a948ad28.nii.gz

BNU_2/sub-0025928/ses-2/mri/anatomy3_sub-0025928_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025928/ses-2/mri/anatomy3_sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qW/v8/MD5E-s150804--648e7bdc512dc803f6dc0e7103e56782.nii.gz/MD5E-s150804--648e7bdc512dc803f6dc0e7103e56782.nii.gz

BNU_2/sub-0025928/ses-2/mri/anon_misub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FV/3x/MD5E-s5138111--f32b475457be6990ee58440e927a4d3e.nii.gz/MD5E-s5138111--f32b475457be6990ee58440e927a4d3e.nii.gz

BNU_2/sub-0025928/ses-2/mri/anon_msub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6v/j3/MD5E-s11208504--e99d956a8b23c674a56fa8d17a62bf5d.nii.gz/MD5E-s11208504--e99d956a8b23c674a56fa8d17a62bf5d.nii.gz

BNU_2/sub-0025928/ses-2/mri/cat_sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/2V/MD5E-s110100--0b7dca6bfa1736ff4a087edd4ee9e71b.nii.gz/MD5E-s110100--0b7dca6bfa1736ff4a087edd4ee9e71b.nii.gz

BNU_2/sub-0025928/ses-2/mri/cobra_sub-0025928_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025928/ses-2/mri/cobra_sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x1/1w/MD5E-s50267--be61a7f05cc14183b4f1227e1a875da6.nii.gz/MD5E-s50267--be61a7f05cc14183b4f1227e1a875da6.nii.gz

BNU_2/sub-0025928/ses-2/mri/hammers_sub-0025928_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025928/ses-2/mri/hammers_sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/K5/MD5E-s163796--378de2e69921b8a23696fd004e47359c.nii.gz/MD5E-s163796--378de2e69921b8a23696fd004e47359c.nii.gz

BNU_2/sub-0025928/ses-2/mri/ibsr_sub-0025928_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025928/ses-2/mri/ibsr_sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jk/3K/MD5E-s171105--3b554de3ae4805feb890f8458d8c4058.nii.gz/MD5E-s171105--3b554de3ae4805feb890f8458d8c4058.nii.gz

BNU_2/sub-0025928/ses-2/mri/it_sub-0025928_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KW/wq/MD5E-s284--d6f9d70dcb1147c98b96807b273c8814.mat/MD5E-s284--d6f9d70dcb1147c98b96807b273c8814.mat

BNU_2/sub-0025928/ses-2/mri/it_sub-0025928_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wK/38/MD5E-s283--7aaae9bee0f9b24ae9d0033509008b2e.mat/MD5E-s283--7aaae9bee0f9b24ae9d0033509008b2e.mat

BNU_2/sub-0025928/ses-2/mri/iy_sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w4/6V/MD5E-s52541439--51f0293c4d2e6c9cd5778e28da63c7f9.nii.gz/MD5E-s52541439--51f0293c4d2e6c9cd5778e28da63c7f9.nii.gz

BNU_2/sub-0025928/ses-2/mri/julichbrain_sub-0025928_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025928/ses-2/mri/julichbrain_sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3q/K4/MD5E-s221872--3f888c34842ff7b8307897b6d1cfc325.nii.gz/MD5E-s221872--3f888c34842ff7b8307897b6d1cfc325.nii.gz

BNU_2/sub-0025928/ses-2/mri/lpba40_sub-0025928_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025928/ses-2/mri/lpba40_sub-0025928_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025928/ses-2/mri/m0wp1sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4w/J4/MD5E-s2575716--e73b791f097a6d2a1c5211c5b24751d3.nii.gz/MD5E-s2575716--e73b791f097a6d2a1c5211c5b24751d3.nii.gz

BNU_2/sub-0025928/ses-2/mri/m0wp2sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025928/ses-2/mri/m0wp3sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xm/p5/MD5E-s2542111--5946244059c4f69077394f1880918185.nii.gz/MD5E-s2542111--5946244059c4f69077394f1880918185.nii.gz

BNU_2/sub-0025928/ses-2/mri/mori_sub-0025928_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025928/ses-2/mri/mori_sub-0025928_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/86/0m/MD5E-s188556--2fce0a0aa1b24f0739873e4a21d70939.nii.gz/MD5E-s188556--2fce0a0aa1b24f0739873e4a21d70939.nii.gz

BNU_2/sub-0025928/ses-2/mri/mwp1sub-0025928_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025928/ses-2/mri/mwp2sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/9G/MD5E-s2275669--898ea206e3f78df479656c2216ed4914.nii.gz/MD5E-s2275669--898ea206e3f78df479656c2216ed4914.nii.gz

BNU_2/sub-0025928/ses-2/mri/mwp3sub-0025928_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025928/ses-2/mri/neuromorphometrics_sub-0025928_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025928/ses-2/mri/neuromorphometrics_sub-0025928_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025928/ses-2/mri/p0sub-0025928_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025928/ses-2/mri/p1sub-0025928_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025928/ses-2/mri/p2sub-0025928_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025928/ses-2/mri/p3sub-0025928_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025928/ses-2/mri/rp1sub-0025928_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025928/ses-2/mri/rp2sub-0025928_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025928/ses-2/mri/rp3sub-0025928_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025928/ses-2/mri/t_sub-0025928_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025928/ses-2/mri/t_sub-0025928_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025928/ses-2/mri/thalamus_sub-0025928_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025928/ses-2/mri/thalamus_sub-0025928_ses-2_run-1_T1w.nii.gz

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