[DATALAD RUNCMD] Compute IACAS/sub-0025471/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025471/ses-2/anat/sub-0025471_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025471/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025471/ses-2/label/catROI_sub-0025471_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/19/2X/MD5E-s57932--675c97d4b56f7abf4a1786323de2bd0d.mat/MD5E-s57932--675c97d4b56f7abf4a1786323de2bd0d.mat

IACAS/sub-0025471/ses-2/label/catROI_sub-0025471_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/71/Xp/MD5E-s189039--fabc28afd0dc9fafae151afcde44ee4f.xml/MD5E-s189039--fabc28afd0dc9fafae151afcde44ee4f.xml

IACAS/sub-0025471/ses-2/label/catROIs_sub-0025471_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k2/g2/MD5E-s120156--13399fd1cc97d369cfe2e722308ad245.mat/MD5E-s120156--13399fd1cc97d369cfe2e722308ad245.mat

IACAS/sub-0025471/ses-2/label/catROIs_sub-0025471_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/67/MD5E-s332062--b5d8b5180308e032258fe43ccf9b0a5a.xml/MD5E-s332062--b5d8b5180308e032258fe43ccf9b0a5a.xml

IACAS/sub-0025471/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025471_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025471/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025471_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/00/JJ/MD5E-s163712--a5c73fbc956cb947c675d6b975650c0c.nii.gz/MD5E-s163712--a5c73fbc956cb947c675d6b975650c0c.nii.gz

IACAS/sub-0025471/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025471_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025471/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025471_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/j7/MD5E-s182858--76e809e1a1288d251acdb61689a00809.nii.gz/MD5E-s182858--76e809e1a1288d251acdb61689a00809.nii.gz

IACAS/sub-0025471/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025471_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025471/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025471_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v0/W7/MD5E-s246173--e69b6ac35e2408e8c177428187b9a3ec.nii.gz/MD5E-s246173--e69b6ac35e2408e8c177428187b9a3ec.nii.gz

IACAS/sub-0025471/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025471_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025471/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025471_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9w/jW/MD5E-s274139--dc39f54fb9ac9d4458438cac2c707918.nii.gz/MD5E-s274139--dc39f54fb9ac9d4458438cac2c707918.nii.gz

IACAS/sub-0025471/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025471_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025471/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025471_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/8j/vm/MD5E-s25996--0f9fae52d6d4b5d83527da3770306776.nii.gz/MD5E-s25996--0f9fae52d6d4b5d83527da3770306776.nii.gz

IACAS/sub-0025471/ses-2/mri/aal3_sub-0025471_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025471/ses-2/mri/aal3_sub-0025471_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025471/ses-2/mri/anatomy3_sub-0025471_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025471/ses-2/mri/anatomy3_sub-0025471_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9w/q4/MD5E-s132944--956946fd57ef1820fd2ce9b090fec50b.nii.gz/MD5E-s132944--956946fd57ef1820fd2ce9b090fec50b.nii.gz

IACAS/sub-0025471/ses-2/mri/anon_misub-0025471_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xp/k6/MD5E-s7367712--36adae20852717c2e20fa0922cc17b14.nii.gz/MD5E-s7367712--36adae20852717c2e20fa0922cc17b14.nii.gz

IACAS/sub-0025471/ses-2/mri/anon_msub-0025471_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pP/9k/MD5E-s6790031--eb9cdff98bf6d051fdb26ffb0cf6c7a9.nii.gz/MD5E-s6790031--eb9cdff98bf6d051fdb26ffb0cf6c7a9.nii.gz

IACAS/sub-0025471/ses-2/mri/cat_sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/cobra_sub-0025471_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025471/ses-2/mri/cobra_sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/hammers_sub-0025471_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025471/ses-2/mri/hammers_sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/ibsr_sub-0025471_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025471/ses-2/mri/ibsr_sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/it_sub-0025471_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/56/JV/MD5E-s281--affc5b0287cfbb6d91129bbaee23eaba.mat/MD5E-s281--affc5b0287cfbb6d91129bbaee23eaba.mat

IACAS/sub-0025471/ses-2/mri/it_sub-0025471_ses-2_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025471/ses-2/mri/iy_sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/julichbrain_sub-0025471_ses-2_run-1_T1w.csv

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IACAS/sub-0025471/ses-2/mri/julichbrain_sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/lpba40_sub-0025471_ses-2_run-1_T1w.csv

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IACAS/sub-0025471/ses-2/mri/lpba40_sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/m0wp1sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/m0wp2sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/m0wp3sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/mori_sub-0025471_ses-2_run-1_T1w.csv

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IACAS/sub-0025471/ses-2/mri/mori_sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/mwp1sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/mwp2sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/mwp3sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/neuromorphometrics_sub-0025471_ses-2_run-1_T1w.csv

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IACAS/sub-0025471/ses-2/mri/neuromorphometrics_sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/p0sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/p1sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/p2sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/p3sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/rp1sub-0025471_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025471/ses-2/mri/rp2sub-0025471_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025471/ses-2/mri/rp3sub-0025471_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025471/ses-2/mri/t_sub-0025471_ses-2_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025471/ses-2/mri/t_sub-0025471_ses-2_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025471/ses-2/mri/thalamus_sub-0025471_ses-2_run-1_T1w.csv

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IACAS/sub-0025471/ses-2/mri/thalamus_sub-0025471_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025471/ses-2/mri/wj_sub-0025471_ses-2_run-1_T1w.nii.gz

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