[DATALAD RUNCMD] Compute MRN/sub-0027015/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027015/ses-1/anat/sub-0027015_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027015/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027015/ses-1/label/catROI_sub-0027015_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pv/06/MD5E-s61319--99f9a946f3ca4d23d0cc5372c17ee9e5.mat/MD5E-s61319--99f9a946f3ca4d23d0cc5372c17ee9e5.mat

MRN/sub-0027015/ses-1/label/catROI_sub-0027015_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vq/GP/MD5E-s189023--84fa0772490ef7b52e62be28d290caa1.xml/MD5E-s189023--84fa0772490ef7b52e62be28d290caa1.xml

MRN/sub-0027015/ses-1/label/catROIs_sub-0027015_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/9W/MD5E-s120132--b5f74f1ee7931b330a88f1f95ad52df2.mat/MD5E-s120132--b5f74f1ee7931b330a88f1f95ad52df2.mat

MRN/sub-0027015/ses-1/label/catROIs_sub-0027015_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W3/K1/MD5E-s332091--eafe97f06222effda906e04f041d9c77.xml/MD5E-s332091--eafe97f06222effda906e04f041d9c77.xml

MRN/sub-0027015/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027015/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zF/M4/MD5E-s174240--80cdc9e44c3bada4bb3fed5555ff55eb.nii.gz/MD5E-s174240--80cdc9e44c3bada4bb3fed5555ff55eb.nii.gz

MRN/sub-0027015/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027015/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gJ/Wx/MD5E-s194010--9b250991ab24ccf645186a38c460ac52.nii.gz/MD5E-s194010--9b250991ab24ccf645186a38c460ac52.nii.gz

MRN/sub-0027015/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027015/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6M/4k/MD5E-s260361--8aaa988ee015ad7f2416a3951b3df154.nii.gz/MD5E-s260361--8aaa988ee015ad7f2416a3951b3df154.nii.gz

MRN/sub-0027015/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027015/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VW/5q/MD5E-s288139--2b4afe54a29d58803f1aeb12144e3128.nii.gz/MD5E-s288139--2b4afe54a29d58803f1aeb12144e3128.nii.gz

MRN/sub-0027015/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MRN/sub-0027015/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9x/v2/MD5E-s25958--1c51581fabd5f1967a7da1e63c92f197.nii.gz/MD5E-s25958--1c51581fabd5f1967a7da1e63c92f197.nii.gz

MRN/sub-0027015/ses-1/mri/aal3_sub-0027015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027015/ses-1/mri/aal3_sub-0027015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027015/ses-1/mri/anatomy3_sub-0027015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MRN/sub-0027015/ses-1/mri/anatomy3_sub-0027015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m9/wp/MD5E-s143133--12a1cc6c6bfdae1966bd753a83ab2e36.nii.gz/MD5E-s143133--12a1cc6c6bfdae1966bd753a83ab2e36.nii.gz

MRN/sub-0027015/ses-1/mri/anon_misub-0027015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4p/gZ/MD5E-s9806476--2f622351dd118e846827d9c534a1f46e.nii.gz/MD5E-s9806476--2f622351dd118e846827d9c534a1f46e.nii.gz

MRN/sub-0027015/ses-1/mri/anon_msub-0027015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j3/63/MD5E-s10731019--75f8d05d80847f9bcd3949c78c32e1a6.nii.gz/MD5E-s10731019--75f8d05d80847f9bcd3949c78c32e1a6.nii.gz

MRN/sub-0027015/ses-1/mri/cat_sub-0027015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QQ/jp/MD5E-s104501--825580f060aca1e7bba344650e73deb1.nii.gz/MD5E-s104501--825580f060aca1e7bba344650e73deb1.nii.gz

MRN/sub-0027015/ses-1/mri/cobra_sub-0027015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027015/ses-1/mri/cobra_sub-0027015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/29/gZ/MD5E-s51049--abea9b7922dc54670bb7d7c9ff3fdcab.nii.gz/MD5E-s51049--abea9b7922dc54670bb7d7c9ff3fdcab.nii.gz

MRN/sub-0027015/ses-1/mri/hammers_sub-0027015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MRN/sub-0027015/ses-1/mri/hammers_sub-0027015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027015/ses-1/mri/ibsr_sub-0027015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027015/ses-1/mri/ibsr_sub-0027015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wz/7m/MD5E-s161383--f6c41ca23bf0d932296644a88628ed29.nii.gz/MD5E-s161383--f6c41ca23bf0d932296644a88628ed29.nii.gz

MRN/sub-0027015/ses-1/mri/it_sub-0027015_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/VF/MD5E-s284--81970409de0f76d99491c0ec7d39eab2.mat/MD5E-s284--81970409de0f76d99491c0ec7d39eab2.mat

MRN/sub-0027015/ses-1/mri/it_sub-0027015_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kv/5v/MD5E-s284--6c1a156c534d12aefd5ab5011c5b824d.mat/MD5E-s284--6c1a156c534d12aefd5ab5011c5b824d.mat

MRN/sub-0027015/ses-1/mri/iy_sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/julichbrain_sub-0027015_ses-1_run-1_T1w.csv

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MRN/sub-0027015/ses-1/mri/julichbrain_sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/lpba40_sub-0027015_ses-1_run-1_T1w.csv

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MRN/sub-0027015/ses-1/mri/lpba40_sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/m0wp1sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/m0wp2sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/m0wp3sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/mori_sub-0027015_ses-1_run-1_T1w.csv

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MRN/sub-0027015/ses-1/mri/mori_sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/mwp1sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/mwp2sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/mwp3sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/neuromorphometrics_sub-0027015_ses-1_run-1_T1w.csv

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MRN/sub-0027015/ses-1/mri/neuromorphometrics_sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/p0sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/p1sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/p2sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/p3sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/rp1sub-0027015_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027015/ses-1/mri/rp2sub-0027015_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027015/ses-1/mri/rp3sub-0027015_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027015/ses-1/mri/t_sub-0027015_ses-1_run-1_T1w_affine_reorient.mat

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MRN/sub-0027015/ses-1/mri/t_sub-0027015_ses-1_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027015/ses-1/mri/thalamus_sub-0027015_ses-1_run-1_T1w.csv

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MRN/sub-0027015/ses-1/mri/thalamus_sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/wj_sub-0027015_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027015/ses-1/mri/wmisub-0027015_ses-1_run-1_T1w.nii.gz

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