[DATALAD RUNCMD] Compute IACAS/sub-0025472/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025472/ses-2/anat/sub-0025472_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025472/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025472/ses-2/label/catROI_sub-0025472_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/00/15/MD5E-s58192--cb4c80d023e33f366bc4176635c9b9c4.mat/MD5E-s58192--cb4c80d023e33f366bc4176635c9b9c4.mat

IACAS/sub-0025472/ses-2/label/catROI_sub-0025472_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wp/Xq/MD5E-s188713--a39cb58fb51cb048726731ed66020976.xml/MD5E-s188713--a39cb58fb51cb048726731ed66020976.xml

IACAS/sub-0025472/ses-2/label/catROIs_sub-0025472_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QF/Pf/MD5E-s120158--654f584840b2d13c94c40e998862d177.mat/MD5E-s120158--654f584840b2d13c94c40e998862d177.mat

IACAS/sub-0025472/ses-2/label/catROIs_sub-0025472_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X9/7x/MD5E-s332172--052440db7b8c767e43e68bdd995a322b.xml/MD5E-s332172--052440db7b8c767e43e68bdd995a322b.xml

IACAS/sub-0025472/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025472_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025472/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0V/Xz/MD5E-s179308--85110ca8b71376a80bb52f2437a25234.nii.gz/MD5E-s179308--85110ca8b71376a80bb52f2437a25234.nii.gz

IACAS/sub-0025472/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025472_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025472/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fx/m0/MD5E-s202585--eb747fd69df34c4499308f08f8a8e288.nii.gz/MD5E-s202585--eb747fd69df34c4499308f08f8a8e288.nii.gz

IACAS/sub-0025472/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025472_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025472/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KW/k2/MD5E-s270081--1b88dd91f095a054767c2f6d6197a70e.nii.gz/MD5E-s270081--1b88dd91f095a054767c2f6d6197a70e.nii.gz

IACAS/sub-0025472/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025472_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025472/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/06/zm/MD5E-s300548--ba99aadce903a76fcf070bf5c0506e16.nii.gz/MD5E-s300548--ba99aadce903a76fcf070bf5c0506e16.nii.gz

IACAS/sub-0025472/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025472_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025472/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VZ/Ff/MD5E-s27247--cec9c39189cb31c9f7c7f206048e5507.nii.gz/MD5E-s27247--cec9c39189cb31c9f7c7f206048e5507.nii.gz

IACAS/sub-0025472/ses-2/mri/aal3_sub-0025472_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025472/ses-2/mri/aal3_sub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/97/MD5E-s202954--bb37bedcd7443116e9629b4904fb092c.nii.gz/MD5E-s202954--bb37bedcd7443116e9629b4904fb092c.nii.gz

IACAS/sub-0025472/ses-2/mri/anatomy3_sub-0025472_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025472/ses-2/mri/anatomy3_sub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WX/Xv/MD5E-s148532--24be26aad5f3aa817f9d1d6353660a08.nii.gz/MD5E-s148532--24be26aad5f3aa817f9d1d6353660a08.nii.gz

IACAS/sub-0025472/ses-2/mri/anon_misub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jG/Vq/MD5E-s9986284--f0d853eb0e59efb192a52fb541d3008d.nii.gz/MD5E-s9986284--f0d853eb0e59efb192a52fb541d3008d.nii.gz

IACAS/sub-0025472/ses-2/mri/anon_msub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/p9/MD5E-s11332096--daf9a46bf27ec5d227e976e821350c7f.nii.gz/MD5E-s11332096--daf9a46bf27ec5d227e976e821350c7f.nii.gz

IACAS/sub-0025472/ses-2/mri/cat_sub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8J/FW/MD5E-s115925--4e5ba123d13ebf8011e124b4ec053dd0.nii.gz/MD5E-s115925--4e5ba123d13ebf8011e124b4ec053dd0.nii.gz

IACAS/sub-0025472/ses-2/mri/cobra_sub-0025472_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025472/ses-2/mri/cobra_sub-0025472_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025472/ses-2/mri/hammers_sub-0025472_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025472/ses-2/mri/hammers_sub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m2/44/MD5E-s160722--ec7dc8bab1211ae8ae0d54af0d1a3549.nii.gz/MD5E-s160722--ec7dc8bab1211ae8ae0d54af0d1a3549.nii.gz

IACAS/sub-0025472/ses-2/mri/ibsr_sub-0025472_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025472/ses-2/mri/ibsr_sub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xz/g5/MD5E-s169839--2ad8835ef7494d9d6c8daf3757b547eb.nii.gz/MD5E-s169839--2ad8835ef7494d9d6c8daf3757b547eb.nii.gz

IACAS/sub-0025472/ses-2/mri/it_sub-0025472_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zk/2F/MD5E-s282--67c48f9ef21334dcc728b1e1627c21b7.mat/MD5E-s282--67c48f9ef21334dcc728b1e1627c21b7.mat

IACAS/sub-0025472/ses-2/mri/it_sub-0025472_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K6/1v/MD5E-s284--c1ed2360a9f9c980f15ba792c4698f2c.mat/MD5E-s284--c1ed2360a9f9c980f15ba792c4698f2c.mat

IACAS/sub-0025472/ses-2/mri/iy_sub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xj/f3/MD5E-s52788235--2288155811f5c0586a46b2200361b38c.nii.gz/MD5E-s52788235--2288155811f5c0586a46b2200361b38c.nii.gz

IACAS/sub-0025472/ses-2/mri/julichbrain_sub-0025472_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

IACAS/sub-0025472/ses-2/mri/julichbrain_sub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J2/VW/MD5E-s216763--9d4e3edacaba211ec1133f0bdd3844c1.nii.gz/MD5E-s216763--9d4e3edacaba211ec1133f0bdd3844c1.nii.gz

IACAS/sub-0025472/ses-2/mri/lpba40_sub-0025472_ses-2_run-1_T1w.csv

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IACAS/sub-0025472/ses-2/mri/lpba40_sub-0025472_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025472/ses-2/mri/m0wp1sub-0025472_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025472/ses-2/mri/m0wp2sub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025472/ses-2/mri/m0wp3sub-0025472_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025472/ses-2/mri/mori_sub-0025472_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025472/ses-2/mri/mori_sub-0025472_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025472/ses-2/mri/mwp1sub-0025472_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025472/ses-2/mri/mwp2sub-0025472_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025472/ses-2/mri/mwp3sub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025472/ses-2/mri/neuromorphometrics_sub-0025472_ses-2_run-1_T1w.csv

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IACAS/sub-0025472/ses-2/mri/neuromorphometrics_sub-0025472_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025472/ses-2/mri/p0sub-0025472_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025472/ses-2/mri/p1sub-0025472_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025472/ses-2/mri/p2sub-0025472_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025472/ses-2/mri/p3sub-0025472_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025472/ses-2/mri/rp1sub-0025472_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025472/ses-2/mri/rp2sub-0025472_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025472/ses-2/mri/rp3sub-0025472_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025472/ses-2/mri/t_sub-0025472_ses-2_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025472/ses-2/mri/t_sub-0025472_ses-2_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025472/ses-2/mri/thalamus_sub-0025472_ses-2_run-1_T1w.csv

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IACAS/sub-0025472/ses-2/mri/thalamus_sub-0025472_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025472/ses-2/mri/wj_sub-0025472_ses-2_run-1_T1w.nii.gz

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