[DATALAD RUNCMD] Compute IACAS/sub-0025469/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025469/ses-1/anat/sub-0025469_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025469/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025469/ses-1/label/catROI_sub-0025469_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kq/53/MD5E-s58116--b339943f2931a5ab6696c6e1ad102920.mat/MD5E-s58116--b339943f2931a5ab6696c6e1ad102920.mat

IACAS/sub-0025469/ses-1/label/catROI_sub-0025469_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jQ/vW/MD5E-s188635--79606216465febc489d1bbb7c0b4c085.xml/MD5E-s188635--79606216465febc489d1bbb7c0b4c085.xml

IACAS/sub-0025469/ses-1/label/catROIs_sub-0025469_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wp/X8/MD5E-s120173--d7474b193cef521db90f66c61b784a00.mat/MD5E-s120173--d7474b193cef521db90f66c61b784a00.mat

IACAS/sub-0025469/ses-1/label/catROIs_sub-0025469_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g7/pP/MD5E-s332191--967f865deb07553f32c79e2c0aeca931.xml/MD5E-s332191--967f865deb07553f32c79e2c0aeca931.xml

IACAS/sub-0025469/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025469_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025469/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025469_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025469/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025469_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025469/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025469_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mw/Zq/MD5E-s200581--4ad2b287d38b400c8dfd7e17cbbecf5a.nii.gz/MD5E-s200581--4ad2b287d38b400c8dfd7e17cbbecf5a.nii.gz

IACAS/sub-0025469/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025469_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025469/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025469_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V4/F0/MD5E-s268783--b57dad78d5e84e86a0caa8a0d69791ad.nii.gz/MD5E-s268783--b57dad78d5e84e86a0caa8a0d69791ad.nii.gz

IACAS/sub-0025469/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025469_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025469/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025469_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k1/Q6/MD5E-s299817--e900efa7026801c23f02ff4e7eaada83.nii.gz/MD5E-s299817--e900efa7026801c23f02ff4e7eaada83.nii.gz

IACAS/sub-0025469/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025469_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025469/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025469_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xw/kV/MD5E-s27171--6ec6b77d448ce5d2a98e3020b4ff5f4e.nii.gz/MD5E-s27171--6ec6b77d448ce5d2a98e3020b4ff5f4e.nii.gz

IACAS/sub-0025469/ses-1/mri/aal3_sub-0025469_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025469/ses-1/mri/aal3_sub-0025469_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025469/ses-1/mri/anatomy3_sub-0025469_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025469/ses-1/mri/anatomy3_sub-0025469_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1F/P4/MD5E-s146979--959203f45de91c0a74fa04348c38dbad.nii.gz/MD5E-s146979--959203f45de91c0a74fa04348c38dbad.nii.gz

IACAS/sub-0025469/ses-1/mri/anon_misub-0025469_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pk/0K/MD5E-s9561504--e30ba2785b91b8d34c9958d6e341772a.nii.gz/MD5E-s9561504--e30ba2785b91b8d34c9958d6e341772a.nii.gz

IACAS/sub-0025469/ses-1/mri/anon_msub-0025469_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/9p/MD5E-s10706288--832923fd6f93975091c65e660421dcff.nii.gz/MD5E-s10706288--832923fd6f93975091c65e660421dcff.nii.gz

IACAS/sub-0025469/ses-1/mri/cat_sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/cobra_sub-0025469_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025469/ses-1/mri/cobra_sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/hammers_sub-0025469_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025469/ses-1/mri/hammers_sub-0025469_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/7x/68/MD5E-s157834--e24e908cf256b321d641b2d4192d28e4.nii.gz/MD5E-s157834--e24e908cf256b321d641b2d4192d28e4.nii.gz

IACAS/sub-0025469/ses-1/mri/ibsr_sub-0025469_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025469/ses-1/mri/ibsr_sub-0025469_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/5g/3K/MD5E-s166666--948313373696b474af415d8644e6511d.nii.gz/MD5E-s166666--948313373696b474af415d8644e6511d.nii.gz

IACAS/sub-0025469/ses-1/mri/it_sub-0025469_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/66/Kf/MD5E-s283--72058d5ee92179a2535c019026cfce1b.mat/MD5E-s283--72058d5ee92179a2535c019026cfce1b.mat

IACAS/sub-0025469/ses-1/mri/it_sub-0025469_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MZ/74/MD5E-s283--db9abfe6dad46ffa1012dd0571a17cd0.mat/MD5E-s283--db9abfe6dad46ffa1012dd0571a17cd0.mat

IACAS/sub-0025469/ses-1/mri/iy_sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/julichbrain_sub-0025469_ses-1_run-1_T1w.csv

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IACAS/sub-0025469/ses-1/mri/julichbrain_sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/lpba40_sub-0025469_ses-1_run-1_T1w.csv

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IACAS/sub-0025469/ses-1/mri/lpba40_sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/m0wp1sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/m0wp2sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/m0wp3sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/mori_sub-0025469_ses-1_run-1_T1w.csv

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IACAS/sub-0025469/ses-1/mri/mori_sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/mwp1sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/mwp2sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/mwp3sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/neuromorphometrics_sub-0025469_ses-1_run-1_T1w.csv

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IACAS/sub-0025469/ses-1/mri/neuromorphometrics_sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/p0sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/p1sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/p2sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/p3sub-0025469_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025469/ses-1/mri/rp1sub-0025469_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025469/ses-1/mri/rp2sub-0025469_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025469/ses-1/mri/rp3sub-0025469_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025469/ses-1/mri/t_sub-0025469_ses-1_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025469/ses-1/mri/t_sub-0025469_ses-1_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025469/ses-1/mri/thalamus_sub-0025469_ses-1_run-1_T1w.csv

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IACAS/sub-0025469/ses-1/mri/thalamus_sub-0025469_ses-1_run-1_T1w.nii.gz

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