[DATALAD RUNCMD] Compute SWU_4/sub-0025629/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025629/ses-2/anat/sub-0025629_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025629/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025629/ses-2/label/catROI_sub-0025629_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/K8/MD5E-s61215--546b268d54864d1242406c4232c0191e.mat/MD5E-s61215--546b268d54864d1242406c4232c0191e.mat

SWU_4/sub-0025629/ses-2/label/catROI_sub-0025629_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G0/34/MD5E-s189032--fb55142fd15ec5c055cb1cc106a48f17.xml/MD5E-s189032--fb55142fd15ec5c055cb1cc106a48f17.xml

SWU_4/sub-0025629/ses-2/label/catROIs_sub-0025629_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/11/fg/MD5E-s120105--18badd59c151718536d939053ad52599.mat/MD5E-s120105--18badd59c151718536d939053ad52599.mat

SWU_4/sub-0025629/ses-2/label/catROIs_sub-0025629_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4V/50/MD5E-s332173--254ed1924b97c716c34af1a0ae1c5983.xml/MD5E-s332173--254ed1924b97c716c34af1a0ae1c5983.xml

SWU_4/sub-0025629/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025629_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025629/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0q/7J/MD5E-s152519--1edc9f8aaf47a086e36ca70624d38e36.nii.gz/MD5E-s152519--1edc9f8aaf47a086e36ca70624d38e36.nii.gz

SWU_4/sub-0025629/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025629_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025629/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4p/z5/MD5E-s170714--5c87a214b91eaf5ee378535dd5b53202.nii.gz/MD5E-s170714--5c87a214b91eaf5ee378535dd5b53202.nii.gz

SWU_4/sub-0025629/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025629_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025629/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gp/Z1/MD5E-s230975--57ae545641ec6055cf755e5a6a1ab13f.nii.gz/MD5E-s230975--57ae545641ec6055cf755e5a6a1ab13f.nii.gz

SWU_4/sub-0025629/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025629_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025629/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x9/F8/MD5E-s256568--9f72cf5908d7808f7060988400364a42.nii.gz/MD5E-s256568--9f72cf5908d7808f7060988400364a42.nii.gz

SWU_4/sub-0025629/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025629_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025629/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PX/K8/MD5E-s23376--c715bd14d4a236f887f47276dd9db7ff.nii.gz/MD5E-s23376--c715bd14d4a236f887f47276dd9db7ff.nii.gz

SWU_4/sub-0025629/ses-2/mri/aal3_sub-0025629_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025629/ses-2/mri/aal3_sub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6w/Zk/MD5E-s174498--ea15fbfe3aa4c3dbd605b7c28cb0426b.nii.gz/MD5E-s174498--ea15fbfe3aa4c3dbd605b7c28cb0426b.nii.gz

SWU_4/sub-0025629/ses-2/mri/anatomy3_sub-0025629_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025629/ses-2/mri/anatomy3_sub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qX/XM/MD5E-s125586--e4509a132771ed8b5e6dd4d2cbe4a742.nii.gz/MD5E-s125586--e4509a132771ed8b5e6dd4d2cbe4a742.nii.gz

SWU_4/sub-0025629/ses-2/mri/anon_misub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pm/2w/MD5E-s11729070--7bacc65e9c1451756052edcad1206cbc.nii.gz/MD5E-s11729070--7bacc65e9c1451756052edcad1206cbc.nii.gz

SWU_4/sub-0025629/ses-2/mri/anon_msub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V7/qj/MD5E-s12849406--424968d5b72f6a163a07e90805b01e3c.nii.gz/MD5E-s12849406--424968d5b72f6a163a07e90805b01e3c.nii.gz

SWU_4/sub-0025629/ses-2/mri/cat_sub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/84/JQ/MD5E-s96475--fec48e10b0a3dd87d32d60e16cffccff.nii.gz/MD5E-s96475--fec48e10b0a3dd87d32d60e16cffccff.nii.gz

SWU_4/sub-0025629/ses-2/mri/cobra_sub-0025629_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025629/ses-2/mri/cobra_sub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q8/q9/MD5E-s47069--7e743455d6955869ab23535823b53a15.nii.gz/MD5E-s47069--7e743455d6955869ab23535823b53a15.nii.gz

SWU_4/sub-0025629/ses-2/mri/hammers_sub-0025629_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025629/ses-2/mri/hammers_sub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1F/8j/MD5E-s137098--a429ed6767c940d78f3731ae16a21c42.nii.gz/MD5E-s137098--a429ed6767c940d78f3731ae16a21c42.nii.gz

SWU_4/sub-0025629/ses-2/mri/ibsr_sub-0025629_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025629/ses-2/mri/ibsr_sub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vZ/X6/MD5E-s145905--9292ddfa86bcacd3633423a3fd6b56f6.nii.gz/MD5E-s145905--9292ddfa86bcacd3633423a3fd6b56f6.nii.gz

SWU_4/sub-0025629/ses-2/mri/it_sub-0025629_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wz/JP/MD5E-s282--d002aeae0dc1370884642027fb228653.mat/MD5E-s282--d002aeae0dc1370884642027fb228653.mat

SWU_4/sub-0025629/ses-2/mri/it_sub-0025629_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m0/Z6/MD5E-s283--ca630666e262d1dcb686bf998579428d.mat/MD5E-s283--ca630666e262d1dcb686bf998579428d.mat

SWU_4/sub-0025629/ses-2/mri/iy_sub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zp/KQ/MD5E-s43953178--ad09d27e6a996b508376884374390d09.nii.gz/MD5E-s43953178--ad09d27e6a996b508376884374390d09.nii.gz

SWU_4/sub-0025629/ses-2/mri/julichbrain_sub-0025629_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025629/ses-2/mri/julichbrain_sub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/7z/MD5E-s183161--9856374ab5dad11d97bc3b39805b1fb9.nii.gz/MD5E-s183161--9856374ab5dad11d97bc3b39805b1fb9.nii.gz

SWU_4/sub-0025629/ses-2/mri/lpba40_sub-0025629_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025629/ses-2/mri/lpba40_sub-0025629_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025629/ses-2/mri/m0wp1sub-0025629_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025629/ses-2/mri/m0wp2sub-0025629_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/xK/vk/MD5E-s2312035--1206fa812de7dfb57167532d9f358911.nii.gz/MD5E-s2312035--1206fa812de7dfb57167532d9f358911.nii.gz

SWU_4/sub-0025629/ses-2/mri/m0wp3sub-0025629_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025629/ses-2/mri/mori_sub-0025629_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025629/ses-2/mri/mori_sub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FM/gm/MD5E-s161329--e5cc4e70157e974ed23ec0d1bc0bea60.nii.gz/MD5E-s161329--e5cc4e70157e974ed23ec0d1bc0bea60.nii.gz

SWU_4/sub-0025629/ses-2/mri/mwp1sub-0025629_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/QW/V8/MD5E-s2589156--1bc1d9cf4600314d78e5c628f50537cc.nii.gz/MD5E-s2589156--1bc1d9cf4600314d78e5c628f50537cc.nii.gz

SWU_4/sub-0025629/ses-2/mri/mwp2sub-0025629_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025629/ses-2/mri/mwp3sub-0025629_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025629/ses-2/mri/neuromorphometrics_sub-0025629_ses-2_run-1_T1w.csv

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SWU_4/sub-0025629/ses-2/mri/neuromorphometrics_sub-0025629_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025629/ses-2/mri/p0sub-0025629_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025629/ses-2/mri/p1sub-0025629_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025629/ses-2/mri/p2sub-0025629_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025629/ses-2/mri/p3sub-0025629_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025629/ses-2/mri/rp1sub-0025629_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025629/ses-2/mri/rp2sub-0025629_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025629/ses-2/mri/rp3sub-0025629_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025629/ses-2/mri/t_sub-0025629_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025629/ses-2/mri/t_sub-0025629_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025629/ses-2/mri/thalamus_sub-0025629_ses-2_run-1_T1w.csv

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SWU_4/sub-0025629/ses-2/mri/thalamus_sub-0025629_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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