[DATALAD RUNCMD] Compute SWU_4/sub-0025697/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025697/ses-2/anat/sub-0025697_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025697/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025697/ses-2/label/catROI_sub-0025697_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vq/7p/MD5E-s61249--d3dbbcc789f1d34fe6635da931c40812.mat/MD5E-s61249--d3dbbcc789f1d34fe6635da931c40812.mat

SWU_4/sub-0025697/ses-2/label/catROI_sub-0025697_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mw/w8/MD5E-s188707--6fe7af00b3a6e667de9eec0ececc2466.xml/MD5E-s188707--6fe7af00b3a6e667de9eec0ececc2466.xml

SWU_4/sub-0025697/ses-2/label/catROIs_sub-0025697_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gM/JW/MD5E-s120179--800e0892ba7085744c4f085bf2322503.mat/MD5E-s120179--800e0892ba7085744c4f085bf2322503.mat

SWU_4/sub-0025697/ses-2/label/catROIs_sub-0025697_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k6/Jk/MD5E-s332123--941240c96351de5b0c50ff373e3a67ff.xml/MD5E-s332123--941240c96351de5b0c50ff373e3a67ff.xml

SWU_4/sub-0025697/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025697_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025697/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gv/qJ/MD5E-s169269--7e1ecaea9e1e2f7a19c4dd79d5ee657d.nii.gz/MD5E-s169269--7e1ecaea9e1e2f7a19c4dd79d5ee657d.nii.gz

SWU_4/sub-0025697/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025697_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025697/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2k/06/MD5E-s188381--74f4a59bdc24e2b567b137bd2267c4e0.nii.gz/MD5E-s188381--74f4a59bdc24e2b567b137bd2267c4e0.nii.gz

SWU_4/sub-0025697/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025697_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025697/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z2/9p/MD5E-s254618--dab0afbd10622319baa92d50805c2b81.nii.gz/MD5E-s254618--dab0afbd10622319baa92d50805c2b81.nii.gz

SWU_4/sub-0025697/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025697_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025697/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J8/FP/MD5E-s281934--a8cbc561233a6b948dce62db3cad2f12.nii.gz/MD5E-s281934--a8cbc561233a6b948dce62db3cad2f12.nii.gz

SWU_4/sub-0025697/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025697_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025697/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/89/MD5E-s24936--f03f1cb0eaa6b61cf0a4dc1a73249cd9.nii.gz/MD5E-s24936--f03f1cb0eaa6b61cf0a4dc1a73249cd9.nii.gz

SWU_4/sub-0025697/ses-2/mri/aal3_sub-0025697_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025697/ses-2/mri/aal3_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V3/Kx/MD5E-s188976--0d8163f601b9cf1e9462dfc0383ee043.nii.gz/MD5E-s188976--0d8163f601b9cf1e9462dfc0383ee043.nii.gz

SWU_4/sub-0025697/ses-2/mri/anatomy3_sub-0025697_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025697/ses-2/mri/anatomy3_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qG/M9/MD5E-s137945--83a917077a225b00184d8bf82638bf26.nii.gz/MD5E-s137945--83a917077a225b00184d8bf82638bf26.nii.gz

SWU_4/sub-0025697/ses-2/mri/anon_misub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q7/wz/MD5E-s9354269--1a9a0d5a7c5f65dfd96febbec0d22cf9.nii.gz/MD5E-s9354269--1a9a0d5a7c5f65dfd96febbec0d22cf9.nii.gz

SWU_4/sub-0025697/ses-2/mri/anon_msub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W4/xk/MD5E-s10703393--038355d68f601098dc5efd0c6ff8debd.nii.gz/MD5E-s10703393--038355d68f601098dc5efd0c6ff8debd.nii.gz

SWU_4/sub-0025697/ses-2/mri/cat_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vz/V5/MD5E-s101263--19ca155833f82d67b86afa4cc31d9545.nii.gz/MD5E-s101263--19ca155833f82d67b86afa4cc31d9545.nii.gz

SWU_4/sub-0025697/ses-2/mri/cobra_sub-0025697_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025697/ses-2/mri/cobra_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fq/P7/MD5E-s48317--3e784c3d4e79cd8691c4368a5c607425.nii.gz/MD5E-s48317--3e784c3d4e79cd8691c4368a5c607425.nii.gz

SWU_4/sub-0025697/ses-2/mri/hammers_sub-0025697_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025697/ses-2/mri/hammers_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V0/Kw/MD5E-s149133--c767725006071cc1dd18cff6e3df50f7.nii.gz/MD5E-s149133--c767725006071cc1dd18cff6e3df50f7.nii.gz

SWU_4/sub-0025697/ses-2/mri/ibsr_sub-0025697_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025697/ses-2/mri/ibsr_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m9/FZ/MD5E-s157102--6f209cad857edbdb235ec59102e58e14.nii.gz/MD5E-s157102--6f209cad857edbdb235ec59102e58e14.nii.gz

SWU_4/sub-0025697/ses-2/mri/it_sub-0025697_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/08/MD5E-s284--e6c333616018fbf7bc98e5f703805562.mat/MD5E-s284--e6c333616018fbf7bc98e5f703805562.mat

SWU_4/sub-0025697/ses-2/mri/it_sub-0025697_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P0/z6/MD5E-s284--ce50b400f916841e2a57805323add8bc.mat/MD5E-s284--ce50b400f916841e2a57805323add8bc.mat

SWU_4/sub-0025697/ses-2/mri/iy_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vP/2V/MD5E-s47644893--488427547c07d685a36dc12b5d0a7f4c.nii.gz/MD5E-s47644893--488427547c07d685a36dc12b5d0a7f4c.nii.gz

SWU_4/sub-0025697/ses-2/mri/julichbrain_sub-0025697_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025697/ses-2/mri/julichbrain_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6v/17/MD5E-s202388--36145ea7f0d2b64011fdea59e2e1b4db.nii.gz/MD5E-s202388--36145ea7f0d2b64011fdea59e2e1b4db.nii.gz

SWU_4/sub-0025697/ses-2/mri/lpba40_sub-0025697_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025697/ses-2/mri/lpba40_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xm/zq/MD5E-s145599--d534e770cc58a32d6ce760d823d9c10d.nii.gz/MD5E-s145599--d534e770cc58a32d6ce760d823d9c10d.nii.gz

SWU_4/sub-0025697/ses-2/mri/m0wp1sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w6/PK/MD5E-s2582847--bd05f891571449d779d5a662cea9b14e.nii.gz/MD5E-s2582847--bd05f891571449d779d5a662cea9b14e.nii.gz

SWU_4/sub-0025697/ses-2/mri/m0wp2sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P1/mZ/MD5E-s2313758--66ee5babe3244aae8411d61e6152eec0.nii.gz/MD5E-s2313758--66ee5babe3244aae8411d61e6152eec0.nii.gz

SWU_4/sub-0025697/ses-2/mri/m0wp3sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k2/Z5/MD5E-s2581891--8c76126f8f3f600cc7f46057b3da2266.nii.gz/MD5E-s2581891--8c76126f8f3f600cc7f46057b3da2266.nii.gz

SWU_4/sub-0025697/ses-2/mri/mori_sub-0025697_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025697/ses-2/mri/mori_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4M/pW/MD5E-s174692--df217ac2b7f5b65ebacf465fddcff90e.nii.gz/MD5E-s174692--df217ac2b7f5b65ebacf465fddcff90e.nii.gz

SWU_4/sub-0025697/ses-2/mri/mwp1sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q9/Q4/MD5E-s2586626--65cbc4acb1889f5589dfb1c1c5393bd4.nii.gz/MD5E-s2586626--65cbc4acb1889f5589dfb1c1c5393bd4.nii.gz

SWU_4/sub-0025697/ses-2/mri/mwp2sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qw/G2/MD5E-s2313125--50180e0d9b498f39337eb71fb8b3313f.nii.gz/MD5E-s2313125--50180e0d9b498f39337eb71fb8b3313f.nii.gz

SWU_4/sub-0025697/ses-2/mri/mwp3sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P0/z5/MD5E-s2579826--3c6e1821fdef2a20b407b4e5991558d8.nii.gz/MD5E-s2579826--3c6e1821fdef2a20b407b4e5991558d8.nii.gz

SWU_4/sub-0025697/ses-2/mri/neuromorphometrics_sub-0025697_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025697/ses-2/mri/neuromorphometrics_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025697/ses-2/mri/p0sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z7/KV/MD5E-s657973--4a64b13fef1a826b8bf7d109ab6874da.nii.gz/MD5E-s657973--4a64b13fef1a826b8bf7d109ab6874da.nii.gz

SWU_4/sub-0025697/ses-2/mri/p1sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025697/ses-2/mri/p2sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7g/wF/MD5E-s452126--52b94c78e6b0369e6379dec1f87a7176.nii.gz/MD5E-s452126--52b94c78e6b0369e6379dec1f87a7176.nii.gz

SWU_4/sub-0025697/ses-2/mri/p3sub-0025697_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025697/ses-2/mri/rp1sub-0025697_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vM/9V/MD5E-s454070--0bf15fff44d36d16c139a4c1a25d8cfc.nii.gz/MD5E-s454070--0bf15fff44d36d16c139a4c1a25d8cfc.nii.gz

SWU_4/sub-0025697/ses-2/mri/rp2sub-0025697_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025697/ses-2/mri/rp3sub-0025697_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025697/ses-2/mri/t_sub-0025697_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025697/ses-2/mri/t_sub-0025697_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3k/18/MD5E-s284--09a78796ea06a62205898165891522b2.mat/MD5E-s284--09a78796ea06a62205898165891522b2.mat

SWU_4/sub-0025697/ses-2/mri/thalamus_sub-0025697_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025697/ses-2/mri/thalamus_sub-0025697_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025697/ses-2/mri/wj_sub-0025697_ses-2_run-1_T1w.nii.gz

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