[DATALAD RUNCMD] Compute LMU_1/sub-0025347/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_1/sub-0025347/ses-1/anat/sub-0025347_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_1/sub-0025347/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_1/sub-0025347/ses-1/label/catROI_sub-0025347_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p2/5j/MD5E-s57646--5d3d386a788881d627b1614a2d3b1776.mat/MD5E-s57646--5d3d386a788881d627b1614a2d3b1776.mat

LMU_1/sub-0025347/ses-1/label/catROI_sub-0025347_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J3/ZW/MD5E-s189132--dbabdb3e5f27325ac8b5272f56cef94e.xml/MD5E-s189132--dbabdb3e5f27325ac8b5272f56cef94e.xml

LMU_1/sub-0025347/ses-1/label/catROIs_sub-0025347_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4x/5j/MD5E-s120026--4ee026beedcab00712699bc266d86a41.mat/MD5E-s120026--4ee026beedcab00712699bc266d86a41.mat

LMU_1/sub-0025347/ses-1/label/catROIs_sub-0025347_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7m/fv/MD5E-s332162--4db5a24d6e5f4b4e1562bba058bba5b9.xml/MD5E-s332162--4db5a24d6e5f4b4e1562bba058bba5b9.xml

LMU_1/sub-0025347/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025347_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_1/sub-0025347/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jV/7G/MD5E-s195844--3166e4cdc484a96c4617a1b50e9471c7.nii.gz/MD5E-s195844--3166e4cdc484a96c4617a1b50e9471c7.nii.gz

LMU_1/sub-0025347/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025347_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_1/sub-0025347/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pF/Z0/MD5E-s220202--bb2214315b4d63315e9d66438d213d4a.nii.gz/MD5E-s220202--bb2214315b4d63315e9d66438d213d4a.nii.gz

LMU_1/sub-0025347/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025347_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_1/sub-0025347/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pp/G0/MD5E-s281900--624e8fefe8da78ffdba27067412a1a84.nii.gz/MD5E-s281900--624e8fefe8da78ffdba27067412a1a84.nii.gz

LMU_1/sub-0025347/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025347_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_1/sub-0025347/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pm/pq/MD5E-s312713--8aac531c6c174cb2d381406298c361da.nii.gz/MD5E-s312713--8aac531c6c174cb2d381406298c361da.nii.gz

LMU_1/sub-0025347/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025347_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_1/sub-0025347/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kP/G2/MD5E-s30534--f1ed05fbf9a6c12570e9afe4619c839b.nii.gz/MD5E-s30534--f1ed05fbf9a6c12570e9afe4619c839b.nii.gz

LMU_1/sub-0025347/ses-1/mri/aal3_sub-0025347_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_1/sub-0025347/ses-1/mri/aal3_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6w/fW/MD5E-s228080--34cf749c74e75bffa3a49c653ed0fde8.nii.gz/MD5E-s228080--34cf749c74e75bffa3a49c653ed0fde8.nii.gz

LMU_1/sub-0025347/ses-1/mri/anatomy3_sub-0025347_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_1/sub-0025347/ses-1/mri/anatomy3_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K7/K3/MD5E-s159801--e72a96e7a94d09b58094ba481b9b1a3f.nii.gz/MD5E-s159801--e72a96e7a94d09b58094ba481b9b1a3f.nii.gz

LMU_1/sub-0025347/ses-1/mri/anon_misub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/Xm/MD5E-s5236824--7a5bfa559dea8fd0b5a859e091a68de5.nii.gz/MD5E-s5236824--7a5bfa559dea8fd0b5a859e091a68de5.nii.gz

LMU_1/sub-0025347/ses-1/mri/anon_msub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/W0/MD5E-s12569159--923459b9a7c1c9f3b1380ee9a91d6ab5.nii.gz/MD5E-s12569159--923459b9a7c1c9f3b1380ee9a91d6ab5.nii.gz

LMU_1/sub-0025347/ses-1/mri/cat_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8k/1g/MD5E-s115926--ffd3dc915a81b58e537085b2cc831bd9.nii.gz/MD5E-s115926--ffd3dc915a81b58e537085b2cc831bd9.nii.gz

LMU_1/sub-0025347/ses-1/mri/cobra_sub-0025347_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_1/sub-0025347/ses-1/mri/cobra_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/zj/MD5E-s60415--e9a0088d704b053a99966028fe6e57bb.nii.gz/MD5E-s60415--e9a0088d704b053a99966028fe6e57bb.nii.gz

LMU_1/sub-0025347/ses-1/mri/hammers_sub-0025347_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_1/sub-0025347/ses-1/mri/hammers_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V0/6w/MD5E-s175182--df964465d1720559d1b7315353b4b549.nii.gz/MD5E-s175182--df964465d1720559d1b7315353b4b549.nii.gz

LMU_1/sub-0025347/ses-1/mri/ibsr_sub-0025347_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_1/sub-0025347/ses-1/mri/ibsr_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gK/7v/MD5E-s182285--aee7e09d6719e3176525b592314a3b16.nii.gz/MD5E-s182285--aee7e09d6719e3176525b592314a3b16.nii.gz

LMU_1/sub-0025347/ses-1/mri/it_sub-0025347_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9M/x2/MD5E-s282--b4c4d07e71ebc52439e3c12b670449df.mat/MD5E-s282--b4c4d07e71ebc52439e3c12b670449df.mat

LMU_1/sub-0025347/ses-1/mri/it_sub-0025347_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kw/f0/MD5E-s282--8ae631e0c42cb91591248db2ba9b88ff.mat/MD5E-s282--8ae631e0c42cb91591248db2ba9b88ff.mat

LMU_1/sub-0025347/ses-1/mri/iy_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xP/00/MD5E-s51123840--1831b0ea2d37a7d1810611de0e4cfe76.nii.gz/MD5E-s51123840--1831b0ea2d37a7d1810611de0e4cfe76.nii.gz

LMU_1/sub-0025347/ses-1/mri/julichbrain_sub-0025347_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_1/sub-0025347/ses-1/mri/julichbrain_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/43/3x/MD5E-s234311--b37944224ee184f7e3a367e55053fb87.nii.gz/MD5E-s234311--b37944224ee184f7e3a367e55053fb87.nii.gz

LMU_1/sub-0025347/ses-1/mri/lpba40_sub-0025347_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_1/sub-0025347/ses-1/mri/lpba40_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025347/ses-1/mri/m0wp1sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3w/7V/MD5E-s2579792--6003cc96a6a9cee7163f0a5113126873.nii.gz/MD5E-s2579792--6003cc96a6a9cee7163f0a5113126873.nii.gz

LMU_1/sub-0025347/ses-1/mri/m0wp2sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/f8/MD5E-s2278210--4de1925d4cddafc000e74af78d8e933a.nii.gz/MD5E-s2278210--4de1925d4cddafc000e74af78d8e933a.nii.gz

LMU_1/sub-0025347/ses-1/mri/m0wp3sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zM/0Z/MD5E-s2457850--db7bd974566e7a30ac48d359c09daeeb.nii.gz/MD5E-s2457850--db7bd974566e7a30ac48d359c09daeeb.nii.gz

LMU_1/sub-0025347/ses-1/mri/mori_sub-0025347_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_1/sub-0025347/ses-1/mri/mori_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/pp/MD5E-s204099--b2bcc13d992d87fd80acdbe610b5cc1b.nii.gz/MD5E-s204099--b2bcc13d992d87fd80acdbe610b5cc1b.nii.gz

LMU_1/sub-0025347/ses-1/mri/mwp1sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gQ/PV/MD5E-s2586980--009b558a8173cdda41487c31fd6d13d1.nii.gz/MD5E-s2586980--009b558a8173cdda41487c31fd6d13d1.nii.gz

LMU_1/sub-0025347/ses-1/mri/mwp2sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WQ/j0/MD5E-s2278699--f63fd6e57ebdd85ce09f13255402cb1e.nii.gz/MD5E-s2278699--f63fd6e57ebdd85ce09f13255402cb1e.nii.gz

LMU_1/sub-0025347/ses-1/mri/mwp3sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025347/ses-1/mri/neuromorphometrics_sub-0025347_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_1/sub-0025347/ses-1/mri/neuromorphometrics_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025347/ses-1/mri/p0sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1Q/Mv/MD5E-s706380--48b2f9564b65017be7d17a59fd9ea7f9.nii.gz/MD5E-s706380--48b2f9564b65017be7d17a59fd9ea7f9.nii.gz

LMU_1/sub-0025347/ses-1/mri/p1sub-0025347_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025347/ses-1/mri/p2sub-0025347_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025347/ses-1/mri/p3sub-0025347_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025347/ses-1/mri/rp1sub-0025347_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025347/ses-1/mri/rp2sub-0025347_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025347/ses-1/mri/rp3sub-0025347_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025347/ses-1/mri/t_sub-0025347_ses-1_run-1_T1w_affine_reorient.mat

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LMU_1/sub-0025347/ses-1/mri/t_sub-0025347_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_1/sub-0025347/ses-1/mri/thalamus_sub-0025347_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_1/sub-0025347/ses-1/mri/thalamus_sub-0025347_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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