[DATALAD RUNCMD] Compute SWU_4/sub-0025676/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025676/ses-1/anat/sub-0025676_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025676/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025676/ses-1/label/catROI_sub-0025676_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WZ/Z0/MD5E-s57798--e9b23ec847ae427ed7b5074b68d8cc7a.mat/MD5E-s57798--e9b23ec847ae427ed7b5074b68d8cc7a.mat

SWU_4/sub-0025676/ses-1/label/catROI_sub-0025676_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0f/qV/MD5E-s188692--5c820a7f9a49808ba805dd708b6e1461.xml/MD5E-s188692--5c820a7f9a49808ba805dd708b6e1461.xml

SWU_4/sub-0025676/ses-1/label/catROIs_sub-0025676_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/xX/MD5E-s120059--9d087d5f9c9cd1db02e3a84d452eea8e.mat/MD5E-s120059--9d087d5f9c9cd1db02e3a84d452eea8e.mat

SWU_4/sub-0025676/ses-1/label/catROIs_sub-0025676_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4w/X9/MD5E-s332069--75430ba37bc1fa088e8c9bf5d7667d68.xml/MD5E-s332069--75430ba37bc1fa088e8c9bf5d7667d68.xml

SWU_4/sub-0025676/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025676_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025676/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J4/Qg/MD5E-s166117--8b3a4ca65116a7145adb29be3a1b2b22.nii.gz/MD5E-s166117--8b3a4ca65116a7145adb29be3a1b2b22.nii.gz

SWU_4/sub-0025676/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025676_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025676/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/wM/MD5E-s185273--7dab665a44ae1bc2b29ed77eb882d9f8.nii.gz/MD5E-s185273--7dab665a44ae1bc2b29ed77eb882d9f8.nii.gz

SWU_4/sub-0025676/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025676_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025676/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wf/0V/MD5E-s250391--37eae112565cc81cf1aeb657b96111b5.nii.gz/MD5E-s250391--37eae112565cc81cf1aeb657b96111b5.nii.gz

SWU_4/sub-0025676/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025676_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025676/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9z/QG/MD5E-s277590--10f37f77ded3300719067c208f56af44.nii.gz/MD5E-s277590--10f37f77ded3300719067c208f56af44.nii.gz

SWU_4/sub-0025676/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025676_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025676/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kj/FV/MD5E-s25596--599ffceb0ae92df0d3fb17bc84c1e735.nii.gz/MD5E-s25596--599ffceb0ae92df0d3fb17bc84c1e735.nii.gz

SWU_4/sub-0025676/ses-1/mri/aal3_sub-0025676_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025676/ses-1/mri/aal3_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/Zv/MD5E-s187898--5057ee14c37cfaf272770d21cbc431f8.nii.gz/MD5E-s187898--5057ee14c37cfaf272770d21cbc431f8.nii.gz

SWU_4/sub-0025676/ses-1/mri/anatomy3_sub-0025676_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025676/ses-1/mri/anatomy3_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mq/Xp/MD5E-s135020--afd2943a139232c04c299385089cdad8.nii.gz/MD5E-s135020--afd2943a139232c04c299385089cdad8.nii.gz

SWU_4/sub-0025676/ses-1/mri/anon_misub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/97/5k/MD5E-s8695235--e5cbfe64cccc879c640b664911140832.nii.gz/MD5E-s8695235--e5cbfe64cccc879c640b664911140832.nii.gz

SWU_4/sub-0025676/ses-1/mri/anon_msub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/39/wx/MD5E-s8818223--6662a245fe7d76deb68072b373434a4d.nii.gz/MD5E-s8818223--6662a245fe7d76deb68072b373434a4d.nii.gz

SWU_4/sub-0025676/ses-1/mri/cat_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gj/4Z/MD5E-s100918--7e6a83e7716c0b7e2a3ff107dd5f76f8.nii.gz/MD5E-s100918--7e6a83e7716c0b7e2a3ff107dd5f76f8.nii.gz

SWU_4/sub-0025676/ses-1/mri/cobra_sub-0025676_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025676/ses-1/mri/cobra_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4M/gv/MD5E-s48675--8fc3709e16e201b9f859a6fa2218daff.nii.gz/MD5E-s48675--8fc3709e16e201b9f859a6fa2218daff.nii.gz

SWU_4/sub-0025676/ses-1/mri/hammers_sub-0025676_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025676/ses-1/mri/hammers_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v8/pq/MD5E-s147212--d1a460260bd84209794f754165c404bc.nii.gz/MD5E-s147212--d1a460260bd84209794f754165c404bc.nii.gz

SWU_4/sub-0025676/ses-1/mri/ibsr_sub-0025676_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025676/ses-1/mri/ibsr_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z2/46/MD5E-s156005--d2e96b3f13db366941c06eef522ad564.nii.gz/MD5E-s156005--d2e96b3f13db366941c06eef522ad564.nii.gz

SWU_4/sub-0025676/ses-1/mri/it_sub-0025676_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wm/fF/MD5E-s283--6bb33717c380781d784d870ac042d6e7.mat/MD5E-s283--6bb33717c380781d784d870ac042d6e7.mat

SWU_4/sub-0025676/ses-1/mri/it_sub-0025676_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/54/2z/MD5E-s283--d36598f68beb9ddfc86870e473e8bdbd.mat/MD5E-s283--d36598f68beb9ddfc86870e473e8bdbd.mat

SWU_4/sub-0025676/ses-1/mri/iy_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gk/7f/MD5E-s47387385--3c0947bf9f1649fb32c2eab2eb2fe67b.nii.gz/MD5E-s47387385--3c0947bf9f1649fb32c2eab2eb2fe67b.nii.gz

SWU_4/sub-0025676/ses-1/mri/julichbrain_sub-0025676_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025676/ses-1/mri/julichbrain_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pj/Fq/MD5E-s198623--1d0ee22958a8ace961a3df8aa3f3a876.nii.gz/MD5E-s198623--1d0ee22958a8ace961a3df8aa3f3a876.nii.gz

SWU_4/sub-0025676/ses-1/mri/lpba40_sub-0025676_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025676/ses-1/mri/lpba40_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4w/v1/MD5E-s143640--a63fb5d2a27899ccf5ac59f32af2c386.nii.gz/MD5E-s143640--a63fb5d2a27899ccf5ac59f32af2c386.nii.gz

SWU_4/sub-0025676/ses-1/mri/m0wp1sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vV/jV/MD5E-s2578985--c37d82e46bc424c7a308e5f612da32e5.nii.gz/MD5E-s2578985--c37d82e46bc424c7a308e5f612da32e5.nii.gz

SWU_4/sub-0025676/ses-1/mri/m0wp2sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V4/px/MD5E-s2312409--7df4f97139c46367fc089d2d34e2e154.nii.gz/MD5E-s2312409--7df4f97139c46367fc089d2d34e2e154.nii.gz

SWU_4/sub-0025676/ses-1/mri/m0wp3sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Z/x5/MD5E-s2548898--c00fb5233441bae8a07d306f6d58ef15.nii.gz/MD5E-s2548898--c00fb5233441bae8a07d306f6d58ef15.nii.gz

SWU_4/sub-0025676/ses-1/mri/mori_sub-0025676_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025676/ses-1/mri/mori_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p5/3p/MD5E-s174681--1f6f5890fa58539c34153390defba34d.nii.gz/MD5E-s174681--1f6f5890fa58539c34153390defba34d.nii.gz

SWU_4/sub-0025676/ses-1/mri/mwp1sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mG/X7/MD5E-s2582050--0df2f5681d6c5001542d7c3fac349907.nii.gz/MD5E-s2582050--0df2f5681d6c5001542d7c3fac349907.nii.gz

SWU_4/sub-0025676/ses-1/mri/mwp2sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3z/K6/MD5E-s2307776--d09b1f18c06670a43aa348396c37a854.nii.gz/MD5E-s2307776--d09b1f18c06670a43aa348396c37a854.nii.gz

SWU_4/sub-0025676/ses-1/mri/mwp3sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/60/MD5E-s2545629--7e4ea2081e3147c0c5cf63a7dd71084c.nii.gz/MD5E-s2545629--7e4ea2081e3147c0c5cf63a7dd71084c.nii.gz

SWU_4/sub-0025676/ses-1/mri/neuromorphometrics_sub-0025676_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025676/ses-1/mri/neuromorphometrics_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V1/6j/MD5E-s199031--f4f28ad26271837e6b2946f3a2a99271.nii.gz/MD5E-s199031--f4f28ad26271837e6b2946f3a2a99271.nii.gz

SWU_4/sub-0025676/ses-1/mri/p0sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FJ/wz/MD5E-s656010--15789d86369dd94fc236a5ac7875c126.nii.gz/MD5E-s656010--15789d86369dd94fc236a5ac7875c126.nii.gz

SWU_4/sub-0025676/ses-1/mri/p1sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mF/Kx/MD5E-s697246--18756f125fcbfe86ac4db1a60a330734.nii.gz/MD5E-s697246--18756f125fcbfe86ac4db1a60a330734.nii.gz

SWU_4/sub-0025676/ses-1/mri/p2sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pp/6M/MD5E-s459381--4fa6842ca5ed8861efbd152d019b3541.nii.gz/MD5E-s459381--4fa6842ca5ed8861efbd152d019b3541.nii.gz

SWU_4/sub-0025676/ses-1/mri/p3sub-0025676_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025676/ses-1/mri/rp1sub-0025676_ses-1_run-1_T1w_affine.nii.gz

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+../../../../.git/annex/objects/8k/Fz/MD5E-s451201--43583f8d37c451a960a4c7ad12c039a3.nii.gz/MD5E-s451201--43583f8d37c451a960a4c7ad12c039a3.nii.gz

SWU_4/sub-0025676/ses-1/mri/rp2sub-0025676_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025676/ses-1/mri/rp3sub-0025676_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q4/z6/MD5E-s293921--e2871f5a9d6f4c8591517de0ad423d25.nii.gz/MD5E-s293921--e2871f5a9d6f4c8591517de0ad423d25.nii.gz

SWU_4/sub-0025676/ses-1/mri/t_sub-0025676_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/41/VZ/MD5E-s283--dd87e4e4ea4fb19e1b8ffe4086f53cab.mat/MD5E-s283--dd87e4e4ea4fb19e1b8ffe4086f53cab.mat

SWU_4/sub-0025676/ses-1/mri/t_sub-0025676_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q0/Vg/MD5E-s283--6a8d2d5b9c57c35ab64e33770076f1a9.mat/MD5E-s283--6a8d2d5b9c57c35ab64e33770076f1a9.mat

SWU_4/sub-0025676/ses-1/mri/thalamus_sub-0025676_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025676/ses-1/mri/thalamus_sub-0025676_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x5/FV/MD5E-s16489--4f6574dc886e7b3741cb0b4f44f197e6.nii.gz/MD5E-s16489--4f6574dc886e7b3741cb0b4f44f197e6.nii.gz

SWU_4/sub-0025676/ses-1/mri/wj_sub-0025676_ses-1_run-1_T1w.nii.gz

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