[DATALAD RUNCMD] Compute IPCAS_8/sub-0025597/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_8/sub-0025597/ses-1/anat/sub-0025597_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_8/sub-0025597/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_8/sub-0025597/ses-1/label/catROI_sub-0025597_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p1/v1/MD5E-s61281--d4fa9a5ba559001f6065b9166d79bdd5.mat/MD5E-s61281--d4fa9a5ba559001f6065b9166d79bdd5.mat

IPCAS_8/sub-0025597/ses-1/label/catROI_sub-0025597_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/68/k8/MD5E-s188733--8b6357cdaa850aeb0df05ac706afe8ee.xml/MD5E-s188733--8b6357cdaa850aeb0df05ac706afe8ee.xml

IPCAS_8/sub-0025597/ses-1/label/catROIs_sub-0025597_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fp/zQ/MD5E-s120017--916c336da603606abae50f23b5b369e9.mat/MD5E-s120017--916c336da603606abae50f23b5b369e9.mat

IPCAS_8/sub-0025597/ses-1/label/catROIs_sub-0025597_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/86/f1/MD5E-s332208--eae6efbf0a608fa1cd3fc812ea069643.xml/MD5E-s332208--eae6efbf0a608fa1cd3fc812ea069643.xml

IPCAS_8/sub-0025597/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025597_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_8/sub-0025597/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wG/Jp/MD5E-s155851--408e03b560879c752cf1f213d8bf101c.nii.gz/MD5E-s155851--408e03b560879c752cf1f213d8bf101c.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025597_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_8/sub-0025597/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/86/Wp/MD5E-s173304--e47d1220571512dfa347fd0a9a75d8ae.nii.gz/MD5E-s173304--e47d1220571512dfa347fd0a9a75d8ae.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025597_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_8/sub-0025597/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/mz/MD5E-s230899--415608aac529964c8102364a96738a51.nii.gz/MD5E-s230899--415608aac529964c8102364a96738a51.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025597_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_8/sub-0025597/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7G/5P/MD5E-s256648--b05edd53b396f804fb0f0ddd056bcfca.nii.gz/MD5E-s256648--b05edd53b396f804fb0f0ddd056bcfca.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025597_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IPCAS_8/sub-0025597/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zv/mm/MD5E-s19688--bbcef68117a8abbcce2c315e004ef228.nii.gz/MD5E-s19688--bbcef68117a8abbcce2c315e004ef228.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/aal3_sub-0025597_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_8/sub-0025597/ses-1/mri/aal3_sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fp/KX/MD5E-s174336--96a61273de819e5c7932c070b454ac1d.nii.gz/MD5E-s174336--96a61273de819e5c7932c070b454ac1d.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/anatomy3_sub-0025597_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IPCAS_8/sub-0025597/ses-1/mri/anatomy3_sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6m/Vz/MD5E-s123981--d906bc231d62ff2979daab99c66789f1.nii.gz/MD5E-s123981--d906bc231d62ff2979daab99c66789f1.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/anon_misub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4v/GP/MD5E-s4531806--b4b859fb0127a4bd982692afe5132442.nii.gz/MD5E-s4531806--b4b859fb0127a4bd982692afe5132442.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/anon_msub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ww/7w/MD5E-s7578855--a6a8d88d73a71f5d70a02e6afd71ca25.nii.gz/MD5E-s7578855--a6a8d88d73a71f5d70a02e6afd71ca25.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/cat_sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/57/GZ/MD5E-s98455--6ced6ee3154f6775d26a01becc2daff8.nii.gz/MD5E-s98455--6ced6ee3154f6775d26a01becc2daff8.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/cobra_sub-0025597_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_8/sub-0025597/ses-1/mri/cobra_sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qg/59/MD5E-s42602--facc9ab0e2cf9d1dc0bca71cf05cdd91.nii.gz/MD5E-s42602--facc9ab0e2cf9d1dc0bca71cf05cdd91.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/hammers_sub-0025597_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_8/sub-0025597/ses-1/mri/hammers_sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6K/kk/MD5E-s137350--fb0f3816414364b2e9aefac67a76f628.nii.gz/MD5E-s137350--fb0f3816414364b2e9aefac67a76f628.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/ibsr_sub-0025597_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_8/sub-0025597/ses-1/mri/ibsr_sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xj/m3/MD5E-s145229--a059a49773dcf4923f5c124193769baf.nii.gz/MD5E-s145229--a059a49773dcf4923f5c124193769baf.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/it_sub-0025597_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M3/xG/MD5E-s283--d5934e8de11ad6e1321c1b22342eb55a.mat/MD5E-s283--d5934e8de11ad6e1321c1b22342eb55a.mat

IPCAS_8/sub-0025597/ses-1/mri/it_sub-0025597_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XW/32/MD5E-s284--d58c10a1f74e88bcf42230fa7e1e8ad2.mat/MD5E-s284--d58c10a1f74e88bcf42230fa7e1e8ad2.mat

IPCAS_8/sub-0025597/ses-1/mri/iy_sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/wJ/MD5E-s38478706--bece094518826583bdf2238e44fb91fa.nii.gz/MD5E-s38478706--bece094518826583bdf2238e44fb91fa.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/julichbrain_sub-0025597_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

IPCAS_8/sub-0025597/ses-1/mri/julichbrain_sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5q/Q0/MD5E-s186516--fed50247581ef5d81888c696b35488bf.nii.gz/MD5E-s186516--fed50247581ef5d81888c696b35488bf.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/lpba40_sub-0025597_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_8/sub-0025597/ses-1/mri/lpba40_sub-0025597_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/k6/6w/MD5E-s135187--b64dd0ee8d1184326f04fd20a8e8c208.nii.gz/MD5E-s135187--b64dd0ee8d1184326f04fd20a8e8c208.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/m0wp1sub-0025597_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025597/ses-1/mri/m0wp2sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vZ/gZ/MD5E-s2291545--b95070a7e43d3b1539f83dd51ea0e9aa.nii.gz/MD5E-s2291545--b95070a7e43d3b1539f83dd51ea0e9aa.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/m0wp3sub-0025597_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025597/ses-1/mri/mori_sub-0025597_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

IPCAS_8/sub-0025597/ses-1/mri/mori_sub-0025597_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025597/ses-1/mri/mwp1sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KG/JQ/MD5E-s2580112--1e8383091690989dbbc28c9bebcd8098.nii.gz/MD5E-s2580112--1e8383091690989dbbc28c9bebcd8098.nii.gz

IPCAS_8/sub-0025597/ses-1/mri/mwp2sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_8/sub-0025597/ses-1/mri/mwp3sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_8/sub-0025597/ses-1/mri/neuromorphometrics_sub-0025597_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_8/sub-0025597/ses-1/mri/neuromorphometrics_sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_8/sub-0025597/ses-1/mri/p0sub-0025597_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025597/ses-1/mri/p1sub-0025597_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025597/ses-1/mri/p2sub-0025597_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025597/ses-1/mri/p3sub-0025597_ses-1_run-1_T1w.nii.gz

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IPCAS_8/sub-0025597/ses-1/mri/rp1sub-0025597_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_8/sub-0025597/ses-1/mri/rp2sub-0025597_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_8/sub-0025597/ses-1/mri/rp3sub-0025597_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_8/sub-0025597/ses-1/mri/t_sub-0025597_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_8/sub-0025597/ses-1/mri/t_sub-0025597_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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IPCAS_8/sub-0025597/ses-1/mri/thalamus_sub-0025597_ses-1_run-1_T1w.csv

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IPCAS_8/sub-0025597/ses-1/mri/thalamus_sub-0025597_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_8/sub-0025597/ses-1/mri/wj_sub-0025597_ses-1_run-1_T1w.nii.gz

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