[DATALAD RUNCMD] Compute SWU_4/sub-0025656/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025656/ses-1/anat/sub-0025656_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025656/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025656/ses-1/label/catROI_sub-0025656_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kz/jZ/MD5E-s57854--46b85531916107fc722cd7462b9548d0.mat/MD5E-s57854--46b85531916107fc722cd7462b9548d0.mat

SWU_4/sub-0025656/ses-1/label/catROI_sub-0025656_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F1/6W/MD5E-s188808--1fdb4c1742bd0d99081daa400cbc54e3.xml/MD5E-s188808--1fdb4c1742bd0d99081daa400cbc54e3.xml

SWU_4/sub-0025656/ses-1/label/catROIs_sub-0025656_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wp/ww/MD5E-s120013--00ef88d3a0230b7ac5092063a44a7380.mat/MD5E-s120013--00ef88d3a0230b7ac5092063a44a7380.mat

SWU_4/sub-0025656/ses-1/label/catROIs_sub-0025656_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/48/FW/MD5E-s332132--0f38d7c2a79444040bae24e9fe42b2e0.xml/MD5E-s332132--0f38d7c2a79444040bae24e9fe42b2e0.xml

SWU_4/sub-0025656/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025656_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025656/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/Xz/MD5E-s168001--fbda8b3e5169670d651dbf009005b61b.nii.gz/MD5E-s168001--fbda8b3e5169670d651dbf009005b61b.nii.gz

SWU_4/sub-0025656/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025656_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025656/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pJ/ZQ/MD5E-s187215--cb00b07431e5b623f4d9b516c081d93b.nii.gz/MD5E-s187215--cb00b07431e5b623f4d9b516c081d93b.nii.gz

SWU_4/sub-0025656/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025656_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025656/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/vp/MD5E-s253237--739a8e20366f01cbf04ce744e7c0dc50.nii.gz/MD5E-s253237--739a8e20366f01cbf04ce744e7c0dc50.nii.gz

SWU_4/sub-0025656/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025656_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025656/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/MX/MD5E-s279891--224ee39854dc6c983e22161e2ccb2dc8.nii.gz/MD5E-s279891--224ee39854dc6c983e22161e2ccb2dc8.nii.gz

SWU_4/sub-0025656/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025656_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025656/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jq/00/MD5E-s25293--a4739a95906b51351cdf69204e303e7e.nii.gz/MD5E-s25293--a4739a95906b51351cdf69204e303e7e.nii.gz

SWU_4/sub-0025656/ses-1/mri/aal3_sub-0025656_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025656/ses-1/mri/aal3_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xZ/70/MD5E-s189027--52cb7d4de0ff57a620d78fac61ecfedc.nii.gz/MD5E-s189027--52cb7d4de0ff57a620d78fac61ecfedc.nii.gz

SWU_4/sub-0025656/ses-1/mri/anatomy3_sub-0025656_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025656/ses-1/mri/anatomy3_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pw/vF/MD5E-s137631--033d47e41fcc55026a4add5301112582.nii.gz/MD5E-s137631--033d47e41fcc55026a4add5301112582.nii.gz

SWU_4/sub-0025656/ses-1/mri/anon_misub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pj/pq/MD5E-s8649219--f752bdbdf150bb19f4604724ed3504fd.nii.gz/MD5E-s8649219--f752bdbdf150bb19f4604724ed3504fd.nii.gz

SWU_4/sub-0025656/ses-1/mri/anon_msub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/40/x5/MD5E-s8491617--dbe050e79add73cf799bb1ad97ab3608.nii.gz/MD5E-s8491617--dbe050e79add73cf799bb1ad97ab3608.nii.gz

SWU_4/sub-0025656/ses-1/mri/cat_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qj/Pq/MD5E-s101068--717e27d11ffe990904db6a79eba587d3.nii.gz/MD5E-s101068--717e27d11ffe990904db6a79eba587d3.nii.gz

SWU_4/sub-0025656/ses-1/mri/cobra_sub-0025656_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025656/ses-1/mri/cobra_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9v/Zq/MD5E-s49133--90bc6f96ba957aa7af0b42598fabc61f.nii.gz/MD5E-s49133--90bc6f96ba957aa7af0b42598fabc61f.nii.gz

SWU_4/sub-0025656/ses-1/mri/hammers_sub-0025656_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025656/ses-1/mri/hammers_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GG/fm/MD5E-s148456--343632d256e29eac5aa3fe0f9ede8b04.nii.gz/MD5E-s148456--343632d256e29eac5aa3fe0f9ede8b04.nii.gz

SWU_4/sub-0025656/ses-1/mri/ibsr_sub-0025656_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025656/ses-1/mri/ibsr_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9g/mF/MD5E-s157424--6574720352be1d8d09000551f2eaa882.nii.gz/MD5E-s157424--6574720352be1d8d09000551f2eaa882.nii.gz

SWU_4/sub-0025656/ses-1/mri/it_sub-0025656_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p7/KV/MD5E-s282--84e573c305147abb834a8fa289bb93b0.mat/MD5E-s282--84e573c305147abb834a8fa289bb93b0.mat

SWU_4/sub-0025656/ses-1/mri/it_sub-0025656_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g4/fg/MD5E-s282--9889ff382e6e2d0cdb1f0363f054ce08.mat/MD5E-s282--9889ff382e6e2d0cdb1f0363f054ce08.mat

SWU_4/sub-0025656/ses-1/mri/iy_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/91/1z/MD5E-s47302066--1bd73b4513b77c2c30a47d203967c9ea.nii.gz/MD5E-s47302066--1bd73b4513b77c2c30a47d203967c9ea.nii.gz

SWU_4/sub-0025656/ses-1/mri/julichbrain_sub-0025656_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025656/ses-1/mri/julichbrain_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/7k/MD5E-s200934--56fbdf63a89f6b1341cc988b2e81451a.nii.gz/MD5E-s200934--56fbdf63a89f6b1341cc988b2e81451a.nii.gz

SWU_4/sub-0025656/ses-1/mri/lpba40_sub-0025656_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025656/ses-1/mri/lpba40_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1x/3z/MD5E-s145472--e2b83de1e88ed481d8aa651a0120109d.nii.gz/MD5E-s145472--e2b83de1e88ed481d8aa651a0120109d.nii.gz

SWU_4/sub-0025656/ses-1/mri/m0wp1sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/P9/MD5E-s2590339--8bc279ff2ad1627eaaa912af4301ea4d.nii.gz/MD5E-s2590339--8bc279ff2ad1627eaaa912af4301ea4d.nii.gz

SWU_4/sub-0025656/ses-1/mri/m0wp2sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3j/9w/MD5E-s2307786--5ef7346c01d95fd9c0a558c687f09433.nii.gz/MD5E-s2307786--5ef7346c01d95fd9c0a558c687f09433.nii.gz

SWU_4/sub-0025656/ses-1/mri/m0wp3sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/P4/MD5E-s2558817--dd42fde46fad969cdbe8315457e63f24.nii.gz/MD5E-s2558817--dd42fde46fad969cdbe8315457e63f24.nii.gz

SWU_4/sub-0025656/ses-1/mri/mori_sub-0025656_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025656/ses-1/mri/mori_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kP/p3/MD5E-s174869--2e748ef79fb111abea0d3ff417c2b155.nii.gz/MD5E-s174869--2e748ef79fb111abea0d3ff417c2b155.nii.gz

SWU_4/sub-0025656/ses-1/mri/mwp1sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xp/Fm/MD5E-s2592322--d90d3260f168a5e912bbc68d82683aaf.nii.gz/MD5E-s2592322--d90d3260f168a5e912bbc68d82683aaf.nii.gz

SWU_4/sub-0025656/ses-1/mri/mwp2sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fp/2X/MD5E-s2303677--3c932fc0349f8b7e9c27f525c3b8dd32.nii.gz/MD5E-s2303677--3c932fc0349f8b7e9c27f525c3b8dd32.nii.gz

SWU_4/sub-0025656/ses-1/mri/mwp3sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9k/6g/MD5E-s2555141--f916831512a496f0a21d2bab77513dd4.nii.gz/MD5E-s2555141--f916831512a496f0a21d2bab77513dd4.nii.gz

SWU_4/sub-0025656/ses-1/mri/neuromorphometrics_sub-0025656_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025656/ses-1/mri/neuromorphometrics_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5v/wV/MD5E-s202293--24c07014bc4739588cba32f2618feca8.nii.gz/MD5E-s202293--24c07014bc4739588cba32f2618feca8.nii.gz

SWU_4/sub-0025656/ses-1/mri/p0sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WX/2X/MD5E-s654240--ac5b4df67c083c3fb37fe2b49719dac7.nii.gz/MD5E-s654240--ac5b4df67c083c3fb37fe2b49719dac7.nii.gz

SWU_4/sub-0025656/ses-1/mri/p1sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qM/Pq/MD5E-s697126--b0c69c129c892bbe78646df5989da085.nii.gz/MD5E-s697126--b0c69c129c892bbe78646df5989da085.nii.gz

SWU_4/sub-0025656/ses-1/mri/p2sub-0025656_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/V8/4W/MD5E-s449805--86c207edcc4cf6cdbf8b5ec4f34ec5de.nii.gz/MD5E-s449805--86c207edcc4cf6cdbf8b5ec4f34ec5de.nii.gz

SWU_4/sub-0025656/ses-1/mri/p3sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pk/29/MD5E-s401969--d13a03f6941e145c50a5c082b05f040c.nii.gz/MD5E-s401969--d13a03f6941e145c50a5c082b05f040c.nii.gz

SWU_4/sub-0025656/ses-1/mri/rp1sub-0025656_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025656/ses-1/mri/rp2sub-0025656_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025656/ses-1/mri/rp3sub-0025656_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025656/ses-1/mri/t_sub-0025656_ses-1_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025656/ses-1/mri/t_sub-0025656_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025656/ses-1/mri/thalamus_sub-0025656_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025656/ses-1/mri/thalamus_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025656/ses-1/mri/wj_sub-0025656_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025656/ses-1/mri/wmisub-0025656_ses-1_run-1_T1w.nii.gz

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