[DATALAD RUNCMD] Compute UWM/sub-0027266/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/UWM/sub-0027266/ses-1/anat/sub-0027266_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "UWM/sub-0027266/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UWM/sub-0027266/ses-1/label/catROI_sub-0027266_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f7/Zg/MD5E-s57626--68c1d21e4450950600d2f84a65824e68.mat/MD5E-s57626--68c1d21e4450950600d2f84a65824e68.mat

UWM/sub-0027266/ses-1/label/catROI_sub-0027266_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z0/p4/MD5E-s189069--894975d7aa0276cf6f3de0d7e01b1238.xml/MD5E-s189069--894975d7aa0276cf6f3de0d7e01b1238.xml

UWM/sub-0027266/ses-1/label/catROIs_sub-0027266_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mx/gJ/MD5E-s120124--1ecc3f5065272bafec812f78858077f2.mat/MD5E-s120124--1ecc3f5065272bafec812f78858077f2.mat

UWM/sub-0027266/ses-1/label/catROIs_sub-0027266_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9K/4J/MD5E-s332167--dc3146f7f615661e5f9ecefbd3f6adcc.xml/MD5E-s332167--dc3146f7f615661e5f9ecefbd3f6adcc.xml

UWM/sub-0027266/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027266_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UWM/sub-0027266/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027266_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6V/pP/MD5E-s167560--9ddc18e08808d51c81acbbd4ba2e126f.nii.gz/MD5E-s167560--9ddc18e08808d51c81acbbd4ba2e126f.nii.gz

UWM/sub-0027266/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027266_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UWM/sub-0027266/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027266_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XM/Gw/MD5E-s188404--1cad3ada34250489d9b3b9daf4b8e2a3.nii.gz/MD5E-s188404--1cad3ada34250489d9b3b9daf4b8e2a3.nii.gz

UWM/sub-0027266/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027266_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UWM/sub-0027266/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027266_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KG/x8/MD5E-s238258--49f31470679405c8dbd9dee286727177.nii.gz/MD5E-s238258--49f31470679405c8dbd9dee286727177.nii.gz

UWM/sub-0027266/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027266_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UWM/sub-0027266/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027266_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QW/K9/MD5E-s265855--e8ddf032f9d45074093337aee5a7489f.nii.gz/MD5E-s265855--e8ddf032f9d45074093337aee5a7489f.nii.gz

UWM/sub-0027266/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027266_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UWM/sub-0027266/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027266_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9g/ZM/MD5E-s22703--2bd5c10c517a76a8fdc94e31d9875ea9.nii.gz/MD5E-s22703--2bd5c10c517a76a8fdc94e31d9875ea9.nii.gz

UWM/sub-0027266/ses-1/mri/aal3_sub-0027266_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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UWM/sub-0027266/ses-1/mri/aal3_sub-0027266_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fF/Zx/MD5E-s190818--f2a48214a45c7363704cda30a75b791a.nii.gz/MD5E-s190818--f2a48214a45c7363704cda30a75b791a.nii.gz

UWM/sub-0027266/ses-1/mri/anatomy3_sub-0027266_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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UWM/sub-0027266/ses-1/mri/anatomy3_sub-0027266_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f8/3q/MD5E-s135293--97862a88ce3bb7fb76a20970df233f01.nii.gz/MD5E-s135293--97862a88ce3bb7fb76a20970df233f01.nii.gz

UWM/sub-0027266/ses-1/mri/anon_misub-0027266_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/01/38/MD5E-s4848301--d1b7765a69422ca3397129b893ffb011.nii.gz/MD5E-s4848301--d1b7765a69422ca3397129b893ffb011.nii.gz

UWM/sub-0027266/ses-1/mri/anon_msub-0027266_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2x/Vz/MD5E-s9907103--59aab95241f7a6623719f33ec67b804f.nii.gz/MD5E-s9907103--59aab95241f7a6623719f33ec67b804f.nii.gz

UWM/sub-0027266/ses-1/mri/cat_sub-0027266_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027266/ses-1/mri/cobra_sub-0027266_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UWM/sub-0027266/ses-1/mri/cobra_sub-0027266_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M8/jM/MD5E-s46659--09bd94bef98018532f719847f9016343.nii.gz/MD5E-s46659--09bd94bef98018532f719847f9016343.nii.gz

UWM/sub-0027266/ses-1/mri/hammers_sub-0027266_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UWM/sub-0027266/ses-1/mri/hammers_sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/ibsr_sub-0027266_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UWM/sub-0027266/ses-1/mri/ibsr_sub-0027266_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027266/ses-1/mri/it_sub-0027266_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W2/F7/MD5E-s283--3256bc9270e6f3bd0683acd84e8f95c7.mat/MD5E-s283--3256bc9270e6f3bd0683acd84e8f95c7.mat

UWM/sub-0027266/ses-1/mri/it_sub-0027266_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V8/MF/MD5E-s281--54eb34c96dffa082f420ac798ebf8cf9.mat/MD5E-s281--54eb34c96dffa082f420ac798ebf8cf9.mat

UWM/sub-0027266/ses-1/mri/iy_sub-0027266_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027266/ses-1/mri/julichbrain_sub-0027266_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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UWM/sub-0027266/ses-1/mri/julichbrain_sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/lpba40_sub-0027266_ses-1_run-1_T1w.csv

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UWM/sub-0027266/ses-1/mri/lpba40_sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/m0wp1sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/m0wp2sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/m0wp3sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/mori_sub-0027266_ses-1_run-1_T1w.csv

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UWM/sub-0027266/ses-1/mri/mori_sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/mwp1sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/mwp2sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/mwp3sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/neuromorphometrics_sub-0027266_ses-1_run-1_T1w.csv

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UWM/sub-0027266/ses-1/mri/neuromorphometrics_sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/p0sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/p1sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/p2sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/p3sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/rp1sub-0027266_ses-1_run-1_T1w_affine.nii.gz

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UWM/sub-0027266/ses-1/mri/rp2sub-0027266_ses-1_run-1_T1w_affine.nii.gz

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UWM/sub-0027266/ses-1/mri/rp3sub-0027266_ses-1_run-1_T1w_affine.nii.gz

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UWM/sub-0027266/ses-1/mri/t_sub-0027266_ses-1_run-1_T1w_affine_reorient.mat

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UWM/sub-0027266/ses-1/mri/t_sub-0027266_ses-1_run-1_T1w_rigid_reorient.mat

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UWM/sub-0027266/ses-1/mri/thalamus_sub-0027266_ses-1_run-1_T1w.csv

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UWM/sub-0027266/ses-1/mri/thalamus_sub-0027266_ses-1_run-1_T1w.nii.gz

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UWM/sub-0027266/ses-1/mri/wj_sub-0027266_ses-1_run-1_T1w.nii.gz

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