[DATALAD RUNCMD] Compute BNU_2/sub-0025935/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025935/ses-2/anat/sub-0025935_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025935/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025935/ses-2/label/catROI_sub-0025935_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/0m/MD5E-s58167--24cc007247cdb64f5416dc207cb80944.mat/MD5E-s58167--24cc007247cdb64f5416dc207cb80944.mat

BNU_2/sub-0025935/ses-2/label/catROI_sub-0025935_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FK/Qf/MD5E-s188537--022caedd3bc08abc2221c66417da5abb.xml/MD5E-s188537--022caedd3bc08abc2221c66417da5abb.xml

BNU_2/sub-0025935/ses-2/label/catROIs_sub-0025935_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8p/zp/MD5E-s119976--00910639f16382a6dc9edcf449a47cc7.mat/MD5E-s119976--00910639f16382a6dc9edcf449a47cc7.mat

BNU_2/sub-0025935/ses-2/label/catROIs_sub-0025935_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8M/1J/MD5E-s332190--4bbe3895ad2a0ff85d884499912981c0.xml/MD5E-s332190--4bbe3895ad2a0ff85d884499912981c0.xml

BNU_2/sub-0025935/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025935_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025935/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mz/Vf/MD5E-s178229--6beea261ebce55f7b797e783dcea432d.nii.gz/MD5E-s178229--6beea261ebce55f7b797e783dcea432d.nii.gz

BNU_2/sub-0025935/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025935_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025935/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9p/Kj/MD5E-s198791--22d2173198c74ee037a7420af2eb472b.nii.gz/MD5E-s198791--22d2173198c74ee037a7420af2eb472b.nii.gz

BNU_2/sub-0025935/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025935_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025935/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/Gv/MD5E-s268049--b8767e4829f2c912c3e7519cc6f8df3b.nii.gz/MD5E-s268049--b8767e4829f2c912c3e7519cc6f8df3b.nii.gz

BNU_2/sub-0025935/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025935_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025935/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qQ/M4/MD5E-s296450--83b3e5938424394823ee2f7dfb2237ae.nii.gz/MD5E-s296450--83b3e5938424394823ee2f7dfb2237ae.nii.gz

BNU_2/sub-0025935/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025935_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025935/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qp/X4/MD5E-s25492--cad6332e015369cae3f9dd78e6585eb5.nii.gz/MD5E-s25492--cad6332e015369cae3f9dd78e6585eb5.nii.gz

BNU_2/sub-0025935/ses-2/mri/aal3_sub-0025935_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025935/ses-2/mri/aal3_sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mj/qQ/MD5E-s199198--b9e0bb642e2debd2b9c7f9ab82417a93.nii.gz/MD5E-s199198--b9e0bb642e2debd2b9c7f9ab82417a93.nii.gz

BNU_2/sub-0025935/ses-2/mri/anatomy3_sub-0025935_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025935/ses-2/mri/anatomy3_sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gj/4M/MD5E-s144794--7a685e3fee0728ad1bc80cf4586a36ad.nii.gz/MD5E-s144794--7a685e3fee0728ad1bc80cf4586a36ad.nii.gz

BNU_2/sub-0025935/ses-2/mri/anon_misub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mz/02/MD5E-s4946647--bde671a511005a23c8adcca2b3ef9820.nii.gz/MD5E-s4946647--bde671a511005a23c8adcca2b3ef9820.nii.gz

BNU_2/sub-0025935/ses-2/mri/anon_msub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J2/VQ/MD5E-s11067465--11c8ffbb3624d63eed198d92725f1cc4.nii.gz/MD5E-s11067465--11c8ffbb3624d63eed198d92725f1cc4.nii.gz

BNU_2/sub-0025935/ses-2/mri/cat_sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4M/x6/MD5E-s104160--72bb9d49a59c07c7afe9709cf23f45f1.nii.gz/MD5E-s104160--72bb9d49a59c07c7afe9709cf23f45f1.nii.gz

BNU_2/sub-0025935/ses-2/mri/cobra_sub-0025935_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025935/ses-2/mri/cobra_sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/75/59/MD5E-s50570--becf17932f85de26951d360b3e876a58.nii.gz/MD5E-s50570--becf17932f85de26951d360b3e876a58.nii.gz

BNU_2/sub-0025935/ses-2/mri/hammers_sub-0025935_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025935/ses-2/mri/hammers_sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P5/8p/MD5E-s155199--d3ecac030d78300041f0da280ba9cf8f.nii.gz/MD5E-s155199--d3ecac030d78300041f0da280ba9cf8f.nii.gz

BNU_2/sub-0025935/ses-2/mri/ibsr_sub-0025935_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025935/ses-2/mri/ibsr_sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Q/Gg/MD5E-s165628--86dcb657beeabc75823e3cc3c341ec4a.nii.gz/MD5E-s165628--86dcb657beeabc75823e3cc3c341ec4a.nii.gz

BNU_2/sub-0025935/ses-2/mri/it_sub-0025935_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/11/kV/MD5E-s283--9c30a262614efb8d76aaab7e3ab45e14.mat/MD5E-s283--9c30a262614efb8d76aaab7e3ab45e14.mat

BNU_2/sub-0025935/ses-2/mri/it_sub-0025935_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g0/WG/MD5E-s284--ebd43b46014f3d6d2a6770bdb4d0a158.mat/MD5E-s284--ebd43b46014f3d6d2a6770bdb4d0a158.mat

BNU_2/sub-0025935/ses-2/mri/iy_sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mp/Mp/MD5E-s53210995--bb809f95fa0fc132a9fee95bfcc93f1e.nii.gz/MD5E-s53210995--bb809f95fa0fc132a9fee95bfcc93f1e.nii.gz

BNU_2/sub-0025935/ses-2/mri/julichbrain_sub-0025935_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025935/ses-2/mri/julichbrain_sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XQ/xg/MD5E-s214081--d0d1a9157fa1634832a94c22d81711bb.nii.gz/MD5E-s214081--d0d1a9157fa1634832a94c22d81711bb.nii.gz

BNU_2/sub-0025935/ses-2/mri/lpba40_sub-0025935_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025935/ses-2/mri/lpba40_sub-0025935_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025935/ses-2/mri/m0wp1sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025935/ses-2/mri/m0wp2sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/76/xZ/MD5E-s2287744--51535189d41b16eb133075e626208450.nii.gz/MD5E-s2287744--51535189d41b16eb133075e626208450.nii.gz

BNU_2/sub-0025935/ses-2/mri/m0wp3sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025935/ses-2/mri/mori_sub-0025935_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025935/ses-2/mri/mori_sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PX/Pv/MD5E-s183799--b2f5a9b7df1257458b14b5169c85cbab.nii.gz/MD5E-s183799--b2f5a9b7df1257458b14b5169c85cbab.nii.gz

BNU_2/sub-0025935/ses-2/mri/mwp1sub-0025935_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025935/ses-2/mri/mwp2sub-0025935_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025935/ses-2/mri/mwp3sub-0025935_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025935/ses-2/mri/neuromorphometrics_sub-0025935_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025935/ses-2/mri/neuromorphometrics_sub-0025935_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025935/ses-2/mri/p0sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025935/ses-2/mri/p1sub-0025935_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025935/ses-2/mri/p2sub-0025935_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Jg/v2/MD5E-s470426--8d9b0bc3a1c145188cbb63bc5dc6ee03.nii.gz/MD5E-s470426--8d9b0bc3a1c145188cbb63bc5dc6ee03.nii.gz

BNU_2/sub-0025935/ses-2/mri/p3sub-0025935_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025935/ses-2/mri/rp1sub-0025935_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025935/ses-2/mri/rp2sub-0025935_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025935/ses-2/mri/rp3sub-0025935_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025935/ses-2/mri/t_sub-0025935_ses-2_run-1_T1w_affine_reorient.mat

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BNU_2/sub-0025935/ses-2/mri/t_sub-0025935_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025935/ses-2/mri/thalamus_sub-0025935_ses-2_run-1_T1w.csv

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BNU_2/sub-0025935/ses-2/mri/thalamus_sub-0025935_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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