[DATALAD RUNCMD] Compute SWU_4/sub-0025691/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025691/ses-1/anat/sub-0025691_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025691/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025691/ses-1/label/catROI_sub-0025691_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qW/vX/MD5E-s61256--2d963422978d0913b1ba3eef65fecec2.mat/MD5E-s61256--2d963422978d0913b1ba3eef65fecec2.mat

SWU_4/sub-0025691/ses-1/label/catROI_sub-0025691_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M7/KK/MD5E-s188872--4c7268bcd3781b8e1e4c624dd39af27a.xml/MD5E-s188872--4c7268bcd3781b8e1e4c624dd39af27a.xml

SWU_4/sub-0025691/ses-1/label/catROIs_sub-0025691_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8K/zF/MD5E-s120059--0302b501fbeec12c0fb590f1903eaa10.mat/MD5E-s120059--0302b501fbeec12c0fb590f1903eaa10.mat

SWU_4/sub-0025691/ses-1/label/catROIs_sub-0025691_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vG/Wf/MD5E-s332094--adabca4f92b1e99f0ca5aac31cb415ba.xml/MD5E-s332094--adabca4f92b1e99f0ca5aac31cb415ba.xml

SWU_4/sub-0025691/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025691_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025691/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/qp/MD5E-s166532--5b7d440c3c3dd1847c50b395cb9d13d3.nii.gz/MD5E-s166532--5b7d440c3c3dd1847c50b395cb9d13d3.nii.gz

SWU_4/sub-0025691/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025691_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025691/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fV/89/MD5E-s185538--59564cfa834dde207ef784ce6b95989b.nii.gz/MD5E-s185538--59564cfa834dde207ef784ce6b95989b.nii.gz

SWU_4/sub-0025691/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025691_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025691/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qX/65/MD5E-s249128--8564e06e58dd2155a3d41790b5a36a4e.nii.gz/MD5E-s249128--8564e06e58dd2155a3d41790b5a36a4e.nii.gz

SWU_4/sub-0025691/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025691_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025691/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/mm/MD5E-s277277--6c16e202c3fc00e6e32f2db95ad7501e.nii.gz/MD5E-s277277--6c16e202c3fc00e6e32f2db95ad7501e.nii.gz

SWU_4/sub-0025691/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025691_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025691/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P4/xk/MD5E-s24204--613082929b3f64319aed2e9814b85cce.nii.gz/MD5E-s24204--613082929b3f64319aed2e9814b85cce.nii.gz

SWU_4/sub-0025691/ses-1/mri/aal3_sub-0025691_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025691/ses-1/mri/aal3_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3g/FF/MD5E-s186804--5c9caccaf3e2b79e7a635acf0eec5783.nii.gz/MD5E-s186804--5c9caccaf3e2b79e7a635acf0eec5783.nii.gz

SWU_4/sub-0025691/ses-1/mri/anatomy3_sub-0025691_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025691/ses-1/mri/anatomy3_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/57/MD5E-s137041--fcbe62189b8a5430e25dafce55c177be.nii.gz/MD5E-s137041--fcbe62189b8a5430e25dafce55c177be.nii.gz

SWU_4/sub-0025691/ses-1/mri/anon_misub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pw/Fm/MD5E-s8857206--4b4f18083cf111829539a4946c84c468.nii.gz/MD5E-s8857206--4b4f18083cf111829539a4946c84c468.nii.gz

SWU_4/sub-0025691/ses-1/mri/anon_msub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4w/25/MD5E-s9056381--b536fb248646886b1d011b10493dd46f.nii.gz/MD5E-s9056381--b536fb248646886b1d011b10493dd46f.nii.gz

SWU_4/sub-0025691/ses-1/mri/cat_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0f/14/MD5E-s101978--41b9e0e6d00327a98635b6994e04c306.nii.gz/MD5E-s101978--41b9e0e6d00327a98635b6994e04c306.nii.gz

SWU_4/sub-0025691/ses-1/mri/cobra_sub-0025691_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025691/ses-1/mri/cobra_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X8/pP/MD5E-s48827--0ed087d0c5ac4f8e4762350dc9251df1.nii.gz/MD5E-s48827--0ed087d0c5ac4f8e4762350dc9251df1.nii.gz

SWU_4/sub-0025691/ses-1/mri/hammers_sub-0025691_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025691/ses-1/mri/hammers_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zw/MG/MD5E-s147646--c2be43841464b7bdc51a09467593f847.nii.gz/MD5E-s147646--c2be43841464b7bdc51a09467593f847.nii.gz

SWU_4/sub-0025691/ses-1/mri/ibsr_sub-0025691_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025691/ses-1/mri/ibsr_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8z/2Q/MD5E-s157179--6380a049e712cfbe9fa48e65f5827755.nii.gz/MD5E-s157179--6380a049e712cfbe9fa48e65f5827755.nii.gz

SWU_4/sub-0025691/ses-1/mri/it_sub-0025691_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3G/P2/MD5E-s282--5defffdc789a8dd4a45b56c0ca4945b1.mat/MD5E-s282--5defffdc789a8dd4a45b56c0ca4945b1.mat

SWU_4/sub-0025691/ses-1/mri/it_sub-0025691_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/97/ZV/MD5E-s281--7f1dd0f0de7a7c84120a3f969b7d8d1e.mat/MD5E-s281--7f1dd0f0de7a7c84120a3f969b7d8d1e.mat

SWU_4/sub-0025691/ses-1/mri/iy_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xg/5F/MD5E-s44896117--4f2ef0565af5be0960ce7f467a553a43.nii.gz/MD5E-s44896117--4f2ef0565af5be0960ce7f467a553a43.nii.gz

SWU_4/sub-0025691/ses-1/mri/julichbrain_sub-0025691_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025691/ses-1/mri/julichbrain_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jp/k6/MD5E-s199586--a2bc7f76b0f6a09c466e8e955acb9acf.nii.gz/MD5E-s199586--a2bc7f76b0f6a09c466e8e955acb9acf.nii.gz

SWU_4/sub-0025691/ses-1/mri/lpba40_sub-0025691_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025691/ses-1/mri/lpba40_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jK/xX/MD5E-s145164--7151ee2e225f12ef0696b3b3340abb00.nii.gz/MD5E-s145164--7151ee2e225f12ef0696b3b3340abb00.nii.gz

SWU_4/sub-0025691/ses-1/mri/m0wp1sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/Gv/MD5E-s2579383--6d44bc561a18c65d492c9dc3e0fe399a.nii.gz/MD5E-s2579383--6d44bc561a18c65d492c9dc3e0fe399a.nii.gz

SWU_4/sub-0025691/ses-1/mri/m0wp2sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fp/gj/MD5E-s2308279--69a27b089a4dbe2866e657116a64610f.nii.gz/MD5E-s2308279--69a27b089a4dbe2866e657116a64610f.nii.gz

SWU_4/sub-0025691/ses-1/mri/m0wp3sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0p/Pv/MD5E-s2550603--89c0da99847de619a9830b697b13ec9f.nii.gz/MD5E-s2550603--89c0da99847de619a9830b697b13ec9f.nii.gz

SWU_4/sub-0025691/ses-1/mri/mori_sub-0025691_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025691/ses-1/mri/mori_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FQ/xq/MD5E-s170884--889bf964157785eb7861b0f1fdf79924.nii.gz/MD5E-s170884--889bf964157785eb7861b0f1fdf79924.nii.gz

SWU_4/sub-0025691/ses-1/mri/mwp1sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/44/MD5E-s2585110--d444a1f3858f148b1fee6d3ce8def186.nii.gz/MD5E-s2585110--d444a1f3858f148b1fee6d3ce8def186.nii.gz

SWU_4/sub-0025691/ses-1/mri/mwp2sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4q/kZ/MD5E-s2310087--309c3a6bf0541c500398ab7660f0719c.nii.gz/MD5E-s2310087--309c3a6bf0541c500398ab7660f0719c.nii.gz

SWU_4/sub-0025691/ses-1/mri/mwp3sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gM/9k/MD5E-s2549873--fef2d3dbd265452f9694b07cc5f0f7b6.nii.gz/MD5E-s2549873--fef2d3dbd265452f9694b07cc5f0f7b6.nii.gz

SWU_4/sub-0025691/ses-1/mri/neuromorphometrics_sub-0025691_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025691/ses-1/mri/neuromorphometrics_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0z/WV/MD5E-s201825--8e0a1c66b540148020943662f8b9cce1.nii.gz/MD5E-s201825--8e0a1c66b540148020943662f8b9cce1.nii.gz

SWU_4/sub-0025691/ses-1/mri/p0sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zG/0K/MD5E-s650371--f10f7a23cdce8ce2edb60a0ff372560b.nii.gz/MD5E-s650371--f10f7a23cdce8ce2edb60a0ff372560b.nii.gz

SWU_4/sub-0025691/ses-1/mri/p1sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/vG/MD5E-s690614--edc03cc6cf849dbccab94cd5bf26b8df.nii.gz/MD5E-s690614--edc03cc6cf849dbccab94cd5bf26b8df.nii.gz

SWU_4/sub-0025691/ses-1/mri/p2sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gV/qm/MD5E-s452641--4d48dc2a7c19fddaf9764912cd1d2756.nii.gz/MD5E-s452641--4d48dc2a7c19fddaf9764912cd1d2756.nii.gz

SWU_4/sub-0025691/ses-1/mri/p3sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9v/GK/MD5E-s393203--102a5021b64f254df357917b1db9065d.nii.gz/MD5E-s393203--102a5021b64f254df357917b1db9065d.nii.gz

SWU_4/sub-0025691/ses-1/mri/rp1sub-0025691_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1M/54/MD5E-s459244--ff7192f04ae7c1b23d6ee10be9759b84.nii.gz/MD5E-s459244--ff7192f04ae7c1b23d6ee10be9759b84.nii.gz

SWU_4/sub-0025691/ses-1/mri/rp2sub-0025691_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025691/ses-1/mri/rp3sub-0025691_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025691/ses-1/mri/t_sub-0025691_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025691/ses-1/mri/t_sub-0025691_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1p/xz/MD5E-s280--5ff1f78c43027b59c80d5059e04f2c8b.mat/MD5E-s280--5ff1f78c43027b59c80d5059e04f2c8b.mat

SWU_4/sub-0025691/ses-1/mri/thalamus_sub-0025691_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025691/ses-1/mri/thalamus_sub-0025691_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P7/2Z/MD5E-s16236--442d60ccd0851d5359ec9cbe7fedd485.nii.gz/MD5E-s16236--442d60ccd0851d5359ec9cbe7fedd485.nii.gz

SWU_4/sub-0025691/ses-1/mri/wj_sub-0025691_ses-1_run-1_T1w.nii.gz

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