[DATALAD RUNCMD] Compute SWU_4/sub-0025653/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025653/ses-2/anat/sub-0025653_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025653/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025653/ses-2/label/catROI_sub-0025653_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pP/mX/MD5E-s61305--d0eb8dc5e9e8fc220dc2c55078d36b42.mat/MD5E-s61305--d0eb8dc5e9e8fc220dc2c55078d36b42.mat

SWU_4/sub-0025653/ses-2/label/catROI_sub-0025653_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z9/fv/MD5E-s188666--b847bdc8cb4e26eedfaf9fd6ae43221f.xml/MD5E-s188666--b847bdc8cb4e26eedfaf9fd6ae43221f.xml

SWU_4/sub-0025653/ses-2/label/catROIs_sub-0025653_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qv/vF/MD5E-s120118--d1c6c03d7d5cde5e69e3a376184bd62a.mat/MD5E-s120118--d1c6c03d7d5cde5e69e3a376184bd62a.mat

SWU_4/sub-0025653/ses-2/label/catROIs_sub-0025653_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FK/gj/MD5E-s332149--935a605d6377c0b4657ffdb4ab29582a.xml/MD5E-s332149--935a605d6377c0b4657ffdb4ab29582a.xml

SWU_4/sub-0025653/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025653_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025653/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5P/5X/MD5E-s179211--6220b04a3d666886ba17642f95895096.nii.gz/MD5E-s179211--6220b04a3d666886ba17642f95895096.nii.gz

SWU_4/sub-0025653/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025653_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025653/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/X0/MD5E-s201206--416bbe741b29f79bdcfe4bb0fb04fe93.nii.gz/MD5E-s201206--416bbe741b29f79bdcfe4bb0fb04fe93.nii.gz

SWU_4/sub-0025653/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025653_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025653/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v9/4k/MD5E-s270925--8d40482e909f73ae8ed1ba92a8566c5b.nii.gz/MD5E-s270925--8d40482e909f73ae8ed1ba92a8566c5b.nii.gz

SWU_4/sub-0025653/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025653_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025653/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ff/21/MD5E-s300651--4bd989222ca43d2e731a3a238f33e1a5.nii.gz/MD5E-s300651--4bd989222ca43d2e731a3a238f33e1a5.nii.gz

SWU_4/sub-0025653/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025653_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025653/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PG/vP/MD5E-s25589--4a2fe4df7014e450fc8f1fc0da9a59ad.nii.gz/MD5E-s25589--4a2fe4df7014e450fc8f1fc0da9a59ad.nii.gz

SWU_4/sub-0025653/ses-2/mri/aal3_sub-0025653_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025653/ses-2/mri/aal3_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/xv/MD5E-s202017--d6195598944022d0035a2867ead144bd.nii.gz/MD5E-s202017--d6195598944022d0035a2867ead144bd.nii.gz

SWU_4/sub-0025653/ses-2/mri/anatomy3_sub-0025653_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025653/ses-2/mri/anatomy3_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jW/ww/MD5E-s146953--d41ab5dc7d11d902c36242beafc52154.nii.gz/MD5E-s146953--d41ab5dc7d11d902c36242beafc52154.nii.gz

SWU_4/sub-0025653/ses-2/mri/anon_misub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X1/W8/MD5E-s10037521--091cc69b2dbecfe86404de92dcac1591.nii.gz/MD5E-s10037521--091cc69b2dbecfe86404de92dcac1591.nii.gz

SWU_4/sub-0025653/ses-2/mri/anon_msub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vX/96/MD5E-s10428071--de63df29e63eea80b7eb2a277a08df00.nii.gz/MD5E-s10428071--de63df29e63eea80b7eb2a277a08df00.nii.gz

SWU_4/sub-0025653/ses-2/mri/cat_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vx/4x/MD5E-s106043--b932b82a376ca3727a6c049c96a85e1f.nii.gz/MD5E-s106043--b932b82a376ca3727a6c049c96a85e1f.nii.gz

SWU_4/sub-0025653/ses-2/mri/cobra_sub-0025653_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025653/ses-2/mri/cobra_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/83/KP/MD5E-s50750--ad0678237f917d577bfe6fedb84e2a48.nii.gz/MD5E-s50750--ad0678237f917d577bfe6fedb84e2a48.nii.gz

SWU_4/sub-0025653/ses-2/mri/hammers_sub-0025653_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025653/ses-2/mri/hammers_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0x/FK/MD5E-s158132--49d5856063e9ae6fc51fff0c903c949e.nii.gz/MD5E-s158132--49d5856063e9ae6fc51fff0c903c949e.nii.gz

SWU_4/sub-0025653/ses-2/mri/ibsr_sub-0025653_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025653/ses-2/mri/ibsr_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/76/g0/MD5E-s165824--5b99a12eae810a160213c39a0d1f8a69.nii.gz/MD5E-s165824--5b99a12eae810a160213c39a0d1f8a69.nii.gz

SWU_4/sub-0025653/ses-2/mri/it_sub-0025653_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2v/34/MD5E-s282--92c1e1cf4a8d96fdea1fe0f7b6abd843.mat/MD5E-s282--92c1e1cf4a8d96fdea1fe0f7b6abd843.mat

SWU_4/sub-0025653/ses-2/mri/it_sub-0025653_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W9/kx/MD5E-s282--c386aafab69ce9636136c7484e384657.mat/MD5E-s282--c386aafab69ce9636136c7484e384657.mat

SWU_4/sub-0025653/ses-2/mri/iy_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6v/5F/MD5E-s51256136--a6f06fe05ff67c0729b2e9220d3508e8.nii.gz/MD5E-s51256136--a6f06fe05ff67c0729b2e9220d3508e8.nii.gz

SWU_4/sub-0025653/ses-2/mri/julichbrain_sub-0025653_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025653/ses-2/mri/julichbrain_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PP/v3/MD5E-s215007--08e564ba3308a6f5abf480c3b61a2746.nii.gz/MD5E-s215007--08e564ba3308a6f5abf480c3b61a2746.nii.gz

SWU_4/sub-0025653/ses-2/mri/lpba40_sub-0025653_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025653/ses-2/mri/lpba40_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PP/37/MD5E-s154852--86ffadea5db3580fae57f68bdd77d85a.nii.gz/MD5E-s154852--86ffadea5db3580fae57f68bdd77d85a.nii.gz

SWU_4/sub-0025653/ses-2/mri/m0wp1sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zF/qW/MD5E-s2575718--ffd6f55876ce6657e65081baa05fd251.nii.gz/MD5E-s2575718--ffd6f55876ce6657e65081baa05fd251.nii.gz

SWU_4/sub-0025653/ses-2/mri/m0wp2sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p9/2q/MD5E-s2320225--81433b03de737356f7aedc029cdfa0d1.nii.gz/MD5E-s2320225--81433b03de737356f7aedc029cdfa0d1.nii.gz

SWU_4/sub-0025653/ses-2/mri/m0wp3sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WQ/mV/MD5E-s2526243--463ff8652badfcc2420ad2ae45411527.nii.gz/MD5E-s2526243--463ff8652badfcc2420ad2ae45411527.nii.gz

SWU_4/sub-0025653/ses-2/mri/mori_sub-0025653_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025653/ses-2/mri/mori_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4w/PG/MD5E-s186401--b64da8e0b224780682a8f38c4cb9be78.nii.gz/MD5E-s186401--b64da8e0b224780682a8f38c4cb9be78.nii.gz

SWU_4/sub-0025653/ses-2/mri/mwp1sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gm/04/MD5E-s2577923--800500646fb85e16d3431e0025affe63.nii.gz/MD5E-s2577923--800500646fb85e16d3431e0025affe63.nii.gz

SWU_4/sub-0025653/ses-2/mri/mwp2sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jZ/K9/MD5E-s2317297--b54166941e1f05ac0971a2d729311bcf.nii.gz/MD5E-s2317297--b54166941e1f05ac0971a2d729311bcf.nii.gz

SWU_4/sub-0025653/ses-2/mri/mwp3sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mQ/4g/MD5E-s2525202--2e3ae65536a07705dbb83ccc3e4c33b0.nii.gz/MD5E-s2525202--2e3ae65536a07705dbb83ccc3e4c33b0.nii.gz

SWU_4/sub-0025653/ses-2/mri/neuromorphometrics_sub-0025653_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025653/ses-2/mri/neuromorphometrics_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q7/0j/MD5E-s215663--9d0b211938db03bc81bab98556ddf4c5.nii.gz/MD5E-s215663--9d0b211938db03bc81bab98556ddf4c5.nii.gz

SWU_4/sub-0025653/ses-2/mri/p0sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k7/j4/MD5E-s694632--8f6719be5aeb1817c91390613ffee155.nii.gz/MD5E-s694632--8f6719be5aeb1817c91390613ffee155.nii.gz

SWU_4/sub-0025653/ses-2/mri/p1sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WK/W1/MD5E-s739010--fd4f5ddaf6d5ee378c0df8da6d42cccc.nii.gz/MD5E-s739010--fd4f5ddaf6d5ee378c0df8da6d42cccc.nii.gz

SWU_4/sub-0025653/ses-2/mri/p2sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xg/jM/MD5E-s488757--237192bec5bb65077edd738bfda27500.nii.gz/MD5E-s488757--237192bec5bb65077edd738bfda27500.nii.gz

SWU_4/sub-0025653/ses-2/mri/p3sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025653/ses-2/mri/rp1sub-0025653_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z3/Pq/MD5E-s452551--41f1252137284df7cf50e97c0211e1b6.nii.gz/MD5E-s452551--41f1252137284df7cf50e97c0211e1b6.nii.gz

SWU_4/sub-0025653/ses-2/mri/rp2sub-0025653_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025653/ses-2/mri/rp3sub-0025653_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025653/ses-2/mri/t_sub-0025653_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025653/ses-2/mri/t_sub-0025653_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JJ/MG/MD5E-s283--dfabfa16c0ce8b56781ef4faca96711f.mat/MD5E-s283--dfabfa16c0ce8b56781ef4faca96711f.mat

SWU_4/sub-0025653/ses-2/mri/thalamus_sub-0025653_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025653/ses-2/mri/thalamus_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025653/ses-2/mri/wj_sub-0025653_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025653/ses-2/mri/wmisub-0025653_ses-2_run-1_T1w.nii.gz

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