[DATALAD RUNCMD] Compute SWU_4/sub-0025861/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025861/ses-1/anat/sub-0025861_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025861/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025861/ses-1/label/catROI_sub-0025861_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P2/0X/MD5E-s61265--845a4d78d6dae64e3e8424f0b89940c9.mat/MD5E-s61265--845a4d78d6dae64e3e8424f0b89940c9.mat

SWU_4/sub-0025861/ses-1/label/catROI_sub-0025861_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/26/Gj/MD5E-s188964--4c3dac2fe8557d9d4d15200cac61127e.xml/MD5E-s188964--4c3dac2fe8557d9d4d15200cac61127e.xml

SWU_4/sub-0025861/ses-1/label/catROIs_sub-0025861_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pW/5G/MD5E-s120065--82be82397389914685c8cc7943978b48.mat/MD5E-s120065--82be82397389914685c8cc7943978b48.mat

SWU_4/sub-0025861/ses-1/label/catROIs_sub-0025861_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jx/v8/MD5E-s332118--665f81d788d411254e221bbefe94d3f9.xml/MD5E-s332118--665f81d788d411254e221bbefe94d3f9.xml

SWU_4/sub-0025861/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025861_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025861/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xk/XF/MD5E-s161637--fa5deef2e371090e8dae1796ffaa2592.nii.gz/MD5E-s161637--fa5deef2e371090e8dae1796ffaa2592.nii.gz

SWU_4/sub-0025861/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025861_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025861/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2V/14/MD5E-s180495--7ecb6d63ca84a1ce20cc7214693b5884.nii.gz/MD5E-s180495--7ecb6d63ca84a1ce20cc7214693b5884.nii.gz

SWU_4/sub-0025861/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025861_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025861/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jX/W9/MD5E-s244280--d18faa824bb975fc821661b7373cd1ae.nii.gz/MD5E-s244280--d18faa824bb975fc821661b7373cd1ae.nii.gz

SWU_4/sub-0025861/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025861_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025861/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/4z/MD5E-s271716--a6c06f19dbf73069e98f9b8d5508244b.nii.gz/MD5E-s271716--a6c06f19dbf73069e98f9b8d5508244b.nii.gz

SWU_4/sub-0025861/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025861_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025861/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/65/F2/MD5E-s25743--360edbb7ceec65bf5e16a8d4b8bec5fc.nii.gz/MD5E-s25743--360edbb7ceec65bf5e16a8d4b8bec5fc.nii.gz

SWU_4/sub-0025861/ses-1/mri/aal3_sub-0025861_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025861/ses-1/mri/aal3_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/vz/MD5E-s184126--bb81188c26d542b854722d8948dc71b9.nii.gz/MD5E-s184126--bb81188c26d542b854722d8948dc71b9.nii.gz

SWU_4/sub-0025861/ses-1/mri/anatomy3_sub-0025861_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025861/ses-1/mri/anatomy3_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vf/xQ/MD5E-s134195--766e64ec739873fdbd797ecaa869144c.nii.gz/MD5E-s134195--766e64ec739873fdbd797ecaa869144c.nii.gz

SWU_4/sub-0025861/ses-1/mri/anon_misub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fx/9Q/MD5E-s11023098--c9cb06f676e560892ab970dccf335938.nii.gz/MD5E-s11023098--c9cb06f676e560892ab970dccf335938.nii.gz

SWU_4/sub-0025861/ses-1/mri/anon_msub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kg/97/MD5E-s12234425--229d60824d14785e1c7d5d8aaaedc257.nii.gz/MD5E-s12234425--229d60824d14785e1c7d5d8aaaedc257.nii.gz

SWU_4/sub-0025861/ses-1/mri/cat_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zm/ZV/MD5E-s100393--3e5c6aad038b99f3073124901253079a.nii.gz/MD5E-s100393--3e5c6aad038b99f3073124901253079a.nii.gz

SWU_4/sub-0025861/ses-1/mri/cobra_sub-0025861_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025861/ses-1/mri/cobra_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qZ/k4/MD5E-s49296--462ff97f7d2580f68645159677f2841d.nii.gz/MD5E-s49296--462ff97f7d2580f68645159677f2841d.nii.gz

SWU_4/sub-0025861/ses-1/mri/hammers_sub-0025861_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025861/ses-1/mri/hammers_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v3/v9/MD5E-s145551--9834e41ae652990deca4616669b2d79a.nii.gz/MD5E-s145551--9834e41ae652990deca4616669b2d79a.nii.gz

SWU_4/sub-0025861/ses-1/mri/ibsr_sub-0025861_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025861/ses-1/mri/ibsr_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/85/MD5E-s153257--9bda83b087d6a7646c59152dcc0e435b.nii.gz/MD5E-s153257--9bda83b087d6a7646c59152dcc0e435b.nii.gz

SWU_4/sub-0025861/ses-1/mri/it_sub-0025861_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/J2/MD5E-s284--f406e68d1349f3c3afe9cf8c7c71ef71.mat/MD5E-s284--f406e68d1349f3c3afe9cf8c7c71ef71.mat

SWU_4/sub-0025861/ses-1/mri/it_sub-0025861_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z7/Pq/MD5E-s283--1722b317b1edf1bca0edc492e7189875.mat/MD5E-s283--1722b317b1edf1bca0edc492e7189875.mat

SWU_4/sub-0025861/ses-1/mri/iy_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5z/JG/MD5E-s44258077--e41b1868ef8d031c4214cf0caf46712d.nii.gz/MD5E-s44258077--e41b1868ef8d031c4214cf0caf46712d.nii.gz

SWU_4/sub-0025861/ses-1/mri/julichbrain_sub-0025861_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025861/ses-1/mri/julichbrain_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5M/pW/MD5E-s194489--106d40d4f3de0c36403cdba48299f877.nii.gz/MD5E-s194489--106d40d4f3de0c36403cdba48299f877.nii.gz

SWU_4/sub-0025861/ses-1/mri/lpba40_sub-0025861_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025861/ses-1/mri/lpba40_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wP/jM/MD5E-s141991--33405176abae7a05dde3233395a17bbf.nii.gz/MD5E-s141991--33405176abae7a05dde3233395a17bbf.nii.gz

SWU_4/sub-0025861/ses-1/mri/m0wp1sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PK/Zj/MD5E-s2587782--a5478449c0006fb459c421e41c7693ae.nii.gz/MD5E-s2587782--a5478449c0006fb459c421e41c7693ae.nii.gz

SWU_4/sub-0025861/ses-1/mri/m0wp2sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XW/j4/MD5E-s2328189--bf390256a7ff8ffc472c01099f52d882.nii.gz/MD5E-s2328189--bf390256a7ff8ffc472c01099f52d882.nii.gz

SWU_4/sub-0025861/ses-1/mri/m0wp3sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/55/JV/MD5E-s2617744--16bbdc1be610e44d0defb7db1245414d.nii.gz/MD5E-s2617744--16bbdc1be610e44d0defb7db1245414d.nii.gz

SWU_4/sub-0025861/ses-1/mri/mori_sub-0025861_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025861/ses-1/mri/mori_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jg/42/MD5E-s170130--d3a99278cbb8813cf19662b0e4ea2692.nii.gz/MD5E-s170130--d3a99278cbb8813cf19662b0e4ea2692.nii.gz

SWU_4/sub-0025861/ses-1/mri/mwp1sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/42/6j/MD5E-s2593052--ce9dac0cc8e98b2e87679750dc4bf279.nii.gz/MD5E-s2593052--ce9dac0cc8e98b2e87679750dc4bf279.nii.gz

SWU_4/sub-0025861/ses-1/mri/mwp2sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/05/5k/MD5E-s2331738--1f427db56dcfbcc3022ec55053d25cb4.nii.gz/MD5E-s2331738--1f427db56dcfbcc3022ec55053d25cb4.nii.gz

SWU_4/sub-0025861/ses-1/mri/mwp3sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9q/W6/MD5E-s2615312--e5c9ff7a4a348ee9bffc942414352d6e.nii.gz/MD5E-s2615312--e5c9ff7a4a348ee9bffc942414352d6e.nii.gz

SWU_4/sub-0025861/ses-1/mri/neuromorphometrics_sub-0025861_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025861/ses-1/mri/neuromorphometrics_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mv/WK/MD5E-s197179--847ef9f83eacf31c0dfd33869109d7d2.nii.gz/MD5E-s197179--847ef9f83eacf31c0dfd33869109d7d2.nii.gz

SWU_4/sub-0025861/ses-1/mri/p0sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0J/x4/MD5E-s632417--14f427fcaee58104e9ee2df4dd667af6.nii.gz/MD5E-s632417--14f427fcaee58104e9ee2df4dd667af6.nii.gz

SWU_4/sub-0025861/ses-1/mri/p1sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q0/jQ/MD5E-s668614--3b194320819b058b37bbcf538ade5ce2.nii.gz/MD5E-s668614--3b194320819b058b37bbcf538ade5ce2.nii.gz

SWU_4/sub-0025861/ses-1/mri/p2sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zZ/gj/MD5E-s438711--82453044edb76968f537c7a3b2fed72b.nii.gz/MD5E-s438711--82453044edb76968f537c7a3b2fed72b.nii.gz

SWU_4/sub-0025861/ses-1/mri/p3sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025861/ses-1/mri/rp1sub-0025861_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kp/XG/MD5E-s460993--95a4bf730b3fb191aea28594643f0298.nii.gz/MD5E-s460993--95a4bf730b3fb191aea28594643f0298.nii.gz

SWU_4/sub-0025861/ses-1/mri/rp2sub-0025861_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0K/k2/MD5E-s316640--aade6a82b12e7fd9adb586acc95a0c4f.nii.gz/MD5E-s316640--aade6a82b12e7fd9adb586acc95a0c4f.nii.gz

SWU_4/sub-0025861/ses-1/mri/rp3sub-0025861_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025861/ses-1/mri/t_sub-0025861_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j8/MX/MD5E-s284--c17208ed99db036dba1bcb07c8d3b8ed.mat/MD5E-s284--c17208ed99db036dba1bcb07c8d3b8ed.mat

SWU_4/sub-0025861/ses-1/mri/t_sub-0025861_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kx/26/MD5E-s284--a0c655d8d8bfe0221288cf6f7b496199.mat/MD5E-s284--a0c655d8d8bfe0221288cf6f7b496199.mat

SWU_4/sub-0025861/ses-1/mri/thalamus_sub-0025861_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025861/ses-1/mri/thalamus_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6V/gm/MD5E-s16237--765dc9733575a96a60ae75811a1f7d2e.nii.gz/MD5E-s16237--765dc9733575a96a60ae75811a1f7d2e.nii.gz

SWU_4/sub-0025861/ses-1/mri/wj_sub-0025861_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025861/ses-1/mri/wmisub-0025861_ses-1_run-1_T1w.nii.gz

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