[DATALAD RUNCMD] Compute NYU_2/sub-0025018/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025018/ses-1/anat/sub-0025018_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025018/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025018/ses-1/label/catROI_sub-0025018_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QJ/wz/MD5E-s57891--3bd78ad54951aaa89b69476d66287032.mat/MD5E-s57891--3bd78ad54951aaa89b69476d66287032.mat

NYU_2/sub-0025018/ses-1/label/catROI_sub-0025018_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mP/f3/MD5E-s188694--daa863c9047c5f6898622b47d8fa2bac.xml/MD5E-s188694--daa863c9047c5f6898622b47d8fa2bac.xml

NYU_2/sub-0025018/ses-1/label/catROIs_sub-0025018_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jF/V1/MD5E-s120298--f6a0e274091a2f16df9ee2af582a891b.mat/MD5E-s120298--f6a0e274091a2f16df9ee2af582a891b.mat

NYU_2/sub-0025018/ses-1/label/catROIs_sub-0025018_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/45/f3/MD5E-s332188--206b47e140a854f3ad964efe2c73d349.xml/MD5E-s332188--206b47e140a854f3ad964efe2c73d349.xml

NYU_2/sub-0025018/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025018_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025018/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M4/48/MD5E-s146880--4b958bb0d923b66358abab34ae8c88e3.nii.gz/MD5E-s146880--4b958bb0d923b66358abab34ae8c88e3.nii.gz

NYU_2/sub-0025018/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025018_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025018/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kP/pp/MD5E-s163209--2e878e79f7dfe645d17b9d3323e97382.nii.gz/MD5E-s163209--2e878e79f7dfe645d17b9d3323e97382.nii.gz

NYU_2/sub-0025018/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025018_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025018/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kz/f7/MD5E-s220875--f9ab5f66c2e9677ed0e3cd6fac10251e.nii.gz/MD5E-s220875--f9ab5f66c2e9677ed0e3cd6fac10251e.nii.gz

NYU_2/sub-0025018/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025018_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025018/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fJ/Z0/MD5E-s245911--14a3ae3ae1b4118e4056e3388ee63a02.nii.gz/MD5E-s245911--14a3ae3ae1b4118e4056e3388ee63a02.nii.gz

NYU_2/sub-0025018/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025018_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025018/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xj/2f/MD5E-s19576--3c411d50258c4164f77049c44f642e86.nii.gz/MD5E-s19576--3c411d50258c4164f77049c44f642e86.nii.gz

NYU_2/sub-0025018/ses-1/mri/aal3_sub-0025018_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025018/ses-1/mri/aal3_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/x0/MD5E-s165393--772ade035ee177319727d028ce9970aa.nii.gz/MD5E-s165393--772ade035ee177319727d028ce9970aa.nii.gz

NYU_2/sub-0025018/ses-1/mri/anatomy3_sub-0025018_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025018/ses-1/mri/anatomy3_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W6/fj/MD5E-s116691--457357f939f7dbe9827a251e219a8676.nii.gz/MD5E-s116691--457357f939f7dbe9827a251e219a8676.nii.gz

NYU_2/sub-0025018/ses-1/mri/anon_misub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vG/9z/MD5E-s3748588--6dff5934326f1952ea0880b24a83f1df.nii.gz/MD5E-s3748588--6dff5934326f1952ea0880b24a83f1df.nii.gz

NYU_2/sub-0025018/ses-1/mri/anon_msub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xz/2J/MD5E-s7537413--34348fdee5fcf929dd5a7983655eab94.nii.gz/MD5E-s7537413--34348fdee5fcf929dd5a7983655eab94.nii.gz

NYU_2/sub-0025018/ses-1/mri/cat_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3x/89/MD5E-s86276--13aec2ce35c973179e1477c329fbac3f.nii.gz/MD5E-s86276--13aec2ce35c973179e1477c329fbac3f.nii.gz

NYU_2/sub-0025018/ses-1/mri/cobra_sub-0025018_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025018/ses-1/mri/cobra_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kV/pP/MD5E-s40367--f77ff3f732ea552bf59b95e13fb7574a.nii.gz/MD5E-s40367--f77ff3f732ea552bf59b95e13fb7574a.nii.gz

NYU_2/sub-0025018/ses-1/mri/hammers_sub-0025018_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025018/ses-1/mri/hammers_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/48/Mp/MD5E-s128992--7a27f14e5f86a844d28e5b3aee65489d.nii.gz/MD5E-s128992--7a27f14e5f86a844d28e5b3aee65489d.nii.gz

NYU_2/sub-0025018/ses-1/mri/ibsr_sub-0025018_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025018/ses-1/mri/ibsr_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PK/JG/MD5E-s135593--fa3fa2a3eb5f14dfe674de33620f07a0.nii.gz/MD5E-s135593--fa3fa2a3eb5f14dfe674de33620f07a0.nii.gz

NYU_2/sub-0025018/ses-1/mri/it_sub-0025018_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wp/gf/MD5E-s282--073f0d37f9f63ed5813b4ce460e6d180.mat/MD5E-s282--073f0d37f9f63ed5813b4ce460e6d180.mat

NYU_2/sub-0025018/ses-1/mri/it_sub-0025018_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/zm/MD5E-s283--a7c59443795811bbdaed1b209e626b26.mat/MD5E-s283--a7c59443795811bbdaed1b209e626b26.mat

NYU_2/sub-0025018/ses-1/mri/iy_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zf/9V/MD5E-s33422283--e4e61d958470552a4c5abb9290f5d97f.nii.gz/MD5E-s33422283--e4e61d958470552a4c5abb9290f5d97f.nii.gz

NYU_2/sub-0025018/ses-1/mri/julichbrain_sub-0025018_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025018/ses-1/mri/julichbrain_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/63/jG/MD5E-s172980--701d3a687f92de4290f9e3926116f7fc.nii.gz/MD5E-s172980--701d3a687f92de4290f9e3926116f7fc.nii.gz

NYU_2/sub-0025018/ses-1/mri/lpba40_sub-0025018_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025018/ses-1/mri/lpba40_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ww/v1/MD5E-s127619--2943405409c41d80ea437d201b4cabdf.nii.gz/MD5E-s127619--2943405409c41d80ea437d201b4cabdf.nii.gz

NYU_2/sub-0025018/ses-1/mri/m0wp1sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2x/zx/MD5E-s2595345--6e56e56109c727ccaaeef77287714e43.nii.gz/MD5E-s2595345--6e56e56109c727ccaaeef77287714e43.nii.gz

NYU_2/sub-0025018/ses-1/mri/m0wp2sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0z/86/MD5E-s2281771--2368496e0d0dd4ee949c947e22b4748b.nii.gz/MD5E-s2281771--2368496e0d0dd4ee949c947e22b4748b.nii.gz

NYU_2/sub-0025018/ses-1/mri/m0wp3sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6p/fm/MD5E-s2410470--c7b5d412705ac2a15676deebeec9c787.nii.gz/MD5E-s2410470--c7b5d412705ac2a15676deebeec9c787.nii.gz

NYU_2/sub-0025018/ses-1/mri/mori_sub-0025018_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025018/ses-1/mri/mori_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025018/ses-1/mri/mwp1sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g7/Pp/MD5E-s2598054--8cca36a9cbac8cd23d63986c106b8df2.nii.gz/MD5E-s2598054--8cca36a9cbac8cd23d63986c106b8df2.nii.gz

NYU_2/sub-0025018/ses-1/mri/mwp2sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jJ/VM/MD5E-s2281150--26562ed45241c1ee30c5804dbec97fe9.nii.gz/MD5E-s2281150--26562ed45241c1ee30c5804dbec97fe9.nii.gz

NYU_2/sub-0025018/ses-1/mri/mwp3sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wp/jF/MD5E-s2406267--04dab9b273905b00226f4fe3287f68b2.nii.gz/MD5E-s2406267--04dab9b273905b00226f4fe3287f68b2.nii.gz

NYU_2/sub-0025018/ses-1/mri/neuromorphometrics_sub-0025018_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025018/ses-1/mri/neuromorphometrics_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025018/ses-1/mri/p0sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XF/7m/MD5E-s708172--a42612adc383bf063afee41863ef0cb3.nii.gz/MD5E-s708172--a42612adc383bf063afee41863ef0cb3.nii.gz

NYU_2/sub-0025018/ses-1/mri/p1sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/51/0G/MD5E-s740132--f69c2e73c1e44cece9c98550dda0e2cf.nii.gz/MD5E-s740132--f69c2e73c1e44cece9c98550dda0e2cf.nii.gz

NYU_2/sub-0025018/ses-1/mri/p2sub-0025018_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025018/ses-1/mri/p3sub-0025018_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025018/ses-1/mri/rp1sub-0025018_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025018/ses-1/mri/rp2sub-0025018_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025018/ses-1/mri/rp3sub-0025018_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025018/ses-1/mri/t_sub-0025018_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025018/ses-1/mri/t_sub-0025018_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025018/ses-1/mri/thalamus_sub-0025018_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025018/ses-1/mri/thalamus_sub-0025018_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025018/ses-1/mri/wj_sub-0025018_ses-1_run-1_T1w.nii.gz

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