[DATALAD RUNCMD] Compute SWU_4/sub-0025667/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025667/ses-2/anat/sub-0025667_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025667/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025667/ses-2/label/catROI_sub-0025667_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JX/5Q/MD5E-s57741--0a2fe3cbd99f96ee051c5c9c3cb13be6.mat/MD5E-s57741--0a2fe3cbd99f96ee051c5c9c3cb13be6.mat

SWU_4/sub-0025667/ses-2/label/catROI_sub-0025667_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/38/zj/MD5E-s188744--bfc22665e50bc202795e7e49cbe401cf.xml/MD5E-s188744--bfc22665e50bc202795e7e49cbe401cf.xml

SWU_4/sub-0025667/ses-2/label/catROIs_sub-0025667_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4P/w6/MD5E-s120101--81ab8d9cce6e658d5b97934f98b8918f.mat/MD5E-s120101--81ab8d9cce6e658d5b97934f98b8918f.mat

SWU_4/sub-0025667/ses-2/label/catROIs_sub-0025667_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZG/WX/MD5E-s332151--a3a52bbb74871d36ae98c0ed005433f9.xml/MD5E-s332151--a3a52bbb74871d36ae98c0ed005433f9.xml

SWU_4/sub-0025667/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025667_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025667/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025667_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FK/zz/MD5E-s163036--5a9135a370ebd17e873df02893d35959.nii.gz/MD5E-s163036--5a9135a370ebd17e873df02893d35959.nii.gz

SWU_4/sub-0025667/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025667_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025667/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025667_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k5/1w/MD5E-s182200--01fca13043b5c90b2fe2bee9d08f88f3.nii.gz/MD5E-s182200--01fca13043b5c90b2fe2bee9d08f88f3.nii.gz

SWU_4/sub-0025667/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025667_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025667/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025667_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gj/FJ/MD5E-s245764--d68ab6d03b92205ea61e7115d7a4bd73.nii.gz/MD5E-s245764--d68ab6d03b92205ea61e7115d7a4bd73.nii.gz

SWU_4/sub-0025667/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025667_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025667/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025667_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/98/xF/MD5E-s272958--929ea7fdbd3bcde6979ad851e088fa1e.nii.gz/MD5E-s272958--929ea7fdbd3bcde6979ad851e088fa1e.nii.gz

SWU_4/sub-0025667/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025667_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025667/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025667_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KQ/PP/MD5E-s24175--9897cc09f3b4e012636847225f592694.nii.gz/MD5E-s24175--9897cc09f3b4e012636847225f592694.nii.gz

SWU_4/sub-0025667/ses-2/mri/aal3_sub-0025667_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025667/ses-2/mri/aal3_sub-0025667_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GP/J2/MD5E-s182925--487ed33bdb8ac4d4bb3dfd8b40695ba0.nii.gz/MD5E-s182925--487ed33bdb8ac4d4bb3dfd8b40695ba0.nii.gz

SWU_4/sub-0025667/ses-2/mri/anatomy3_sub-0025667_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025667/ses-2/mri/anatomy3_sub-0025667_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4j/42/MD5E-s134597--313c06f5ca22485a09ee7c581c1b8a88.nii.gz/MD5E-s134597--313c06f5ca22485a09ee7c581c1b8a88.nii.gz

SWU_4/sub-0025667/ses-2/mri/anon_misub-0025667_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jq/8k/MD5E-s8062887--7db0422a0dd3bdcf46154338050c0460.nii.gz/MD5E-s8062887--7db0422a0dd3bdcf46154338050c0460.nii.gz

SWU_4/sub-0025667/ses-2/mri/anon_msub-0025667_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1j/pp/MD5E-s7691195--726bce168984d9c898fa3fdcd20555fb.nii.gz/MD5E-s7691195--726bce168984d9c898fa3fdcd20555fb.nii.gz

SWU_4/sub-0025667/ses-2/mri/cat_sub-0025667_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qx/Z5/MD5E-s96851--f69621e35c7b8d8b4c64a2298f992733.nii.gz/MD5E-s96851--f69621e35c7b8d8b4c64a2298f992733.nii.gz

SWU_4/sub-0025667/ses-2/mri/cobra_sub-0025667_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025667/ses-2/mri/cobra_sub-0025667_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kV/21/MD5E-s46286--ca08308ca8f5fa9db1dead09d6f644ba.nii.gz/MD5E-s46286--ca08308ca8f5fa9db1dead09d6f644ba.nii.gz

SWU_4/sub-0025667/ses-2/mri/hammers_sub-0025667_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025667/ses-2/mri/hammers_sub-0025667_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gz/7G/MD5E-s143703--fcf499e7f672b5cc02dbf2dab89ca748.nii.gz/MD5E-s143703--fcf499e7f672b5cc02dbf2dab89ca748.nii.gz

SWU_4/sub-0025667/ses-2/mri/ibsr_sub-0025667_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025667/ses-2/mri/ibsr_sub-0025667_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kq/1Z/MD5E-s152375--7988b5c5fb2d81c11a93b3413ae926de.nii.gz/MD5E-s152375--7988b5c5fb2d81c11a93b3413ae926de.nii.gz

SWU_4/sub-0025667/ses-2/mri/it_sub-0025667_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m6/3K/MD5E-s282--13306dcf2ed6e06673a5b751c3767b34.mat/MD5E-s282--13306dcf2ed6e06673a5b751c3767b34.mat

SWU_4/sub-0025667/ses-2/mri/it_sub-0025667_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/xJ/MD5E-s283--b728c67ce53a9f996875b7484461b452.mat/MD5E-s283--b728c67ce53a9f996875b7484461b452.mat

SWU_4/sub-0025667/ses-2/mri/iy_sub-0025667_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025667/ses-2/mri/julichbrain_sub-0025667_ses-2_run-1_T1w.csv

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SWU_4/sub-0025667/ses-2/mri/julichbrain_sub-0025667_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025667/ses-2/mri/lpba40_sub-0025667_ses-2_run-1_T1w.csv

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SWU_4/sub-0025667/ses-2/mri/lpba40_sub-0025667_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025667/ses-2/mri/m0wp1sub-0025667_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jw/p0/MD5E-s2586287--7bd81b3afdc1866fa1e9d7c700fc2d56.nii.gz/MD5E-s2586287--7bd81b3afdc1866fa1e9d7c700fc2d56.nii.gz

SWU_4/sub-0025667/ses-2/mri/m0wp2sub-0025667_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025667/ses-2/mri/m0wp3sub-0025667_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025667/ses-2/mri/mori_sub-0025667_ses-2_run-1_T1w.csv

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SWU_4/sub-0025667/ses-2/mri/mori_sub-0025667_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025667/ses-2/mri/mwp1sub-0025667_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025667/ses-2/mri/mwp2sub-0025667_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025667/ses-2/mri/mwp3sub-0025667_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025667/ses-2/mri/neuromorphometrics_sub-0025667_ses-2_run-1_T1w.csv

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SWU_4/sub-0025667/ses-2/mri/neuromorphometrics_sub-0025667_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025667/ses-2/mri/p0sub-0025667_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025667/ses-2/mri/p1sub-0025667_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025667/ses-2/mri/p2sub-0025667_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025667/ses-2/mri/p3sub-0025667_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025667/ses-2/mri/rp1sub-0025667_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025667/ses-2/mri/rp2sub-0025667_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025667/ses-2/mri/rp3sub-0025667_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025667/ses-2/mri/t_sub-0025667_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025667/ses-2/mri/t_sub-0025667_ses-2_run-1_T1w_rigid_reorient.mat

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SWU_4/sub-0025667/ses-2/mri/thalamus_sub-0025667_ses-2_run-1_T1w.csv

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SWU_4/sub-0025667/ses-2/mri/thalamus_sub-0025667_ses-2_run-1_T1w.nii.gz

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