[DATALAD RUNCMD] Compute NYU_2/sub-0025166/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025166/ses-1/anat/sub-0025166_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025166/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025166/ses-1/label/catROI_sub-0025166_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/26/MD5E-s57872--3d23d6b263cb7b20aa64be2e5d5ff8e3.mat/MD5E-s57872--3d23d6b263cb7b20aa64be2e5d5ff8e3.mat

NYU_2/sub-0025166/ses-1/label/catROI_sub-0025166_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/89/p7/MD5E-s188922--4d14cdb8dd530cfb819597276ecfd124.xml/MD5E-s188922--4d14cdb8dd530cfb819597276ecfd124.xml

NYU_2/sub-0025166/ses-1/label/catROI_sub-0025166_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/k2/gk/MD5E-s57903--e06b67d4cfd346a5f95334ae19bc1e4f.mat/MD5E-s57903--e06b67d4cfd346a5f95334ae19bc1e4f.mat

NYU_2/sub-0025166/ses-1/label/catROI_sub-0025166_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/83/07/MD5E-s188962--18538d4f1dcb7fdb422d38755aa2b1fc.xml/MD5E-s188962--18538d4f1dcb7fdb422d38755aa2b1fc.xml

NYU_2/sub-0025166/ses-1/label/catROIs_sub-0025166_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vX/wP/MD5E-s120363--61473e7874ddd15dda7de1b2c570a7a2.mat/MD5E-s120363--61473e7874ddd15dda7de1b2c570a7a2.mat

NYU_2/sub-0025166/ses-1/label/catROIs_sub-0025166_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/85/v5/MD5E-s332060--61b6f5f23f110ef040b82345574f8a66.xml/MD5E-s332060--61b6f5f23f110ef040b82345574f8a66.xml

NYU_2/sub-0025166/ses-1/label/catROIs_sub-0025166_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kJ/q7/MD5E-s120272--7da1871cf8f019f5a49e7aaf8a767ad5.mat/MD5E-s120272--7da1871cf8f019f5a49e7aaf8a767ad5.mat

NYU_2/sub-0025166/ses-1/label/catROIs_sub-0025166_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/43/zq/MD5E-s332133--6acc2ace517ca3d90ce00db7431d6f39.xml/MD5E-s332133--6acc2ace517ca3d90ce00db7431d6f39.xml

NYU_2/sub-0025166/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025166_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vk/1m/MD5E-s144978--74836513073fc8dc90d0a1197ad0e282.nii.gz/MD5E-s144978--74836513073fc8dc90d0a1197ad0e282.nii.gz

NYU_2/sub-0025166/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025166_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/M8/3X/MD5E-s144830--d8c45a0887aed49a2d8896dd51f62a04.nii.gz/MD5E-s144830--d8c45a0887aed49a2d8896dd51f62a04.nii.gz

NYU_2/sub-0025166/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025166_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jx/36/MD5E-s162631--14a05eefada5e81fc730dbb24b4e04ba.nii.gz/MD5E-s162631--14a05eefada5e81fc730dbb24b4e04ba.nii.gz

NYU_2/sub-0025166/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025166_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/QJ/MJ/MD5E-s162194--f79d775824acea481de4a6609f8f9eae.nii.gz/MD5E-s162194--f79d775824acea481de4a6609f8f9eae.nii.gz

NYU_2/sub-0025166/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025166_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w5/wm/MD5E-s218805--7658081cf39a46096befea97412ec62f.nii.gz/MD5E-s218805--7658081cf39a46096befea97412ec62f.nii.gz

NYU_2/sub-0025166/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025166_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/78/f5/MD5E-s218135--9bd5f9278a979645a3449f9d6185db48.nii.gz/MD5E-s218135--9bd5f9278a979645a3449f9d6185db48.nii.gz

NYU_2/sub-0025166/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025166_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jW/fX/MD5E-s242644--34b5997f67483a6a0fbf0a4c729f982e.nii.gz/MD5E-s242644--34b5997f67483a6a0fbf0a4c729f982e.nii.gz

NYU_2/sub-0025166/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025166_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5f/mZ/MD5E-s242634--d3634901851dd1dbff581c72da31d300.nii.gz/MD5E-s242634--d3634901851dd1dbff581c72da31d300.nii.gz

NYU_2/sub-0025166/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025166_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MF/05/MD5E-s19726--d0cefd6d003deee202a5a44b1bc69b74.nii.gz/MD5E-s19726--d0cefd6d003deee202a5a44b1bc69b74.nii.gz

NYU_2/sub-0025166/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025166_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/wv/G7/MD5E-s19895--f9bee2158e97ade31178acfed0af009d.nii.gz/MD5E-s19895--f9bee2158e97ade31178acfed0af009d.nii.gz

NYU_2/sub-0025166/ses-1/mri/aal3_sub-0025166_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/08/GP/MD5E-s167889--a27beffbe0e5dc378d7b633b7b6a1878.nii.gz/MD5E-s167889--a27beffbe0e5dc378d7b633b7b6a1878.nii.gz

NYU_2/sub-0025166/ses-1/mri/aal3_sub-0025166_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fG/Gf/MD5E-s167555--7c84df3c73344e09f935532f4cf22395.nii.gz/MD5E-s167555--7c84df3c73344e09f935532f4cf22395.nii.gz

NYU_2/sub-0025166/ses-1/mri/anatomy3_sub-0025166_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7W/gX/MD5E-s116230--128e2dbf3022dea94e2d76d915a89489.nii.gz/MD5E-s116230--128e2dbf3022dea94e2d76d915a89489.nii.gz

NYU_2/sub-0025166/ses-1/mri/anatomy3_sub-0025166_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zX/4q/MD5E-s116070--564b76dce18a6f6d76fc6e38a4d79ea7.nii.gz/MD5E-s116070--564b76dce18a6f6d76fc6e38a4d79ea7.nii.gz

NYU_2/sub-0025166/ses-1/mri/anon_misub-0025166_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XJ/f0/MD5E-s4402204--c612b5edca9c8b20c1f363a6a33e71d0.nii.gz/MD5E-s4402204--c612b5edca9c8b20c1f363a6a33e71d0.nii.gz

NYU_2/sub-0025166/ses-1/mri/anon_misub-0025166_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fK/Kq/MD5E-s4454592--e2ef642b5865c8b13fe0d889db3e5237.nii.gz/MD5E-s4454592--e2ef642b5865c8b13fe0d889db3e5237.nii.gz

NYU_2/sub-0025166/ses-1/mri/anon_msub-0025166_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/0P/xG/MD5E-s9336615--72826a58db01c91be72034f44fbf4c53.nii.gz/MD5E-s9336615--72826a58db01c91be72034f44fbf4c53.nii.gz

NYU_2/sub-0025166/ses-1/mri/anon_msub-0025166_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025166/ses-1/mri/cat_sub-0025166_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/XX/MD5E-s87897--7308b4c59ed9f6d31ebd618718c9a679.nii.gz/MD5E-s87897--7308b4c59ed9f6d31ebd618718c9a679.nii.gz

NYU_2/sub-0025166/ses-1/mri/cat_sub-0025166_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/ZF/Fz/MD5E-s88387--9cd8e87b607df3e11648fd2c0a1a21ab.nii.gz/MD5E-s88387--9cd8e87b607df3e11648fd2c0a1a21ab.nii.gz

NYU_2/sub-0025166/ses-1/mri/cobra_sub-0025166_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g1/w8/MD5E-s41701--cb7633b0bf9cde5fa64a8f8d9a1b00aa.nii.gz/MD5E-s41701--cb7633b0bf9cde5fa64a8f8d9a1b00aa.nii.gz

NYU_2/sub-0025166/ses-1/mri/cobra_sub-0025166_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025166/ses-1/mri/hammers_sub-0025166_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PJ/0Q/MD5E-s127863--481523764ae2fcac8397ceec21747133.nii.gz/MD5E-s127863--481523764ae2fcac8397ceec21747133.nii.gz

NYU_2/sub-0025166/ses-1/mri/hammers_sub-0025166_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025166/ses-1/mri/ibsr_sub-0025166_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025166/ses-1/mri/ibsr_sub-0025166_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025166/ses-1/mri/it_sub-0025166_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qw/wF/MD5E-s282--29a0f69433e69a9ff0746d83cdc16d2b.mat/MD5E-s282--29a0f69433e69a9ff0746d83cdc16d2b.mat

NYU_2/sub-0025166/ses-1/mri/it_sub-0025166_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025166/ses-1/mri/it_sub-0025166_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025166/ses-1/mri/it_sub-0025166_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025166/ses-1/mri/iy_sub-0025166_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025166/ses-1/mri/iy_sub-0025166_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025166/ses-1/mri/julichbrain_sub-0025166_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025166/ses-1/mri/julichbrain_sub-0025166_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025166/ses-1/mri/lpba40_sub-0025166_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025166/ses-1/mri/lpba40_sub-0025166_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025166/ses-1/mri/m0wp1sub-0025166_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025166/ses-1/mri/m0wp1sub-0025166_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025166/ses-1/mri/m0wp2sub-0025166_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025166/ses-1/mri/m0wp2sub-0025166_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025166/ses-1/mri/m0wp3sub-0025166_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025166/ses-1/mri/m0wp3sub-0025166_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025166/ses-1/mri/mori_sub-0025166_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025166/ses-1/mri/mori_sub-0025166_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025166/ses-1/mri/mwp1sub-0025166_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025166/ses-1/mri/mwp1sub-0025166_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025166/ses-1/mri/mwp2sub-0025166_ses-1_run-1_T1w.nii.gz

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