[DATALAD RUNCMD] Compute BNU_1/sub-0025868/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025868/ses-2/anat/sub-0025868_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025868/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025868/ses-2/label/catROI_sub-0025868_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/xj/MD5E-s57891--fbe2b06e658758ccaecbe5eae03fede7.mat/MD5E-s57891--fbe2b06e658758ccaecbe5eae03fede7.mat

BNU_1/sub-0025868/ses-2/label/catROI_sub-0025868_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mQ/Kz/MD5E-s188873--cfb4b348347af1bba76c562fe84cd6df.xml/MD5E-s188873--cfb4b348347af1bba76c562fe84cd6df.xml

BNU_1/sub-0025868/ses-2/label/catROIs_sub-0025868_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W7/4G/MD5E-s120049--343ee62d7768dd89280ced33006c64bf.mat/MD5E-s120049--343ee62d7768dd89280ced33006c64bf.mat

BNU_1/sub-0025868/ses-2/label/catROIs_sub-0025868_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j9/z4/MD5E-s332135--69f38dbe3ffb345fb0640c61d5c42a05.xml/MD5E-s332135--69f38dbe3ffb345fb0640c61d5c42a05.xml

BNU_1/sub-0025868/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025868_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025868/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v1/Q4/MD5E-s148746--a028b4f8532db848f9625df8e7cefe8f.nii.gz/MD5E-s148746--a028b4f8532db848f9625df8e7cefe8f.nii.gz

BNU_1/sub-0025868/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025868_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025868/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8w/Zz/MD5E-s168729--c8cba582f9a403f5207d0d2723204639.nii.gz/MD5E-s168729--c8cba582f9a403f5207d0d2723204639.nii.gz

BNU_1/sub-0025868/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025868_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025868/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5K/Xx/MD5E-s226502--225aa0dfc9ce71d0d5c6402a6d05cd64.nii.gz/MD5E-s226502--225aa0dfc9ce71d0d5c6402a6d05cd64.nii.gz

BNU_1/sub-0025868/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025868_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025868/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/9v/MD5E-s252345--14306ddd736c1ab2d40d48b97bc4353f.nii.gz/MD5E-s252345--14306ddd736c1ab2d40d48b97bc4353f.nii.gz

BNU_1/sub-0025868/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025868_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025868/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qk/WJ/MD5E-s20596--a0929217006f19e684ebe09d164b0039.nii.gz/MD5E-s20596--a0929217006f19e684ebe09d164b0039.nii.gz

BNU_1/sub-0025868/ses-2/mri/aal3_sub-0025868_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025868/ses-2/mri/aal3_sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XF/1k/MD5E-s171334--9385e2ba101a550b151e596df295ce18.nii.gz/MD5E-s171334--9385e2ba101a550b151e596df295ce18.nii.gz

BNU_1/sub-0025868/ses-2/mri/anatomy3_sub-0025868_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025868/ses-2/mri/anatomy3_sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1J/xm/MD5E-s121996--f4470ebf99d94871aba71d22f3633beb.nii.gz/MD5E-s121996--f4470ebf99d94871aba71d22f3633beb.nii.gz

BNU_1/sub-0025868/ses-2/mri/anon_misub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P6/f5/MD5E-s4371609--a68f5e71e9215a479f0d3d550670206f.nii.gz/MD5E-s4371609--a68f5e71e9215a479f0d3d550670206f.nii.gz

BNU_1/sub-0025868/ses-2/mri/anon_msub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kk/23/MD5E-s10409206--9f316d933964d15f7e070f9f3c04372b.nii.gz/MD5E-s10409206--9f316d933964d15f7e070f9f3c04372b.nii.gz

BNU_1/sub-0025868/ses-2/mri/cat_sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JP/K1/MD5E-s93800--53ccd7eba6457f4ae24c439452c56f9a.nii.gz/MD5E-s93800--53ccd7eba6457f4ae24c439452c56f9a.nii.gz

BNU_1/sub-0025868/ses-2/mri/cobra_sub-0025868_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025868/ses-2/mri/cobra_sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/18/K9/MD5E-s42772--612b63f7d379adc3c77222e3e1a43599.nii.gz/MD5E-s42772--612b63f7d379adc3c77222e3e1a43599.nii.gz

BNU_1/sub-0025868/ses-2/mri/hammers_sub-0025868_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025868/ses-2/mri/hammers_sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0q/Jj/MD5E-s135690--41e1d93a6c41cae80911ebfcd25ff999.nii.gz/MD5E-s135690--41e1d93a6c41cae80911ebfcd25ff999.nii.gz

BNU_1/sub-0025868/ses-2/mri/ibsr_sub-0025868_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025868/ses-2/mri/ibsr_sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4x/x5/MD5E-s143298--f6eddff70ac02ff5d02b981d678562cc.nii.gz/MD5E-s143298--f6eddff70ac02ff5d02b981d678562cc.nii.gz

BNU_1/sub-0025868/ses-2/mri/it_sub-0025868_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7q/K7/MD5E-s282--a37dc0ccce91ff4b82efc1f222ce5cd6.mat/MD5E-s282--a37dc0ccce91ff4b82efc1f222ce5cd6.mat

BNU_1/sub-0025868/ses-2/mri/it_sub-0025868_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XK/4g/MD5E-s283--9e8ef4bfb751bedefefd5a65e7977099.mat/MD5E-s283--9e8ef4bfb751bedefefd5a65e7977099.mat

BNU_1/sub-0025868/ses-2/mri/iy_sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/jm/MD5E-s37923072--41c87b20926252e632af63ca6a1c8072.nii.gz/MD5E-s37923072--41c87b20926252e632af63ca6a1c8072.nii.gz

BNU_1/sub-0025868/ses-2/mri/julichbrain_sub-0025868_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025868/ses-2/mri/julichbrain_sub-0025868_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025868/ses-2/mri/lpba40_sub-0025868_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025868/ses-2/mri/lpba40_sub-0025868_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025868/ses-2/mri/m0wp1sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q0/gw/MD5E-s2574769--cfc34962cb7fb68b4e20f6a637e19570.nii.gz/MD5E-s2574769--cfc34962cb7fb68b4e20f6a637e19570.nii.gz

BNU_1/sub-0025868/ses-2/mri/m0wp2sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9M/16/MD5E-s2288419--3e012a742339e5196c36c09575a49738.nii.gz/MD5E-s2288419--3e012a742339e5196c36c09575a49738.nii.gz

BNU_1/sub-0025868/ses-2/mri/m0wp3sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z6/1F/MD5E-s2479280--a72ea03ce7983040cbe6a51b05d7848c.nii.gz/MD5E-s2479280--a72ea03ce7983040cbe6a51b05d7848c.nii.gz

BNU_1/sub-0025868/ses-2/mri/mori_sub-0025868_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025868/ses-2/mri/mori_sub-0025868_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025868/ses-2/mri/mwp1sub-0025868_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025868/ses-2/mri/mwp2sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025868/ses-2/mri/mwp3sub-0025868_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025868/ses-2/mri/neuromorphometrics_sub-0025868_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025868/ses-2/mri/neuromorphometrics_sub-0025868_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025868/ses-2/mri/p0sub-0025868_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025868/ses-2/mri/p1sub-0025868_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025868/ses-2/mri/p2sub-0025868_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025868/ses-2/mri/p3sub-0025868_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025868/ses-2/mri/rp1sub-0025868_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025868/ses-2/mri/rp2sub-0025868_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025868/ses-2/mri/rp3sub-0025868_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025868/ses-2/mri/t_sub-0025868_ses-2_run-1_T1w_affine_reorient.mat

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BNU_1/sub-0025868/ses-2/mri/t_sub-0025868_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025868/ses-2/mri/thalamus_sub-0025868_ses-2_run-1_T1w.csv

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BNU_1/sub-0025868/ses-2/mri/thalamus_sub-0025868_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025868/ses-2/mri/wj_sub-0025868_ses-2_run-1_T1w.nii.gz

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