[DATALAD RUNCMD] Compute NYU_2/sub-0025064/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025064/ses-1/anat/sub-0025064_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025064/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025064/ses-1/label/catROI_sub-0025064_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/04/zK/MD5E-s57988--734f893268808dbda2007cacd04cf17d.mat/MD5E-s57988--734f893268808dbda2007cacd04cf17d.mat

NYU_2/sub-0025064/ses-1/label/catROI_sub-0025064_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/58/Kz/MD5E-s188702--264e5040734a57fb99c49c94368ca653.xml/MD5E-s188702--264e5040734a57fb99c49c94368ca653.xml

NYU_2/sub-0025064/ses-1/label/catROI_sub-0025064_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kg/44/MD5E-s57938--e03e2dc62b3295ddab1dc17795971f7c.mat/MD5E-s57938--e03e2dc62b3295ddab1dc17795971f7c.mat

NYU_2/sub-0025064/ses-1/label/catROI_sub-0025064_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PX/42/MD5E-s188619--87a62550dba532eaeee23aa5dc5b8558.xml/MD5E-s188619--87a62550dba532eaeee23aa5dc5b8558.xml

NYU_2/sub-0025064/ses-1/label/catROIs_sub-0025064_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5q/pG/MD5E-s120332--d31304f4a0035ad19f82e1f0d65ed103.mat/MD5E-s120332--d31304f4a0035ad19f82e1f0d65ed103.mat

NYU_2/sub-0025064/ses-1/label/catROIs_sub-0025064_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
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NYU_2/sub-0025064/ses-1/label/catROIs_sub-0025064_ses-1_run-2_T1w.mat

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+../../../../.git/annex/objects/Gj/m5/MD5E-s120269--9f2577352ff4850f398e8e6bb6694417.mat/MD5E-s120269--9f2577352ff4850f398e8e6bb6694417.mat

NYU_2/sub-0025064/ses-1/label/catROIs_sub-0025064_ses-1_run-2_T1w.xml

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+../../../../.git/annex/objects/X7/f3/MD5E-s332189--304ad7fb88fea1027809ed19a894d34e.xml/MD5E-s332189--304ad7fb88fea1027809ed19a894d34e.xml

NYU_2/sub-0025064/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025064_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025064/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025064_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025064/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025064_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/VZ/vv/MD5E-s174661--a36ba7b52147d657ce272ed607a4cc74.nii.gz/MD5E-s174661--a36ba7b52147d657ce272ed607a4cc74.nii.gz

NYU_2/sub-0025064/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025064_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kq/Zj/MD5E-s174269--1e3108a30126e6be50f4a63e2b4208f9.nii.gz/MD5E-s174269--1e3108a30126e6be50f4a63e2b4208f9.nii.gz

NYU_2/sub-0025064/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025064_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025064/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025064_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025064_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025064_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025064/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025064_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025064/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025064_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7V/5Q/MD5E-s20510--e395c5366a58530c5f15d0c12953c152.nii.gz/MD5E-s20510--e395c5366a58530c5f15d0c12953c152.nii.gz

NYU_2/sub-0025064/ses-1/mri/aal3_sub-0025064_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025064/ses-1/mri/aal3_sub-0025064_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025064/ses-1/mri/anatomy3_sub-0025064_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025064/ses-1/mri/anatomy3_sub-0025064_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kf/5q/MD5E-s123025--06aada216f88636c07cf18e71d5c3c45.nii.gz/MD5E-s123025--06aada216f88636c07cf18e71d5c3c45.nii.gz

NYU_2/sub-0025064/ses-1/mri/anon_misub-0025064_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/anon_misub-0025064_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/anon_msub-0025064_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/anon_msub-0025064_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/cat_sub-0025064_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025064/ses-1/mri/cat_sub-0025064_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/cobra_sub-0025064_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025064/ses-1/mri/cobra_sub-0025064_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/hammers_sub-0025064_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025064/ses-1/mri/hammers_sub-0025064_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/ibsr_sub-0025064_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/ibsr_sub-0025064_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/it_sub-0025064_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025064/ses-1/mri/it_sub-0025064_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025064/ses-1/mri/it_sub-0025064_ses-1_run-2_T1w_affine_reorient.mat

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NYU_2/sub-0025064/ses-1/mri/it_sub-0025064_ses-1_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025064/ses-1/mri/iy_sub-0025064_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/iy_sub-0025064_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/julichbrain_sub-0025064_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/julichbrain_sub-0025064_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/lpba40_sub-0025064_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/lpba40_sub-0025064_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/m0wp1sub-0025064_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/m0wp1sub-0025064_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/m0wp2sub-0025064_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/m0wp2sub-0025064_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/m0wp3sub-0025064_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/m0wp3sub-0025064_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/mori_sub-0025064_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/mori_sub-0025064_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/mwp1sub-0025064_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025064/ses-1/mri/mwp1sub-0025064_ses-1_run-2_T1w.nii.gz

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