[DATALAD RUNCMD] Compute NYU_2/sub-0025181/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025181/ses-1/anat/sub-0025181_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025181/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025181/ses-1/label/catROI_sub-0025181_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xW/vG/MD5E-s57813--7bb35f124a89faffa420f71111b89cef.mat/MD5E-s57813--7bb35f124a89faffa420f71111b89cef.mat

NYU_2/sub-0025181/ses-1/label/catROI_sub-0025181_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fj/p9/MD5E-s188833--865094368c4ba824e6899a32057c77f3.xml/MD5E-s188833--865094368c4ba824e6899a32057c77f3.xml

NYU_2/sub-0025181/ses-1/label/catROI_sub-0025181_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8z/0w/MD5E-s57943--2de56670836acc3d71b62157496441b2.mat/MD5E-s57943--2de56670836acc3d71b62157496441b2.mat

NYU_2/sub-0025181/ses-1/label/catROI_sub-0025181_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5q/XV/MD5E-s188894--8b73837c51c7858ff336083a313ed21b.xml/MD5E-s188894--8b73837c51c7858ff336083a313ed21b.xml

NYU_2/sub-0025181/ses-1/label/catROIs_sub-0025181_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vV/0v/MD5E-s120275--323fa13b18f9a9befdac72d5d1b5a2d8.mat/MD5E-s120275--323fa13b18f9a9befdac72d5d1b5a2d8.mat

NYU_2/sub-0025181/ses-1/label/catROIs_sub-0025181_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QZ/3x/MD5E-s332147--b9ebfe28f1d75ff890f1abd54e5214af.xml/MD5E-s332147--b9ebfe28f1d75ff890f1abd54e5214af.xml

NYU_2/sub-0025181/ses-1/label/catROIs_sub-0025181_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/X2/4K/MD5E-s120194--8a3b4fc58cbd15ba10ba3c388f6c9c17.mat/MD5E-s120194--8a3b4fc58cbd15ba10ba3c388f6c9c17.mat

NYU_2/sub-0025181/ses-1/label/catROIs_sub-0025181_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4k/kz/MD5E-s332140--02ee2cc92bfbbc4d1bba61da3151c537.xml/MD5E-s332140--02ee2cc92bfbbc4d1bba61da3151c537.xml

NYU_2/sub-0025181/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025181_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/93/z1/MD5E-s145627--21c2e0deebb489c4a85ae3237c4317dc.nii.gz/MD5E-s145627--21c2e0deebb489c4a85ae3237c4317dc.nii.gz

NYU_2/sub-0025181/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025181_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/38/9z/MD5E-s146140--e43f303cab13f4c6aa171f36fae07225.nii.gz/MD5E-s146140--e43f303cab13f4c6aa171f36fae07225.nii.gz

NYU_2/sub-0025181/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025181_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vG/82/MD5E-s162296--32090297843b78f3e1c6987c1dfcd56d.nii.gz/MD5E-s162296--32090297843b78f3e1c6987c1dfcd56d.nii.gz

NYU_2/sub-0025181/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025181_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Xz/m9/MD5E-s162599--2ce12fc32fd88549b6cd129e131813a0.nii.gz/MD5E-s162599--2ce12fc32fd88549b6cd129e131813a0.nii.gz

NYU_2/sub-0025181/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025181_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z2/fW/MD5E-s219588--5ca31877f924c39862d047451431a54d.nii.gz/MD5E-s219588--5ca31877f924c39862d047451431a54d.nii.gz

NYU_2/sub-0025181/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025181_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0Q/7K/MD5E-s220371--57f408dbd902cb31bb5b515293b84705.nii.gz/MD5E-s220371--57f408dbd902cb31bb5b515293b84705.nii.gz

NYU_2/sub-0025181/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025181_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xw/VF/MD5E-s242699--8c1f1c6a95af060465eff80646cfbabd.nii.gz/MD5E-s242699--8c1f1c6a95af060465eff80646cfbabd.nii.gz

NYU_2/sub-0025181/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025181_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/w8/WX/MD5E-s243704--eea017f2c3c68a6f625e6af232d446c5.nii.gz/MD5E-s243704--eea017f2c3c68a6f625e6af232d446c5.nii.gz

NYU_2/sub-0025181/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025181_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v3/Vp/MD5E-s19469--67e9ef2ab921fea5827c7848e9916de9.nii.gz/MD5E-s19469--67e9ef2ab921fea5827c7848e9916de9.nii.gz

NYU_2/sub-0025181/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025181_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Wf/2P/MD5E-s19491--8e3078ff5dba054e6513de8bddd9b227.nii.gz/MD5E-s19491--8e3078ff5dba054e6513de8bddd9b227.nii.gz

NYU_2/sub-0025181/ses-1/mri/aal3_sub-0025181_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FP/8p/MD5E-s164027--7dec64cf16bedf8530ec0d826161a9c0.nii.gz/MD5E-s164027--7dec64cf16bedf8530ec0d826161a9c0.nii.gz

NYU_2/sub-0025181/ses-1/mri/aal3_sub-0025181_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7P/xK/MD5E-s164693--53c8fe32288acd43c49f8d57cff78e67.nii.gz/MD5E-s164693--53c8fe32288acd43c49f8d57cff78e67.nii.gz

NYU_2/sub-0025181/ses-1/mri/anatomy3_sub-0025181_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4K/2V/MD5E-s115389--ae67297677123adbdf48b0882b272d18.nii.gz/MD5E-s115389--ae67297677123adbdf48b0882b272d18.nii.gz

NYU_2/sub-0025181/ses-1/mri/anatomy3_sub-0025181_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P5/k6/MD5E-s115705--2891cf15ce8728228356c12de50b3f58.nii.gz/MD5E-s115705--2891cf15ce8728228356c12de50b3f58.nii.gz

NYU_2/sub-0025181/ses-1/mri/anon_misub-0025181_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/64/xz/MD5E-s3628947--4cc5c2baa87ec89e3ae98f72c670b8e0.nii.gz/MD5E-s3628947--4cc5c2baa87ec89e3ae98f72c670b8e0.nii.gz

NYU_2/sub-0025181/ses-1/mri/anon_misub-0025181_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3f/x9/MD5E-s3677732--4a53f8f5d5231bf84d557022c3cb6287.nii.gz/MD5E-s3677732--4a53f8f5d5231bf84d557022c3cb6287.nii.gz

NYU_2/sub-0025181/ses-1/mri/anon_msub-0025181_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/anon_msub-0025181_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/m3/7P/MD5E-s8880654--2e817a523c63e3dd13362f66c05da567.nii.gz/MD5E-s8880654--2e817a523c63e3dd13362f66c05da567.nii.gz

NYU_2/sub-0025181/ses-1/mri/cat_sub-0025181_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K3/Mj/MD5E-s85906--05b90cd0b09b1008fcb294aa0fa26c9a.nii.gz/MD5E-s85906--05b90cd0b09b1008fcb294aa0fa26c9a.nii.gz

NYU_2/sub-0025181/ses-1/mri/cat_sub-0025181_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/60/XZ/MD5E-s85750--e8f37488ae1146e1667f650ab2b84e0e.nii.gz/MD5E-s85750--e8f37488ae1146e1667f650ab2b84e0e.nii.gz

NYU_2/sub-0025181/ses-1/mri/cobra_sub-0025181_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025181/ses-1/mri/cobra_sub-0025181_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025181/ses-1/mri/hammers_sub-0025181_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v2/0Q/MD5E-s127615--24ce8b1be2741b6659fb9dc75680d796.nii.gz/MD5E-s127615--24ce8b1be2741b6659fb9dc75680d796.nii.gz

NYU_2/sub-0025181/ses-1/mri/hammers_sub-0025181_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025181/ses-1/mri/ibsr_sub-0025181_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025181/ses-1/mri/ibsr_sub-0025181_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/it_sub-0025181_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fP/9G/MD5E-s282--34d01675ba827ff48c620de5c7315c0b.mat/MD5E-s282--34d01675ba827ff48c620de5c7315c0b.mat

NYU_2/sub-0025181/ses-1/mri/it_sub-0025181_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025181/ses-1/mri/it_sub-0025181_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025181/ses-1/mri/it_sub-0025181_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025181/ses-1/mri/iy_sub-0025181_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/iy_sub-0025181_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/julichbrain_sub-0025181_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/julichbrain_sub-0025181_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/lpba40_sub-0025181_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025181/ses-1/mri/lpba40_sub-0025181_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/m0wp1sub-0025181_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/m0wp1sub-0025181_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/m0wp2sub-0025181_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/m0wp2sub-0025181_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/m0wp3sub-0025181_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/m0wp3sub-0025181_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/mori_sub-0025181_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/mori_sub-0025181_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/mwp1sub-0025181_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/mwp1sub-0025181_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025181/ses-1/mri/mwp2sub-0025181_ses-1_run-1_T1w.nii.gz

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