[DATALAD RUNCMD] Compute BNU_2/sub-0025932/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025932/ses-2/anat/sub-0025932_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025932/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025932/ses-2/label/catROI_sub-0025932_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Z/7Z/MD5E-s61284--70de9e2a13adb7ec1a939869a9e01eec.mat/MD5E-s61284--70de9e2a13adb7ec1a939869a9e01eec.mat

BNU_2/sub-0025932/ses-2/label/catROI_sub-0025932_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7w/gJ/MD5E-s188991--916baeed6cfe9a909db70cb4d00f1341.xml/MD5E-s188991--916baeed6cfe9a909db70cb4d00f1341.xml

BNU_2/sub-0025932/ses-2/label/catROIs_sub-0025932_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vF/9j/MD5E-s119985--3cc2299711862707839471306b705435.mat/MD5E-s119985--3cc2299711862707839471306b705435.mat

BNU_2/sub-0025932/ses-2/label/catROIs_sub-0025932_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7K/XM/MD5E-s332058--4a64275fe83ad1a7df0aaa83806f10b6.xml/MD5E-s332058--4a64275fe83ad1a7df0aaa83806f10b6.xml

BNU_2/sub-0025932/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025932_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025932/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J1/qP/MD5E-s164178--5b13901019a4bdac9927dc9c185b43b5.nii.gz/MD5E-s164178--5b13901019a4bdac9927dc9c185b43b5.nii.gz

BNU_2/sub-0025932/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025932_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025932/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/jw/MD5E-s182471--a9613fc599d00bc150f8b3d1d96d68c2.nii.gz/MD5E-s182471--a9613fc599d00bc150f8b3d1d96d68c2.nii.gz

BNU_2/sub-0025932/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025932_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025932/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/9J/MD5E-s247935--f76bd78c561d1231ab802720baa64f66.nii.gz/MD5E-s247935--f76bd78c561d1231ab802720baa64f66.nii.gz

BNU_2/sub-0025932/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025932_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025932/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JZ/Gf/MD5E-s274299--e3f8c80b7ad3e9ac3824e2ee2d0f7844.nii.gz/MD5E-s274299--e3f8c80b7ad3e9ac3824e2ee2d0f7844.nii.gz

BNU_2/sub-0025932/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025932_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025932/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v0/35/MD5E-s24939--2232814c92ef05ee6b188a69f5161adc.nii.gz/MD5E-s24939--2232814c92ef05ee6b188a69f5161adc.nii.gz

BNU_2/sub-0025932/ses-2/mri/aal3_sub-0025932_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025932/ses-2/mri/aal3_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KG/1X/MD5E-s185601--c08e51a543576a71b396693d4d943993.nii.gz/MD5E-s185601--c08e51a543576a71b396693d4d943993.nii.gz

BNU_2/sub-0025932/ses-2/mri/anatomy3_sub-0025932_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025932/ses-2/mri/anatomy3_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pJ/Xp/MD5E-s135062--7b389010623ca1888e4e8bd74b1a4896.nii.gz/MD5E-s135062--7b389010623ca1888e4e8bd74b1a4896.nii.gz

BNU_2/sub-0025932/ses-2/mri/anon_misub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7x/0q/MD5E-s4843850--bde52faa99e32dfca517c75f13adfd63.nii.gz/MD5E-s4843850--bde52faa99e32dfca517c75f13adfd63.nii.gz

BNU_2/sub-0025932/ses-2/mri/anon_msub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k4/z8/MD5E-s10670816--43946549d0d1841a4fd0027ab95e6398.nii.gz/MD5E-s10670816--43946549d0d1841a4fd0027ab95e6398.nii.gz

BNU_2/sub-0025932/ses-2/mri/cat_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mx/9p/MD5E-s101754--ae67acdb49e8d49ebaf110e67e22703f.nii.gz/MD5E-s101754--ae67acdb49e8d49ebaf110e67e22703f.nii.gz

BNU_2/sub-0025932/ses-2/mri/cobra_sub-0025932_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025932/ses-2/mri/cobra_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x0/P4/MD5E-s49472--0c16b70bd907e0c213eeede5e94e4bc0.nii.gz/MD5E-s49472--0c16b70bd907e0c213eeede5e94e4bc0.nii.gz

BNU_2/sub-0025932/ses-2/mri/hammers_sub-0025932_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025932/ses-2/mri/hammers_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/09/Jx/MD5E-s147370--ff9944855dcca192567ba35431a26870.nii.gz/MD5E-s147370--ff9944855dcca192567ba35431a26870.nii.gz

BNU_2/sub-0025932/ses-2/mri/ibsr_sub-0025932_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025932/ses-2/mri/ibsr_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X8/vP/MD5E-s155175--d51b98ff71f4eabb5c5af71ad049480e.nii.gz/MD5E-s155175--d51b98ff71f4eabb5c5af71ad049480e.nii.gz

BNU_2/sub-0025932/ses-2/mri/it_sub-0025932_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/Zw/MD5E-s282--125b37f79e8e5305c5b4aaf0096b9318.mat/MD5E-s282--125b37f79e8e5305c5b4aaf0096b9318.mat

BNU_2/sub-0025932/ses-2/mri/it_sub-0025932_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4f/6G/MD5E-s282--5394fbcf22f4c27b55822266d0426530.mat/MD5E-s282--5394fbcf22f4c27b55822266d0426530.mat

BNU_2/sub-0025932/ses-2/mri/iy_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3m/WK/MD5E-s46747833--8c32f5c20526b596aa5009a5ff17f68f.nii.gz/MD5E-s46747833--8c32f5c20526b596aa5009a5ff17f68f.nii.gz

BNU_2/sub-0025932/ses-2/mri/julichbrain_sub-0025932_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025932/ses-2/mri/julichbrain_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5k/Zz/MD5E-s197669--44cfcd65e9a06ac170ff6f91bc5b7c32.nii.gz/MD5E-s197669--44cfcd65e9a06ac170ff6f91bc5b7c32.nii.gz

BNU_2/sub-0025932/ses-2/mri/lpba40_sub-0025932_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025932/ses-2/mri/lpba40_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jf/73/MD5E-s144568--334521ef342dacfd38cc0233b0d3589d.nii.gz/MD5E-s144568--334521ef342dacfd38cc0233b0d3589d.nii.gz

BNU_2/sub-0025932/ses-2/mri/m0wp1sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FG/M8/MD5E-s2567519--8d933c1d265081c96c030827553a5b23.nii.gz/MD5E-s2567519--8d933c1d265081c96c030827553a5b23.nii.gz

BNU_2/sub-0025932/ses-2/mri/m0wp2sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/2F/MD5E-s2278428--d026c6d25fd29b248873cf8893ca648b.nii.gz/MD5E-s2278428--d026c6d25fd29b248873cf8893ca648b.nii.gz

BNU_2/sub-0025932/ses-2/mri/m0wp3sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2M/PF/MD5E-s2507781--bd4987fdddf88aacf42e893fdb69da69.nii.gz/MD5E-s2507781--bd4987fdddf88aacf42e893fdb69da69.nii.gz

BNU_2/sub-0025932/ses-2/mri/mori_sub-0025932_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025932/ses-2/mri/mori_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/76/m1/MD5E-s172970--12d2d8f3250c4e09ffd326874f563793.nii.gz/MD5E-s172970--12d2d8f3250c4e09ffd326874f563793.nii.gz

BNU_2/sub-0025932/ses-2/mri/mwp1sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GW/x0/MD5E-s2572685--dc08b0ff55d76587718a9f852493e08e.nii.gz/MD5E-s2572685--dc08b0ff55d76587718a9f852493e08e.nii.gz

BNU_2/sub-0025932/ses-2/mri/mwp2sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8F/MW/MD5E-s2282352--908fefee91f06fa0bc8cfd0d770d7e69.nii.gz/MD5E-s2282352--908fefee91f06fa0bc8cfd0d770d7e69.nii.gz

BNU_2/sub-0025932/ses-2/mri/mwp3sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025932/ses-2/mri/neuromorphometrics_sub-0025932_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025932/ses-2/mri/neuromorphometrics_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025932/ses-2/mri/p0sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pZ/3v/MD5E-s619993--b9cf759a19970040f267c10f1ec0585b.nii.gz/MD5E-s619993--b9cf759a19970040f267c10f1ec0585b.nii.gz

BNU_2/sub-0025932/ses-2/mri/p1sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1V/PQ/MD5E-s655900--150c2b46effb208acd70122b9cf04d3e.nii.gz/MD5E-s655900--150c2b46effb208acd70122b9cf04d3e.nii.gz

BNU_2/sub-0025932/ses-2/mri/p2sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w5/V8/MD5E-s423396--c5fb045cfe335ec3e024bd1251e695ed.nii.gz/MD5E-s423396--c5fb045cfe335ec3e024bd1251e695ed.nii.gz

BNU_2/sub-0025932/ses-2/mri/p3sub-0025932_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025932/ses-2/mri/rp1sub-0025932_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025932/ses-2/mri/rp2sub-0025932_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025932/ses-2/mri/rp3sub-0025932_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025932/ses-2/mri/t_sub-0025932_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M9/xJ/MD5E-s284--4af1f433f914c397f3c16bd7937daa12.mat/MD5E-s284--4af1f433f914c397f3c16bd7937daa12.mat

BNU_2/sub-0025932/ses-2/mri/t_sub-0025932_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fJ/2Q/MD5E-s283--cceb8509c103f1aa2699eb10749f5ae2.mat/MD5E-s283--cceb8509c103f1aa2699eb10749f5ae2.mat

BNU_2/sub-0025932/ses-2/mri/thalamus_sub-0025932_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025932/ses-2/mri/thalamus_sub-0025932_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025932/ses-2/mri/wj_sub-0025932_ses-2_run-1_T1w.nii.gz

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